BAC Information

Click to search

BAC

Clone NameB6Ng01-093A10
Chromosome12 (Build37)
Map Location 74,531,222 - 74,638,124
singlet/doubletdoublet
Overlap genenone
Upstream geneLrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6, EG666356
Downstream geneTmem30b, 2210039B01Rik, Prkch, EG666385, LOC100041489, Hif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093A10.bB6Ng01-093A10.g
ACCDH904629DH904630
length1,1851,099
definitionDH904629|Mus musculus domesticus DNA, BAC clone: B6Ng01-093A10, 5' end.DH904630|Mus musculus domesticus DNA, BAC clone: B6Ng01-093A10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,531,222 - 74,532,413)(74,637,027 - 74,638,124)
sequence
gaattccactgtgtttacttttcctctgaatgtcatttgagaacatgtga
tagctctagcaaggaaaaaaattatttaaaacaaacatttgacaaaaatc
tccaatattgaagacatggtttcttgagtagactgtgaggcccttaggtg
ctttattagggaggcgcggcacacattgagctgaaggagcctaagaccct
acagaactagaagaaaacaaactcctgttgttgaagctccataggctaca
gtattctggtacatcagcctaagaaaatgaatatatgaatcacacaataa
tcctagcattctggaagctaaggagtggggaatcacaagttcaaaaacag
ccttaaaggcatcatgagactctctgaaataacaaaggtaacacacagga
ttgtttagtggaatgtgacagagaaagaaagtaagaactgggtttttctt
gttgtttgagacagagtcttactatgtagccctggctggccaggaactca
tggagatacatctgccctgagtaactatgtgcttccttcctgagtattat
aactaaaggcatacatcatcatatcaggctgttcttgagataggatttca
ctatgtagttctggatggcctggtcagatatgtaagacaggctagccttg
aacttgcagagattttcctgcctctacttcccaagtgctaggattaaagg
catgaattaccattgaaacggttttgatctgcatcatgatcaaaagttag
aaaacagatgaattaatatacccattatggtttgagtataaaataccctc
tataggtctcatatttgaacacccagggttcagatatgtgtcccagctgg
tgatggtattttataaagttatgggattttagacggtgaaaccttgctgg
aggaagtgagttctgggggcagactttgaggcatgatgccagtcctctct
ctgcttcctgaccatggacacatgccaggatccagcagccgtatctcccc
acggtaatggtcagtattcccccaaacttcacaagcaaaatgaccccgta
actgtcggtctttcttatcccacccaagctcctaatatgacatagagttc
cataatttattttcatgctttggcccttaacttagctgggtctcacttgc
tctcatatttacggctcctttgatactatctggtt
gaattctttactccctgaagtattttataataaagtataaaatgaacatt
gttttcctctgctgggtaattaccttagaattcatttaaacaaaaatagt
attatggagaactacccaaaatgtaaggaaaaaaaaaaagaagcaatagt
agctgccccatttgctgactggtgtttggtttataagatttggcacatct
tgttatctccataatggcaattttagaactataaatgatactttccagag
gtcacaccatagttatttaagttcaggggttggtttccccaagcactaag
tagccatgaatgaattatgttttcttgatctgccacaaaagagtcataaa
cttccaagtcggtacaaaccataggctatcacttcaatacatcgggaaaa
ttgcacatggaaaagaataacgcgggacaagggaaagtatgcttgtgttt
taaaagtaatatatgttgctgggaagaagttataaaaaattatgttacat
tggactttcctctttctggaaaacaagttaaggaaggaatggctttgggt
ttgtcgtaagccatggaggaaccagaaaaatgaattaggaaggaggcttg
gccccagaacaaggaatggcttctcttcctgagtccatcaaaaagagaaa
aacaaagaagcctcgagatcccacagtgacttcacagtgtctcgcggttc
ttttccagtggctcctggcaagtatttctgtggccactaaagaactgagt
gttgaggaagtgttcagcaataagctacaattcacttttaaagttaagcc
cagctaaacagcttacactgaaatgtttccagatgacaccctagcttttg
gcttcatcttgacaagttcagtgttttttccatcttgttagggcggaaac
aaaactttggagaaagagctgccctggggtgaagctagttgagagacagt
tggcattccagctagcccagggagactacagaaaaggctcagcttctggg
aagccggtaagctggcatttgttcatgtgtctcccaaggcaactgcacca
ttgcttatcttgtcacatgtgaagcctgtattcggatctgggcagcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_74531222_74532413
seq2: B6Ng01-093A10.b_41_1225

seq1  GAATTCCACTGTGTTTACTTTTCCTCTGAATGTCATTTGAGAACATGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTGTGTTTACTTTTCCTCTGAATGTCATTTGAGAACATGTGA  50

seq1  TAGCTCTAGCAAGGAAAAAAATTATTTAAAACAAACATTTGACAAAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCTAGCAAGGAAAAAAATTATTTAAAACAAACATTTGACAAAAATC  100

seq1  TCCAATATTGAAGACATGGTTTCTTGAGTAGACTGTGAGGCCCTTAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATATTGAAGACATGGTTTCTTGAGTAGACTGTGAGGCCCTTAGGTG  150

seq1  CTTTATTAGGGAGGCGCGGCACACATTGAGCTGAAGGAGCCTAAGACCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTAGGGAGGCGCGGCACACATTGAGCTGAAGGAGCCTAAGACCCT  200

seq1  ACAGAACTAGAAGAAAACAAACTCCTGTTGTTGAAGCTCCATAGGCTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAACTAGAAGAAAACAAACTCCTGTTGTTGAAGCTCCATAGGCTACA  250

seq1  GTATTCTGGTACATCAGCCTAAGAAAATGAATATATGAATCACACAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTCTGGTACATCAGCCTAAGAAAATGAATATATGAATCACACAATAA  300

seq1  TCCTAGCATTCTGGAAGCTAAGGAGTGGGGAATCACAAGTTCAAAAACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCATTCTGGAAGCTAAGGAGTGGGGAATCACAAGTTCAAAAACAG  350

seq1  CCTTAAAGGCATCATGAGACTCTCTGAAATAACAAAGGTAACACACAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAGGCATCATGAGACTCTCTGAAATAACAAAGGTAACACACAGGA  400

seq1  TTGTTTAGTGGAATGTGACAGAGAAAGAAAGTAAGAACTGGGTTTTTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTAGTGGAATGTGACAGAGAAAGAAAGTAAGAACTGGGTTTTTCTT  450

seq1  GTTGTTTGAGACAGAGTCTTACTATGTAGCCCTGGCTGGCCAGGAACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTTGAGACAGAGTCTTACTATGTAGCCCTGGCTGGCCAGGAACTCA  500

seq1  TGGAGATACATCTGCCCTGAGTAACTATGTGCTTCCTTCCTGAGTATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATACATCTGCCCTGAGTAACTATGTGCTTCCTTCCTGAGTATTAT  550

seq1  AACTAAAGGCATACATCATCATATCAGGCTGTTCTTGAGATAGGATTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAGGCATACATCATCATATCAGGCTGTTCTTGAGATAGGATTTCA  600

seq1  CTATGTAGTTCTGGATGGCCTGGTCAGATATGTAAGACAGGCTAGCCTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTAGTTCTGGATGGCCTGGTCAGATATGTAAGACAGGCTAGCCTTG  650

seq1  AACTTGCAGAGATTTTCCTGCCTCTACTTCCCAAGTGCTAGGATTAAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGCAGAGATTTTCCTGCCTCTACTTCCCAAGTGCTAGGATTAAAGG  700

seq1  CATGAATTACCATTGAAACGGTTTTGATCTGCATCATGATCAAAAGTTAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATTACCATTGAAACGGTTTTGATCTGCATCATGATCAAAAGTTAG  750

seq1  AAAACAGATGAATTAATATACCCATTATGGTTTGAGTATAAAATACCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGATGAATTAATATACCCATTATGGTTTGAGTATAAAATACCCTC  800

seq1  TATAGGTCTCATATTTGAACACCCAGGGTTCAGATATGTGTCCCAGCTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGTCTCATATTTGAACACCCAGGGTTCAGATATGTGTCCCAGCTGG  850

seq1  TGATGGTATTTTATAAGGTTATGGGATTTTTAGACGGTGAAACCTTGCTG  900
      |||||||||||||||| ||||||||| |||||||||||||||||||||||
seq2  TGATGGTATTTTATAAAGTTATGGGA-TTTTAGACGGTGAAACCTTGCTG  899

seq1  GAGGAAGTGAGTTCTGGGGGCAGACTTTGAGGCATGATGCCAGTCCTCTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAGTGAGTTCTGGGGGCAGACTTTGAGGCATGATGCCAGTCCTCTC  949

seq1  TCTGCTTCCTGACCATGGACACATGCCAGGATCCAGCAGCCGTATCTTCC  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TCTGCTTCCTGACCATGGACACATGCCAGGATCCAGCAGCCGTATC-TCC  998

seq1  CCACCGTAATGGTCAGTATTCCCCCAAACTTCAC-AGCAAAATGACCCCC  1049
      |||| ||||||||||||||||||||||||||||| |||||||||| ||||
seq2  CCACGGTAATGGTCAGTATTCCCCCAAACTTCACAAGCAAAATGA-CCCC  1047

seq1  GTAACTGTCGGTCTTTCTATACCCACCCAAGCTCTTAATAATGACATAGA  1099
      ||||||||||||||||||   ||||||||||||| |||| ||||||||||
seq2  GTAACTGTCGGTCTTTCTTATCCCACCCAAGCTCCTAAT-ATGACATAGA  1096

seq1  GGTTCAT-ATTTATTTTCAATGCTTTTGGCCTTAGCTTAGGCTGGGTCCT  1148
      | | ||| |||||||||| ||||||| | ||||| |||| ||||||| ||
seq2  GTTCCATAATTTATTTTC-ATGCTTTGGCCCTTAACTTA-GCTGGGT-CT  1143

seq1  CAACTAGCTC-ATTATTTACAGAGCTCCTTTGAATCATTCTGGTT  1192
      | ||| ||||   |||||||   ||||||||||  |  |||||||
seq2  C-ACTTGCTCTCATATTTAC--GGCTCCTTTGATACTATCTGGTT  1185

seq1: chr12_74637027_74638124
seq2: B6Ng01-093A10.g_69_1167 (reverse)

seq1  CCTGCTGCCCAGGATCG-ATACAGGCATCACAATGTGACAAGATAGCCAA  49
      ||||||||||||   || |||||||| |||| |||||||||||||  |||
seq2  CCTGCTGCCCAGATCCGAATACAGGCTTCAC-ATGTGACAAGATAAGCAA  49

seq1  T-GTGCAGTTGCC-TGGGAGACACATG-ACAAATGCCAGC-TAACGGACT  95
      | ||||||||||| ||||||||||||| |||||||||||| || |||  |
seq2  TGGTGCAGTTGCCTTGGGAGACACATGAACAAATGCCAGCTTACCGGCTT  99

seq1  CCCAGGAGCTGAGCCCTTTCTGTAGTCTCCCTGGGCTAGCTGGAATGCCC  145
      ||||| ||||||||| ||||||||||||||||||||||||||||||||| 
seq2  CCCAGAAGCTGAGCCTTTTCTGTAGTCTCCCTGGGCTAGCTGGAATGCCA  149

seq1  ACTGTCTCTCAACTAGCTTCAACCCCAGGGCAGCTTCTTTCTCCAAAGTT  195
      |||||||||||||||||||| ||||||||||||| |||||||||||||||
seq2  ACTGTCTCTCAACTAGCTTC-ACCCCAGGGCAGC-TCTTTCTCCAAAGTT  197

seq1  TTGTTTCCGCCCTAACAAGATGGAAAAAACACTGAACTTGTCAAGATGAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCCGCCCTAACAAGATGGAAAAAACACTGAACTTGTCAAGATGAA  247

seq1  GCCAAAAGCCTAGGGTGTCATCTGGAAACATTTCAGTGTAAGCTGTTTAG  295
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAAG-CTAGGGTGTCATCTGGAAACATTTCAGTGTAAGCTGTTTAG  296

seq1  CTGGGCTTAACTTTAAAAGTGAATTGTAGCTTATTGCTGAACACTTCCTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCTTAACTTTAAAAGTGAATTGTAGCTTATTGCTGAACACTTCCTC  346

seq1  AACACTCAGTTCTTTAGTGGCCACAGAAATACTTGCCAGGAGCCACTGGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTCAGTTCTTTAGTGGCCACAGAAATACTTGCCAGGAGCCACTGGA  396

seq1  AAAGAACCGCGAGACACTGTGAAGTCACTGTGGGATCTCGAGGCTTCTTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAACCGCGAGACACTGTGAAGTCACTGTGGGATCTCGAGGCTTCTTT  446

seq1  GTTTTTCTCTTTTTGATGGACTCAGGAAGAGAAGCCATTCCTTGTTCTGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTCTCTTTTTGATGGACTCAGGAAGAGAAGCCATTCCTTGTTCTGG  496

seq1  GGCCAAGCCTCCTTCCTAATTCATTTTTCTGGTTCCTCCATGGCTTACGA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGCCTCCTTCCTAATTCATTTTTCTGGTTCCTCCATGGCTTACGA  546

seq1  CAAACCCAAAGCCATTCCTTCCTTAACTTGTTTTCCAGAAAGAGGAAAGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCAAAGCCATTCCTTCCTTAACTTGTTTTCCAGAAAGAGGAAAGT  596

seq1  CCAATGTAACATAATTTTTTATAACTTCTTCCCAGCAACATATATTACTT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGTAACATAATTTTTTATAACTTCTTCCCAGCAACATATATTACTT  646

seq1  TTAAAACACAAGCATACTTTCCCTTGTCCCGCGTTATTCTTTTCCATGTG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACACAAGCATACTTTCCCTTGTCCCGCGTTATTCTTTTCCATGTG  696

seq1  CAATTTTCCCGATGTATTGAAGTGATAGCCTATGGTTTGTACCGACTTGG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTTCCCGATGTATTGAAGTGATAGCCTATGGTTTGTACCGACTTGG  746

seq1  AAGTTTATGACTCTTTTGTGGCAGATCAAGAAAACATAATTCATTCATGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTATGACTCTTTTGTGGCAGATCAAGAAAACATAATTCATTCATGG  796

seq1  CTACTTAGTGCTTGGGGAAACCAACCCCTGAACTTAAATAACTATGGTGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTAGTGCTTGGGGAAACCAACCCCTGAACTTAAATAACTATGGTGT  846

seq1  GACCTCTGGAAAGTATCATTTATAGTTCTAAAATTGCCATTATGGAGATA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTCTGGAAAGTATCATTTATAGTTCTAAAATTGCCATTATGGAGATA  896

seq1  ACAAGATGTGCCAAATCTTATAAACCAAACACCAGTCAGCAAATGGGGCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATGTGCCAAATCTTATAAACCAAACACCAGTCAGCAAATGGGGCA  946

seq1  GCTACTATTGCTTCTTTTTTTTTTTCCTTACATTTTGGGTAGTTCTCCAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACTATTGCTTCTTTTTTTTTTTCCTTACATTTTGGGTAGTTCTCCAT  996

seq1  AATACTATTTTTGTTTAAATGAATTCTAAGGTAATTACCCAGCAGAGGAA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTATTTTTGTTTAAATGAATTCTAAGGTAATTACCCAGCAGAGGAA  1046

seq1  AACAATGTTCATTTTATACTTTATTATAAAATACTTCAGGGAGTAAAGAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGTTCATTTTATACTTTATTATAAAATACTTCAGGGAGTAAAGAA  1096

seq1  TTC  1098
      |||
seq2  TTC  1099