BAC Information

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BAC

Clone NameB6Ng01-093F06
Chromosome12 (Build37)
Map Location 27,735,753 - 27,888,163
singlet/doubletdoublet
Overlap genenone
Upstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009, LOC669327
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093F06.bB6Ng01-093F06.g
ACCDH904847DH904848
length1,0671,085
definitionDH904847|Mus musculus domesticus DNA, BAC clone: B6Ng01-093F06, 5' end.DH904848|Mus musculus domesticus DNA, BAC clone: B6Ng01-093F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,735,753 - 27,736,824)(27,887,079 - 27,888,163)
sequence
gaattcattaccttcagatagaaaccatgcacttccttagttgatattaa
aataagaattcctggaaaattgccatggtgatttaatgaggggaaaaatt
cattcttcgaacacatgttcctggaacaggtggaaaaaaataacctccac
cctttcttccattccaattggctcaggggtataaataggacagttgaaat
gagaaagcttggaggcaaactgaatgagtcttcgtcatttgaaggggaag
agaggagagaaaagggcagagacagaaggatagcacatcttagggaaaac
catcaagtcatgcatggacgggagtaccgtggttcgtattttttgtagcc
ttttgctataaaagaagaaaattacatgtcttttaagtatatgttcacaa
tgcatgatttacatttattaaaatactcaggctaactcacatttttagaa
ctcttgagaaacaggcacaaaagaccaatagcatgagtcctctttgatct
gagccctacccagttcctcaatatgttaccatctgctgggtgtgttttcc
acaacagtcacatccagatgcaagctgaacaccatgagcactaagtacaa
ggaccacatggagtaagggcttaatatgtgttaaactgtaatgtattgct
gtgaatagccattcccataatagaattttagagttggaaacaattaggaa
gatgttggcaagtattaaatttttgtccaggttcagttgggtagaagaat
gtggcttcagggaaatagtatttaggaaaagtgtttggaggaaaaattat
agagaaatatgggcttccataaatacaaagtattatttcaccattattca
caaggtttgaaaactgttcataatggccaatatatgaaaacaactctcat
acaagaaggagtggcaggtcatggagtgaagacatgcagttaagtattag
tcacccttaagaaggcaggaaagtgccatctgcagaacatgcatcagcat
agagggtctctttataagtgcaatgaaccacacacagattgcaaggacta
gatgagatgcatttggg
gaattctccagaagtgtgccagttgttcttttagtacactgtgttaagac
tgggtccatgtgtgtgaagtagctcctgaattctgactatgttttttgta
taaagacagaacctccttcctatgagtgcagggaatcatcagagcatgga
acttaggtacagagagtaggagaagtgttcttagaaagactaaagacaac
tctatgatagtgttgactgacttcttagctacttttctcattttgtgata
aaatacttggtaagggcaacttaagggagaaaatacctttcttggtcatg
attttaagagtgcatgccccatcatggcaggggaggcatgacaatgggat
gggatttgggccattgctgatgggacctcaccaacaagtgggcaaatcag
gaaggaactagaagacaggaagaaaggccagactatctgaaggtctgttt
ttccagaacttcgtttcttcctgctaggttccatgcactcaaggttccac
aatctccccaaacagcaccagcacatgaatctttgaggggacatttccct
tccaaactctgttcctatgtagctgctgttacagaaaaactataaaatgt
actgtataaagatcaacatgaagaatggttctgtcagctatcagaacttc
tgagaaacaaacgcatccaagtcttcctggtaaagatgccaagattgtgg
gtcttattgggaaggtctgggacacttgagaggcaactgagatgatggtg
gcaggttctgtaatctagaattgaaagttgccttgcctaggcatttggga
gcccagtttgctagtatctgtgcagttggagtgaactttcaaagtcaaag
gcaagatataatggatacccctgcagcgatagactttgggcagcccagga
gcccatcctgatgagagttactacagaagtaataaagagacacatcttga
gtggaaaggagttgggattagtgcttggttcagtcttgtattagaatcaa
agagaatcaggaagggagaaggatgcagaacctggctctgcacctgctgg
gctggggagtttcctactacaggactcacgctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_27735753_27736824
seq2: B6Ng01-093F06.b_46_1112

seq1  GAATTCATTACCTTCAGATAGAAACCATGCACTTCCTTAGTTGATATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTACCTTCAGATAGAAACCATGCACTTCCTTAGTTGATATTAA  50

seq1  AATAAGAATTCCTGGAAAATTGCCATGGTGATTTAATGAGGGGAAAAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAATTCCTGGAAAATTGCCATGGTGATTTAATGAGGGGAAAAATT  100

seq1  CATTCTTCGAACACATGTTCCTGGAACAGGTGGAAAAAAATAACCTCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCGAACACATGTTCCTGGAACAGGTGGAAAAAAATAACCTCCAC  150

seq1  CCTTTCTTCCATTCCAATTGGCTCAGGGGTATAAATAGGACAGTTGAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTTCCATTCCAATTGGCTCAGGGGTATAAATAGGACAGTTGAAAT  200

seq1  GAGAAAGCTTGGAGGCAAACTGAATGAGTCTTCGTCATTTGAAGGGGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGCTTGGAGGCAAACTGAATGAGTCTTCGTCATTTGAAGGGGAAG  250

seq1  AGAGGAGAGAAAAGGGCAGAGACAGAAGGATAGCACATCTTAGGGAAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAGAAAAGGGCAGAGACAGAAGGATAGCACATCTTAGGGAAAAC  300

seq1  CATCAAGTCATGCATGGACGGGAGTACCGTGGTTCGTATTTTTTGTAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGTCATGCATGGACGGGAGTACCGTGGTTCGTATTTTTTGTAGCC  350

seq1  TTTTGCTATAAAAGAAGAAAATTACATGTCTTTTAAGTATATGTTCACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTATAAAAGAAGAAAATTACATGTCTTTTAAGTATATGTTCACAA  400

seq1  TGCATGATTTACATTTATTAAAATACTCAGGCTAACTCACATTTTTAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGATTTACATTTATTAAAATACTCAGGCTAACTCACATTTTTAGAA  450

seq1  CTCTTGAGAAACAGGCACAAAAGACCAATAGCATGAGTCCTCTTTGATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGAGAAACAGGCACAAAAGACCAATAGCATGAGTCCTCTTTGATCT  500

seq1  GAGCCCTACCCAGTTCCTCAATATGTTACCATCTGCTGGGTGTGTTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCTACCCAGTTCCTCAATATGTTACCATCTGCTGGGTGTGTTTTCC  550

seq1  ACAACAGTCACATCCAGATGCAAGCTGAACACCATGAGCACTAAGTACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGTCACATCCAGATGCAAGCTGAACACCATGAGCACTAAGTACAA  600

seq1  GGACCACATGGAGTAAGGGCTTAATATGTGTTAAACTGTAATGTATTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCACATGGAGTAAGGGCTTAATATGTGTTAAACTGTAATGTATTGCT  650

seq1  GTGAATAGCCATTCCCATAATAGAATTTTAGAGTTGGAAACAATTAGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATAGCCATTCCCATAATAGAATTTTAGAGTTGGAAACAATTAGGAA  700

seq1  GATGTTGGCAAGTATTAAATTTTTGTCCAGGTTCAGTTGGGTAGAAGAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTGGCAAGTATTAAATTTTTGTCCAGGTTCAGTTGGGTAGAAGAAT  750

seq1  GTGGCTTCAGGGAAATAGTATTTAGGAAAAGTGTTTGGAGGAAAAATTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTTCAGGGAAATAGTATTTAGGAAAAGTGTTTGGAGGAAAAATTAT  800

seq1  AGAGAAATATGGGCTTCCATAAATACAAAGTATTATTTCACCATTATTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAATATGGGCTTCCATAAATACAAAGTATTATTTCACCATTATTCA  850

seq1  CAAGG-TTGAAAACTGTTCATAATGGCCAATATATGAAAACAACTCTCAT  899
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTTGAAAACTGTTCATAATGGCCAATATATGAAAACAACTCTCAT  900

seq1  ACAAGAAGGAGTGGCAAGGTCATGGAGTGAAGACATGCAGTTAAGTATTA  949
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ACAAGAAGGAGTGGC-AGGTCATGGAGTGAAGACATGCAGTTAAGTATTA  949

seq1  GTCACCCTTAAAGAAGGCAGGAAAGTTGCCATCTGCAAGAACATGCATCA  999
      ||||||||| ||||||||||||||| |||||||||| |||||||||||||
seq2  GTCACCCTT-AAGAAGGCAGGAAAG-TGCCATCTGC-AGAACATGCATCA  996

seq1  GCATAGAGGGTCTCTTTATTAAGTGCAATGAACCACACACAGATTGCAAA  1049
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  GCATAGAGGGTCTCTTTA-TAAGTGCAATGAACCACACACAGATTGCAAG  1045

seq1  GACTAGATTGAGATGCATATGGG  1072
      ||||||| |||||||||| ||||
seq2  GACTAGA-TGAGATGCATTTGGG  1067

seq1: chr12_27887079_27888163
seq2: B6Ng01-093F06.g_67_1151 (reverse)

seq1  AAGAGC-TGAGTCCTGTTAGCTAGGAAACTCACCAG-CCAGCAGGTGCAG  48
      |||||| ||||||||| ||| |||||||||| |||| |||||||||||||
seq2  AAGAGCGTGAGTCCTG-TAG-TAGGAAACTCCCCAGCCCAGCAGGTGCAG  48

seq1  AGCATGGCTCTTGCATGCTTCTCCCCTTCCTGATTCTCTCTGAATCTAAT  98
      |||  || || ||||| ||||| |||||||||||||||| ||| ||||||
seq2  AGCCAGGTTC-TGCATCCTTCT-CCCTTCCTGATTCTCTTTGATTCTAAT  96

seq1  ACAAGACTGAACC-AGCACTAATCCCAACTCCTTTCCACTCAAGATGTGT  147
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACAAGACTGAACCAAGCACTAATCCCAACTCCTTTCCACTCAAGATGTGT  146

seq1  CTCTTTATTACTTCTGTAGTAACTCTCATCAGGATGGGCTCCTGGGCTGC  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATTACTTCTGTAGTAACTCTCATCAGGATGGGCTCCTGGGCTGC  196

seq1  CCAAAGTCTATCGCTGCAGGGGTATCCATTATATCTTGCCTTTGACTTTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGTCTATCGCTGCAGGGGTATCCATTATATCTTGCCTTTGACTTTG  246

seq1  AAAGTTCACTCCAACTGCACAGATACTAGC-AACTGGGCTCCCAAATGCC  296
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AAAGTTCACTCCAACTGCACAGATACTAGCAAACTGGGCTCCCAAATGCC  296

seq1  TAGGCAAGGCAACTTTCAATTCTAGATTACAGAACCTGCCACCATCATCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCAAGGCAACTTTCAATTCTAGATTACAGAACCTGCCACCATCATCT  346

seq1  CAGTTGCCTCTCAAGTGTCCCAGACCTTCCCAATAAGACCCACAATCTTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCCTCTCAAGTGTCCCAGACCTTCCCAATAAGACCCACAATCTTG  396

seq1  GCATCTTTACCAGGAAGACTTGGATGCGTTTGTTTCTCAGAAGTTCTGAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTTACCAGGAAGACTTGGATGCGTTTGTTTCTCAGAAGTTCTGAT  446

seq1  AGCTGACAGAACCATTCTTCATGTTGATCTTTATACAGTACATTTTATAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACAGAACCATTCTTCATGTTGATCTTTATACAGTACATTTTATAG  496

seq1  TTTTTCTGTAACAGCAGCTACATAGGAACAGAGTTTGGAAGGGAAATGTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTGTAACAGCAGCTACATAGGAACAGAGTTTGGAAGGGAAATGTC  546

seq1  CCCTCAAAGATTCATGTGCTGGTGCTGTTTGGGGAGATTGTGGAACCTTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAAAGATTCATGTGCTGGTGCTGTTTGGGGAGATTGTGGAACCTTG  596

seq1  AGTGCATGGAACCTAGCAGGAAGAAACGAAGTTCTGGAAAAACAGACCTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATGGAACCTAGCAGGAAGAAACGAAGTTCTGGAAAAACAGACCTT  646

seq1  CAGATAGTCTGGCCTTTCTTCCTGTCTTCTAGTTCCTTCCTGATTTGCCC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGTCTGGCCTTTCTTCCTGTCTTCTAGTTCCTTCCTGATTTGCCC  696

seq1  ACTTGTTGGTGAGGTCCCATCAGCAATGGCCCAAATCCCATCCCATTGTC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTGGTGAGGTCCCATCAGCAATGGCCCAAATCCCATCCCATTGTC  746

seq1  ATGCCTCCCCTGCCATGATGGGGCATGCACTCTTAAAATCATGACCAAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTCCCCTGCCATGATGGGGCATGCACTCTTAAAATCATGACCAAGA  796

seq1  AAGGTATTTTCTCCCTTAAGTTGCCCTTACCAAGTATTTTATCACAAAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATTTTCTCCCTTAAGTTGCCCTTACCAAGTATTTTATCACAAAAT  846

seq1  GAGAAAAGTAGCTAAGAAGTCAGTCAACACTATCATAGAGTTGTCTTTAG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAGTAGCTAAGAAGTCAGTCAACACTATCATAGAGTTGTCTTTAG  896

seq1  TCTTTCTAAGAACACTTCTCCTACTCTCTGTACCTAAGTTCCATGCTCTG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTAAGAACACTTCTCCTACTCTCTGTACCTAAGTTCCATGCTCTG  946

seq1  ATGATTCCCTGCACTCATAGGAAGGAGGTTCTGTCTTTATACAAAAAACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTCCCTGCACTCATAGGAAGGAGGTTCTGTCTTTATACAAAAAACA  996

seq1  TAGTCAGAATTCAGGAGCTACTTCACACACATGGACCCAGTCTTAACACA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAGAATTCAGGAGCTACTTCACACACATGGACCCAGTCTTAACACA  1046

seq1  GTGTACTAAAAGAACAACTGGCACACTTCTGGAGAATTC  1085
      |||||||||||||||||||||||||||||||||||||||
seq2  GTGTACTAAAAGAACAACTGGCACACTTCTGGAGAATTC  1085