BAC Information

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BAC

Clone NameB6Ng01-093C06
Chromosome12 (Build37)
Map Location 34,023,293 - 34,166,423
singlet/doubletdoublet
Overlap geneAtxn7l1, 4930504H06Rik, Twistnb
Upstream gene2010109K11Rik, LOC100043548, Pbef1, LOC100043553, 4933406C10Rik, Sypl, LOC100043109, 1110049B09Rik, Atxn7l4
Downstream geneLOC668801, LOC668806, Ferd3l, Twist1, Hdac9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093C06.bB6Ng01-093C06.g
ACCDH904708DH904709
length945985
definitionDH904708|Mus musculus domesticus DNA, BAC clone: B6Ng01-093C06, 5' end.DH904709|Mus musculus domesticus DNA, BAC clone: B6Ng01-093C06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,165,479 - 34,166,423)(34,023,293 - 34,024,279)
sequence
gaattcagtatttttcaacacacactgtacattatcgtaattaataaata
tgtgcaaaatatacataattaaaatagtgattcaggtacatcatgattcc
tgtcttggagcaaaagatacacaatgtaatgaaagctaaatactatttca
tgtgcttgggccatataatccccttgtgattataataatcggcttttctt
ccattacagaccactgaataaaatgtttactgtccttaattatcacaact
aatagtttcattaacttctatagtaattaaaatttcgatagttaccaacc
actcattcaccagaactttgactactcagttgcacagtagaattaatcta
gctagccacgcagggtagaataaagtccatgtttaaagcaatactccccc
cggtggtgatgaataagaagcgcagagaaattctttagaatttctaaatg
ttacaactccactgactgaaataaattgttttcctcctttttctctttaa
agaaaaaaaactggaaatatatatttttaaataatgatctctgaagaaca
aaacaccatttaatacatagaaagcaaaccttcaagaataagattgcagg
ttacaatgactaatttcaatatgcatattttgatattttagtacattcta
actttaacgtaaaaagactgtgctaggtttttttttccaggtaaaagaaa
gacagacactttcttggatttgaaaaagtcaaaataaaactaaccagtaa
ccccagagctgcctgggactaaaccaccaatcaaagaaaacatatggagg
gactcatggctctagctgcatatgtagcagaggatggactagtcagtcat
caatggaaggagaggcccttggtcctgtgaaggctctatgccccagtata
ggggaatgccagggccaggaatgggagtggatgggttggggagca
gaattcccattgcaaagattttatcccctcctcttccttctgctggcaca
ggggggcctgctcaccaaacacccaggatatttgcttggtagctagctcc
cttatgattcacgaggcctttaggaacacccaggatatttacttggttgg
ctagatcccttatgattcacgattctaattcctttagaattctccactgg
gttcttttgtgcagcatttcccattcttcgtgtttcttctggtggattcc
atctctagatcctgcccgtgagtattggtatcagagtccagctgaagttc
tagaagcaccaatgatacagaaaataatgggcagtagaagaaaactccac
attaggggatcaaataagaggccaggaagtagccaggctggggtacagtt
atggggttagctgccgtgctggctgcagtgtcagctcagtacacctgtgt
gcatgtggctgcctcgcagaacacatctgacaacagcctttgactctaga
ggacacatgcagtctgcactgtgagcatggggtacatggggcaattgctc
tagattatctcatcccaggcgttactctgctgaagccaggagcacttcta
acagagactggaggcctctgaagtaatatggcatgtgtgtatgtgtaatc
tctctctctctatgtacacaatgtatatataatatatatgtatgtaatat
atgtgcatatataacatatatgtatatatacacacatgcatactcacaga
cttgctgaagtataatttaggttgcatgagttttgcgacttgtgaagttg
ttacttggtactttttaaaaaggatggtaaaatgtataaaataaaagtta
ccaccttaaccatgtttaatgtacagtagtgttgagtataatcacactgt
ttcacacccaacatatagcatcttttcatcttgcaaaactgagattctag
accgaggtcgtgtgccctctccccccccctcaccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_34165479_34166423
seq2: B6Ng01-093C06.b_42_986 (reverse)

seq1  TGCTCCCCAACCCATCCACTCCCATTCCTGGCCCTGGCATTCCCCTATAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCCCAACCCATCCACTCCCATTCCTGGCCCTGGCATTCCCCTATAC  50

seq1  TGGGGCATAGAGCCTTCACAGGACCAAGGGCCTCTCCTTCCATTGATGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCATAGAGCCTTCACAGGACCAAGGGCCTCTCCTTCCATTGATGAC  100

seq1  TGACTAGTCCATCCTCTGCTACATATGCAGCTAGAGCCATGAGTCCCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGTCCATCCTCTGCTACATATGCAGCTAGAGCCATGAGTCCCTCC  150

seq1  ATATGTTTTCTTTGATTGGTGGTTTAGTCCCAGGCAGCTCTGGGGTTACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTTCTTTGATTGGTGGTTTAGTCCCAGGCAGCTCTGGGGTTACT  200

seq1  GGTTAGTTTTATTTTGACTTTTTCAAATCCAAGAAAGTGTCTGTCTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGTTTTATTTTGACTTTTTCAAATCCAAGAAAGTGTCTGTCTTTCT  250

seq1  TTTACCTGGAAAAAAAAACCTAGCACAGTCTTTTTACGTTAAAGTTAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTGGAAAAAAAAACCTAGCACAGTCTTTTTACGTTAAAGTTAGAA  300

seq1  TGTACTAAAATATCAAAATATGCATATTGAAATTAGTCATTGTAACCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTAAAATATCAAAATATGCATATTGAAATTAGTCATTGTAACCTGC  350

seq1  AATCTTATTCTTGAAGGTTTGCTTTCTATGTATTAAATGGTGTTTTGTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTATTCTTGAAGGTTTGCTTTCTATGTATTAAATGGTGTTTTGTTC  400

seq1  TTCAGAGATCATTATTTAAAAATATATATTTCCAGTTTTTTTTCTTTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAGATCATTATTTAAAAATATATATTTCCAGTTTTTTTTCTTTAAA  450

seq1  GAGAAAAAGGAGGAAAACAATTTATTTCAGTCAGTGGAGTTGTAACATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAGGAGGAAAACAATTTATTTCAGTCAGTGGAGTTGTAACATTT  500

seq1  AGAAATTCTAAAGAATTTCTCTGCGCTTCTTATTCATCACCACCGGGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCTAAAGAATTTCTCTGCGCTTCTTATTCATCACCACCGGGGGG  550

seq1  AGTATTGCTTTAAACATGGACTTTATTCTACCCTGCGTGGCTAGCTAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGCTTTAAACATGGACTTTATTCTACCCTGCGTGGCTAGCTAGAT  600

seq1  TAATTCTACTGTGCAACTGAGTAGTCAAAGTTCTGGTGAATGAGTGGTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTACTGTGCAACTGAGTAGTCAAAGTTCTGGTGAATGAGTGGTTG  650

seq1  GTAACTATCGAAATTTTAATTACTATAGAAGTTAATGAAACTATTAGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTATCGAAATTTTAATTACTATAGAAGTTAATGAAACTATTAGTTG  700

seq1  TGATAATTAAGGACAGTAAACATTTTATTCAGTGGTCTGTAATGGAAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAATTAAGGACAGTAAACATTTTATTCAGTGGTCTGTAATGGAAGAA  750

seq1  AAGCCGATTATTATAATCACAAGGGGATTATATGGCCCAAGCACATGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGATTATTATAATCACAAGGGGATTATATGGCCCAAGCACATGAAA  800

seq1  TAGTATTTAGCTTTCATTACATTGTGTATCTTTTGCTCCAAGACAGGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATTTAGCTTTCATTACATTGTGTATCTTTTGCTCCAAGACAGGAAT  850

seq1  CATGATGTACCTGAATCACTATTTTAATTATGTATATTTTGCACATATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATGTACCTGAATCACTATTTTAATTATGTATATTTTGCACATATTT  900

seq1  ATTAATTACGATAATGTACAGTGTGTGTTGAAAAATACTGAATTC  945
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTACGATAATGTACAGTGTGTGTTGAAAAATACTGAATTC  945

seq1: chr12_34023293_34024279
seq2: B6Ng01-093C06.g_69_1053

seq1  GAATTCCCATTGCAAAGATTTTATCCCCTCCTCTTCCTTCTGCTGGCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATTGCAAAGATTTTATCCCCTCCTCTTCCTTCTGCTGGCACA  50

seq1  GGGGGGCCTGCTCACCAAACACCCAGGATATTTGCTTGGTAGCTAGCTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGCCTGCTCACCAAACACCCAGGATATTTGCTTGGTAGCTAGCTCC  100

seq1  CTTATGATTCACGAGGCCTTTAGGAACACCCAGGATATTTACTTGGTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGATTCACGAGGCCTTTAGGAACACCCAGGATATTTACTTGGTTGG  150

seq1  CTAGATCCCTTATGATTCACGATTCTAATTCCTTTAGAATTCTCCACTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGATCCCTTATGATTCACGATTCTAATTCCTTTAGAATTCTCCACTGG  200

seq1  GTTCTTTTGTGCAGCATTTCCCATTCTTCGTGTTTCTTCTGGTGGATTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTGTGCAGCATTTCCCATTCTTCGTGTTTCTTCTGGTGGATTCC  250

seq1  ATCTCTAGATCCTGCCCGTGAGTATTGGTATCAGAGTCCAGCTGAAGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTAGATCCTGCCCGTGAGTATTGGTATCAGAGTCCAGCTGAAGTTC  300

seq1  TAGAAGCACCAATGATACAGAAAATAATGGGCAGTAGAAGAAAACTCCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCACCAATGATACAGAAAATAATGGGCAGTAGAAGAAAACTCCAC  350

seq1  ATTAGGGGATCAAATAAGAGGCCAGGAAGTAGCCAGGCTGGGGTACAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGGATCAAATAAGAGGCCAGGAAGTAGCCAGGCTGGGGTACAGTT  400

seq1  ATGGGGTTAGCTGCCGTGCTGGCTGCAGTGTCAGCTCAGTACACCTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGTTAGCTGCCGTGCTGGCTGCAGTGTCAGCTCAGTACACCTGTGT  450

seq1  GCATGTGGCTGCCTCGCAGAACACATCTGACAACAGCCTTTGACTCTAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTGGCTGCCTCGCAGAACACATCTGACAACAGCCTTTGACTCTAGA  500

seq1  GGACACATGCAGTCTGCACTGTGAGCATGGGGTACATGGGGCAATTGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACATGCAGTCTGCACTGTGAGCATGGGGTACATGGGGCAATTGCTC  550

seq1  TAGATTATCTCATCCCAGGCGTTACTCTGCTGAAGCCAGGAGCACTTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTATCTCATCCCAGGCGTTACTCTGCTGAAGCCAGGAGCACTTCTA  600

seq1  ACAGAGACTGGAGGCCTCTGAAGTAATATGGCATGTGTGTATGTGTAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGACTGGAGGCCTCTGAAGTAATATGGCATGTGTGTATGTGTAATC  650

seq1  TCTCTCTCTCTATGTACACAATGTATATATAATATATATGTATGTAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTATGTACACAATGTATATATAATATATATGTATGTAATAT  700

seq1  ATGTGCATATATAACATATATGTATATATACACACATGCATACTCACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCATATATAACATATATGTATATATACACACATGCATACTCACAGA  750

seq1  CTTGCTGAAGTATAATTTAGGTTGCATGAGTTTTGCGACTTGTGAAGTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGAAGTATAATTTAGGTTGCATGAGTTTTGCGACTTGTGAAGTTG  800

seq1  TTACTTGGTACTTTTTAAAAAGGATGGTAAAATGTATAAAATAAAAGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTGGTACTTTTTAAAAAGGATGGTAAAATGTATAAAATAAAAGTTA  850

seq1  CCACCTTAACCATGTTTAATGTACAGTAGTGTTGAGTATAATCACACTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTAACCATGTTTAATGTACAGTAGTGTTGAGTATAATCACACTGT  900

seq1  TTCACACCCAACATATAGCATCTTTTCATCTTGCAAAACTGAGATTCTAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACCCAACATATAGCATCTTTTCATCTTGCAAAACTGAGATTCTAG  950

seq1  ACCGAGGTCGTGTGCCCCTCTCCCCCCCCCCTCCCCC  987
      |||||||||||||| |||||| ||||||||||| |||
seq2  ACCGAGGTCGTGTG-CCCTCT-CCCCCCCCCTCACCC  985