BAC Information

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BAC

Clone NameB6Ng01-093A17
Chromosome12 (Build37)
Map Location 106,283,936 - 106,439,703
singlet/doubletdoublet
Overlap geneLOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3
Upstream geneSerpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc, Dicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5
Downstream geneTcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola, Vrk1, LOC100040386, LOC100040404
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093A17.bB6Ng01-093A17.g
ACCDH904638DH904639
length1,1781,012
definitionDH904638|Mus musculus domesticus DNA, BAC clone: B6Ng01-093A17, 5' end.DH904639|Mus musculus domesticus DNA, BAC clone: B6Ng01-093A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,283,936 - 106,285,073)(106,438,689 - 106,439,703)
sequence
agggggggaaggaggggttcctgcggaattcattcgtttattttttttac
aatttaagtagaataaaaaatgtaagtgttttatttcattgctcggctat
ccgacttctgaccctcactcgattataacaacagtgcctgcgttacgtgt
tctcttcttctaccatgtaagttccagggattggactcgggtcgtcagac
ctggcagcaggtgctgtaatggccaacgttaacctgtcagcctcccttgg
cccacggacagagaacttcctggactgctggaggccgtggtttatgggag
atggcagaccccaggttttccccttaaacaaacacaatcctctttattcc
tttctccgctggagcatggtcctaagcgcttcatgaagaacaggcatggg
aatggcactcttttgtgaccagctcttctgaaaaggttttgtcatatctg
tgtgttatggaaaagcttggctgtgcccagagacgcttaccctccaagtc
tggtggcaaggcctcactctcatgagcatctacagctctgttgggaagta
cagtgaagggctttcttaggagccatttgtcccctcccctcctttctcct
ccccactctcttctgccggctttctgtctgcagagccagatctacagact
ccatttgtcgcttcttgggaaatcccacctttgacccgttagtcagaggt
tggatcgcaaaccaatcctgattttatctttttctcttcctttttttcag
accttggatgttgttctcttttaggaagcccccctcccatttcattcctt
ctgtccctcaaatgtctgctgtgtgtctcttggttcatggtcctgcagcc
tcaggggaaactgtaaacgtagcttttattcaccagataggctcaccttt
cctagttcttttctgaactctgcctggctggttcaactcagctgttctgg
cccaaactcctctccaagctgactgattcaattggcctctctcagcttct
ggctgaattgctctgcttagcctcaaataactggcaatctgtcctaatct
ctgactccttcccgtttcttggcctctgtattcacttacaacctggtctc
cgtaaaactgtcctagtaaaactggccctcctctcttttgggactctctt
aagttacctcctccccttctgcctctct
gaattcctgatcctcctgcctcagcttgcctagtacaggaattacatcac
tgtgcccaggtctgtgtggggctggagatctgacccatggctttgcacag
gctagaccactgttctatcaactgatcttaacccctaggcctgtcatgca
tttcctaggtgtccagcctagtttcacatcaacttgacacaggctcaagt
cacctgaaaaagggggacctcaattgaccaagtgcctccataagatctgg
gggcaggcaaacttgtagggcattttcttaatcagtgatcgatgggagag
gacccccaccattgtggttgggtccatccctgagttggtggtcatgggtt
ctgtaagaaatcaagctaagcaagccatggggaacaagcagtaatcaggt
cctgcctccaggtttctgtccctgttctgtggggtcttacttgggaaagt
gtgtttaggaattttttgaggatcttttaaaatgcagagttaggttcagt
taccagttatgtggcacagggctccagactacagttccagtgagtccatg
aaacgtgtgcatagcacccaggtgagaaacaggatgaaggtctcattttg
gccacatgtgcctaaaaacctcaggggagttcattttatcatcccaaggc
caacaaatcaggatcacttaggcagtaccagggtagcagagctttgaaat
aaaaccatgcagccaaccgttggttctctggcagggaggtgctgggggta
ccagccactgtctagctttgtgacaatgggatgggtcagtcaggtgtgcc
caacctttgaaccaaggtagccagaatgtggtccattatatttgtacatg
acgatgtgatagcacagtatccaaaggttggacatccaagtggcctctct
aaaagagggtctgagccatgtgatcgtagaatttaatcaaaacaaaaatt
gagcccacaggtggtttatgggctatgcatagacagctggtctcagtcga
gttgaggactga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_106283936_106285073
seq2: B6Ng01-093A17.b_26_1178

seq1  GAATTCATTCGTTTATTTTTTTTACAACTT-AGT-GAATAAAAAATGTAA  48
      ||||||||||||||||||||||||||| || ||| |||||||||||||||
seq2  GAATTCATTCGTTTATTTTTTTTACAATTTAAGTAGAATAAAAAATGTAA  50

seq1  GTGTTTTATTTCATTGCTCGGCTATCCGACTTCTGACCCTCACTCGATTA  98
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTATTTCATTGCTCGGCTATCCGACTTCTGACCCTCACTCGATTA  100

seq1  TAACAACAGTGCCTGCGTTACGTGTTCTCTTCTTCTACCATGTAAGTTCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACAGTGCCTGCGTTACGTGTTCTCTTCTTCTACCATGTAAGTTCC  150

seq1  AGGGATTGGACTCGGGTCGTCAGACCTGGCAGCAGGTGCTGTAATGGCCA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATTGGACTCGGGTCGTCAGACCTGGCAGCAGGTGCTGTAATGGCCA  200

seq1  ACGTTAACCTGTCAGCCTCCCTTGGCCCACGGACAGAGAACTTCCTGGAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTAACCTGTCAGCCTCCCTTGGCCCACGGACAGAGAACTTCCTGGAC  250

seq1  TGCTGGAGGCCGTGGTTTATGGGAGATGGCAGACCCCAGGTTTTCCCCTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGAGGCCGTGGTTTATGGGAGATGGCAGACCCCAGGTTTTCCCCTT  300

seq1  AAACAAACACAATCCTCTTTATTCCTTTCTCCGCTGGAGCATGGTCCTAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAACACAATCCTCTTTATTCCTTTCTCCGCTGGAGCATGGTCCTAA  350

seq1  GCGCTTCATGAAGAACAGGCATGGGAATGGCACTCTTTTGTGACCAGCTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTTCATGAAGAACAGGCATGGGAATGGCACTCTTTTGTGACCAGCTC  400

seq1  TTCTGAAAAGGTTTTGTCATATCTGTGTGTTATGGAAAAGCTTGGCTGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAAGGTTTTGTCATATCTGTGTGTTATGGAAAAGCTTGGCTGTG  450

seq1  CCCAGAGACGCTTACCCTCCAAGTCTGGTGGCAAGGCCTCACTCTCATGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGACGCTTACCCTCCAAGTCTGGTGGCAAGGCCTCACTCTCATGA  500

seq1  GCATCTACAGCTCTGTTGGGAAGTACAGTGAAGGGCTTTCTTAGGAGCCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTACAGCTCTGTTGGGAAGTACAGTGAAGGGCTTTCTTAGGAGCCA  550

seq1  TTTGTCCCCTCCCCTCCTTTCTCCTCCCCACTCTCTTCTGCCGGCTTTCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCCCTCCCCTCCTTTCTCCTCCCCACTCTCTTCTGCCGGCTTTCT  600

seq1  GTCTGCAGAGCCAGATCTACAGACTCCATTTGTCGCTTCTTGGGAAATCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCAGAGCCAGATCTACAGACTCCATTTGTCGCTTCTTGGGAAATCC  650

seq1  CACCTTTGACCCGTTAGTCAGAGGTTGGATCGCAAACCAATCCTGATTTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTGACCCGTTAGTCAGAGGTTGGATCGCAAACCAATCCTGATTTT  700

seq1  ATCTTTTTCTCTTCCTTTTTTTCAGACCTTGGATGTTGTTCTCTTTTAGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTTCTCTTCCTTTTTTTCAGACCTTGGATGTTGTTCTCTTTTAGG  750

seq1  AAGCCCCCCTCCCATTTCATTCCTTCTGTCCCTCAAATGTCTGCTGTGTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCCCTCCCATTTCATTCCTTCTGTCCCTCAAATGTCTGCTGTGTG  800

seq1  TCTCTTGGTTCATGGTCCTGCAGCCTCAGGGGAAACTGTAAACGTAGCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGGTTCATGGTCCTGCAGCCTCAGGGGAAACTGTAAACGTAGCTT  850

seq1  TTATTCACCAGATAGGCTCACCTTTCCTAGTTC-TTTCTGAACTCTGCCT  897
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTATTCACCAGATAGGCTCACCTTTCCTAGTTCTTTTCTGAACTCTGCCT  900

seq1  GGCTGGTTCAACTCAGCTGTTCTGGCCCAAACTCCTCTCCAAGCTGACTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTTCAACTCAGCTGTTCTGGCCCAAACTCCTCTCCAAGCTGACTG  950

seq1  ATTCAAATTGGCCTCTCTCAGCTTCTGGCTGAATTGCTCTGCTTAGCCTC  997
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTC-AATTGGCCTCTCTCAGCTTCTGGCTGAATTGCTCTGCTTAGCCTC  999

seq1  AAATTAACTGGCAATCTGTTCTAATCTTCTGACTCCTTCCCGTTCTCTGG  1047
      ||| ||||||||||||||| |||||| |||||||||||||||||   |||
seq2  AAA-TAACTGGCAATCTGTCCTAATC-TCTGACTCCTTCCCGTTTCTTGG  1047

seq1  CTCCTGTATTCACTTACAACCT-GTCTCCGTAAAACTGTCCTAGTAAAAC  1096
      |  ||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CCTCTGTATTCACTTACAACCTGGTCTCCGTAAAACTGTCCTAGTAAAAC  1097

seq1  TG--CCTCCTCTC-TCTGGGACTCTCTT-AGTTACCTC----------TC  1132
      ||  ||||||||| | |||||||||||| |||||||||           |
seq2  TGGCCCTCCTCTCTTTTGGGACTCTCTTAAGTTACCTCCTCCCCTTCTGC  1147

seq1  CTCTCT  1138
      ||||||
seq2  CTCTCT  1153

seq1: chr12_106438689_106439703
seq2: B6Ng01-093A17.g_69_1080 (reverse)

seq1  TCAGTCCTCAACTCGACTGGAGACCAGCCTGTCTGTGCATAGCCCATTAA  50
      |||||||||||||||||| |||||||| |||||| ||||||||||| |||
seq2  TCAGTCCTCAACTCGACT-GAGACCAG-CTGTCTATGCATAGCCCA-TAA  47

seq1  CCCACCTGTGGGCTCATTTTTTGGTTTTGATTTAATTCTATCGATCAACA  100
       ||||||||||||||| ||||| ||||||||| ||||||| ||||| |||
seq2  ACCACCTGTGGGCTCAATTTTT-GTTTTGATTAAATTCTA-CGATC-ACA  94

seq1  TGGCTCAGACCCTCTTCTTAGAGAGGCCACTTGGATGTCCAACCTTTGGA  150
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TGGCTCAGACCCTCTT-TTAGAGAGGCCACTTGGATGTCCAACCTTTGGA  143

seq1  TACTGTGCTATCACATCGTCATGTACAAATATAATGGACCACATTCTTGG  200
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TACTGTGCTATCACATCGTCATGTACAAATATAATGGACCACATTC-TGG  192

seq1  CTACCTTTGGTTCAAAGGTTGGGCACACCTGACTGACCCAT-CCATTGTC  249
      ||||| ||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTACC-TTGGTTCAAAGGTTGGGCACACCTGACTGACCCATCCCATTGTC  241

seq1  ACAAAGCTAGACAGTGGCTGGTA-CCCCAGCACCTCCCTGCCAGAGAACC  298
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ACAAAGCTAGACAGTGGCTGGTACCCCCAGCACCTCCCTGCCAGAGAACC  291

seq1  AACGGTTGGCTGCATGGTTTTATTTC-AAGCTCTGCTACCCTGGTACTGC  347
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AACGGTTGGCTGCATGGTTTTATTTCAAAGCTCTGCTACCCTGGTACTGC  341

seq1  CTAAGTGATCCTGATTTGTTGGCCTTGGGATGATAAAATGAACT-CCCTG  396
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTAAGTGATCCTGATTTGTTGGCCTTGGGATGATAAAATGAACTCCCCTG  391

seq1  AGG-TTTTAGGCACATGTGGCC-AAATGAGACCTTCATCCTGTTTCTCAC  444
      ||| |||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGGTTTTTAGGCACATGTGGCCAAAATGAGACCTTCATCCTGTTTCTCAC  441

seq1  CTGGGTGCTATGCACACGTTTCATGGACTCACTGGAACTGTAGTCTGGAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGCTATGCACACGTTTCATGGACTCACTGGAACTGTAGTCTGGAG  491

seq1  CCCTGTGCCACATAACTGGTAACTGAACCTAACTCTGCATTTTAAAAGAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGCCACATAACTGGTAACTGAACCTAACTCTGCATTTTAAAAGAT  541

seq1  CCTCAAAAAATTCCTAAACACACTTTCCCAAGTAAGACCCCACAGAACAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAAAATTCCTAAACACACTTTCCCAAGTAAGACCCCACAGAACAG  591

seq1  GGACAGAAACCTGGAGGCAGGACCTGATTACTGCTTGTTCCCCATGGCTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGAAACCTGGAGGCAGGACCTGATTACTGCTTGTTCCCCATGGCTT  641

seq1  GCTTAGCTTGATTTCTTACAGAACCCATGACCACCAACTCAGGGATGGAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGCTTGATTTCTTACAGAACCCATGACCACCAACTCAGGGATGGAC  691

seq1  CCAACCACAATGGTGGGGGTCCTCTCCCATCGATCACTGATTAAGAAAAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCACAATGGTGGGGGTCCTCTCCCATCGATCACTGATTAAGAAAAT  741

seq1  GCCCTACAAGTTTGCCTGCCCCCAGATCTTATGGAGGCACTTGGTCAATT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTACAAGTTTGCCTGCCCCCAGATCTTATGGAGGCACTTGGTCAATT  791

seq1  GAGGTCCCCCTTTTTCAGGTGACTTGAGCCTGTGTCAAGTTGATGTGAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCCCCCTTTTTCAGGTGACTTGAGCCTGTGTCAAGTTGATGTGAAA  841

seq1  CTAGGCTGGACACCTAGGAAATGCATGACAGGCCTAGGGGTTAAGATCAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTGGACACCTAGGAAATGCATGACAGGCCTAGGGGTTAAGATCAG  891

seq1  TTGATAGAACAGTGGTCTAGCCTGTGCAAAGCCATGGGTCAGATCTCCAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGAACAGTGGTCTAGCCTGTGCAAAGCCATGGGTCAGATCTCCAG  941

seq1  CCCCACACAGACCTGGGCACAGTGATGTAATTCCTGTACTAGGCAAGCTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACACAGACCTGGGCACAGTGATGTAATTCCTGTACTAGGCAAGCTG  991

seq1  AGGCAGGAGGATCAGGAATTC  1015
      |||||||||||||||||||||
seq2  AGGCAGGAGGATCAGGAATTC  1012