BAC Information

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BAC

Clone NameB6Ng01-094I13
Chromosome12 (Build37)
Map Location 40,561,426 - 40,746,930
singlet/doubletdoublet
Overlap geneLOC100043148
Upstream geneEtv1, LOC100043145
Downstream geneArl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277, Dock4, LOC638487
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094I13.bB6Ng01-094I13.g
ACCDH905730DH905731
length1,099945
definitionDH905730|Mus musculus domesticus DNA, BAC clone: B6Ng01-094I13, 5' end.DH905731|Mus musculus domesticus DNA, BAC clone: B6Ng01-094I13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,745,815 - 40,746,930)(40,561,426 - 40,562,070)
sequence
gaattcatccagcctgttgtccactttcaccatagctcaacctggcctct
ggtaagctgactcagaacactgacagtgacttctagtagttgagacacca
tctaacccaagatctattttactgtaaagtatcagatgctttgtgtaact
taaagatagaaaatagaatggctatgcaggtatattcactctccgaggat
tctcactggtcagctcacagtttggctaagttgaatgatggtaattcagc
gaccacatctataccaaaacccaatgagttggacactcgaaattagcagc
atgaagctggactcaatagcacacaccttttttccccaacacttgggagg
cagaggcagttggatctatagatgccagcctggtctacagagcaagttct
aggacagccaggactacatagaggactctattttgaaaaaaaaaaaaaca
gtgatatgaattacatcttaataaagctctatcccaataaagctgtattt
tttaaaaacaaatgaattacaagtgaaaaatgagtttttactttttaccc
atactttaaatacatttatctaaaccccctcacatgaagacttgattcta
tcacttaagaaatttagagaatttcctagagcatacattctagggccacc
agaggatttgttgatgtattactgaaagatcttgagaatagctcacccca
acccatagtttctgaaagacagagtagatgtcttgccttccatggcatcc
tcttatcatgtaatctcagacagcaaagctcactcttccctgctccaagg
taggtccttcagaacacacacacacacacacacacacacacacacacaca
cacacacacacacacacacacacagagagagagagagagagagagagaga
gagagagagagagagctatgcatttccagtcaagttcctgtgatggttgg
tgtgtcagctggttcaccttgaacagcctcaggcaccccatgaggggtta
tctagatgtattagcttttgggatgtctgtggatattgctcccaggttga
tgatgtgggaagtcctgtgatactgtggcagtacctgactgtgttaaga
gaattctgtgctaaatctgataggttatttcttgtgggaagccacatgtg
ccgttgcagggtggcgctggttaccgctggccaccatgcatacatagaca
gtaaagttttttgccaagatgaggttttgaaaattaaccaatcagatgag
agataagttaaccaatcagatgagagataagttaaccaatcagatgagag
agaagtaagttaaccaatcagatgtaggcatgcaaatgaggtggtaagca
taacccatgcataaccaatccaggtgtgagacacgcctctcctaggccta
tataagcagcaccagttctgggcttgggggtctcttcgcctctgcaatca
agctttcccaataaacgtgtacagaaggattctattgcagcatcgttctt
gctggcaaatcagggtacgcgcaagaatttctctgccagtgaaatgagcc
aattcaagccacattagtatatatttaaaggtatgtttaatgggaagctg
ttattgtgagctcgctggccccaaggattgaggccagggtagtcaccatg
cagagaggggggtggaaagaaatagagaaagagtacacaggcaaagagag
aaaaggagagtgagagagctcaaaatgtctggattagataagaggagcct
ctggaggcagggcagtccaacccctgggctagaaagttcaagtttggggg
cagggtataccagctagggactgagggatgctgggagaaactggaggcca
gatctgctttgatatataaaatatgcacctcactcccttgttcctatctt
aaaccaaacaaaaaccatctgacccaggtatttttgttgttgtcttgttt
gtttgttgtgagggtggaagtgggaagacttttatggctgcctgatttct
tggggttatagtctattcaattgctatctgactatgataactttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_40745815_40746930
seq2: B6Ng01-094I13.b_46_1144 (reverse)

seq1  TCTTTACACAGTCCAGGGTACTGCCCACAGTTAACACAGGGCTTCCCACA  50
      |||| ||||||||   ||||||| |||||| || |||||| |||||||||
seq2  TCTTAACACAGTC--AGGTACTG-CCACAG-TATCACAGGACTTCCCACA  46

seq1  TCAATCAACCTTGTGGAAGCAATAGTCCACAGACATCCCAAAAGCTAATA  100
      || |||||||   ||| ||||||| |||||||||||||||||||||||||
seq2  TC-ATCAACC---TGGGAGCAATA-TCCACAGACATCCCAAAAGCTAATA  91

seq1  CAATCTAGATAACCCCTCATGGGGTGCCCTGAGGCTTGTTTCAAGGTGAA  150
      | |||||||||||||||||||||||| |||||||||   ||||||||| |
seq2  C-ATCTAGATAACCCCTCATGGGGTG-CCTGAGGCT--GTTCAAGGTG-A  136

seq1  ACCAGCTGACACCACCAACCATCACAGGAACCTTGACTGGAAAATGCATA  200
      ||||||||||| |||||||||||||||||| ||||||||| |||||||||
seq2  ACCAGCTGACA-CACCAACCATCACAGGAA-CTTGACTGG-AAATGCATA  183

seq1  TGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGT  250
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -GCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGT  232

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  282

seq1  GTGTTCTGAAGGACCTACCTTGGAGCAGGGAAGAGTGAGCTTTGCTGTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTGAAGGACCTACCTTGGAGCAGGGAAGAGTGAGCTTTGCTGTCT  332

seq1  GAGATTACATGATAAGAGGATGCCATGGAAGGCAAGACATCTACTCTGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTACATGATAAGAGGATGCCATGGAAGGCAAGACATCTACTCTGTC  382

seq1  TTTCAGAAACTATGGGTTGGGGTGAGCTATTCTCAAGATC-TTCAGTAAT  449
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTCAGAAACTATGGGTTGGGGTGAGCTATTCTCAAGATCTTTCAGTAAT  432

seq1  ACATCAACAAATCCTCTGGTGGCCCTAGAATGTATGCTCTAGGAAATTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAACAAATCCTCTGGTGGCCCTAGAATGTATGCTCTAGGAAATTCT  482

seq1  CTAAATTTCTTAAGTGATAGAATCAAGTCTTCATGTGAGGGGGTTTAGAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTTCTTAAGTGATAGAATCAAGTCTTCATGTGAGGGGGTTTAGAT  532

seq1  AAATGTATTTAAAGTATGGGTAAAAAGTAAAAACTCATTTTTCACTTGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTATTTAAAGTATGGGTAAAAAGTAAAAACTCATTTTTCACTTGTA  582

seq1  ATTCATTTGTTTTTAAAAAATACAGCTTTATTGGGATAGAGCTTTATTAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTGTTTTTAAAAAATACAGCTTTATTGGGATAGAGCTTTATTAA  632

seq1  GATGTAATTCATATCACTGTTTTTTTTTTTTTCAAAATAGAGTCCTCTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTAATTCATATCACTGTTTTTTTTTTTTTCAAAATAGAGTCCTCTAT  682

seq1  GTAGTCCTGGCTGTCCTAGAACTTGCTCTGTAGACCAGGCTGGCATCTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCCTGGCTGTCCTAGAACTTGCTCTGTAGACCAGGCTGGCATCTAT  732

seq1  AGATCCAACTGCCTCTGCCTCCCAAGTGTTGGGGAAAAAAGGTGTGTGCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCAACTGCCTCTGCCTCCCAAGTGTTGGGGAAAAAAGGTGTGTGCT  782

seq1  ATTGAGTCCAGCTTCATGCTGCTAATTTCGAGTGTCCAACTCATTGGGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTCCAGCTTCATGCTGCTAATTTCGAGTGTCCAACTCATTGGGTT  832

seq1  TTGGTATAGATGTGGTCGCTGAATTACCATCATTCAACTTAGCCAAACTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATAGATGTGGTCGCTGAATTACCATCATTCAACTTAGCCAAACTG  882

seq1  TGAGCTGACCAGTGAGAATCCTCGGAGAGTGAATATACCTGCATAGCCAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTGACCAGTGAGAATCCTCGGAGAGTGAATATACCTGCATAGCCAT  932

seq1  TCTATTTTCTATCTTTAAGTTACACAAAGCATCTGATACTTTACAGTAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTCTATCTTTAAGTTACACAAAGCATCTGATACTTTACAGTAAA  982

seq1  ATAGATCTTGGGTTAGATGGTGTCTCAACTACTAGAAGTCACTGTCAGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCTTGGGTTAGATGGTGTCTCAACTACTAGAAGTCACTGTCAGTG  1032

seq1  TTCTGAGTCAGCTTACCAGAGGCCAGGTTGAGCTATGGTGAAAGTGGACA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAGTCAGCTTACCAGAGGCCAGGTTGAGCTATGGTGAAAGTGGACA  1082

seq1  ACAGGCTGGATGAATTC  1116
      |||||||||||||||||
seq2  ACAGGCTGGATGAATTC  1099

seq1: chr12_40561426_40562070
seq2: B6Ng01-094I13.g_382_1014

seq1  CAGTTCTGGGCTTGGGGGTCTCTTCGCCTCTGCAATCAAGCTTTCCCAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTGGGCTTGGGGGTCTCTTCGCCTCTGCAATCAAGCTTTCCCAAT  50

seq1  AAACGTGTACAGAAGGATTCTATTGCAGCATCGTTCTTGCTGGCAAATCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGTGTACAGAAGGATTCTATTGCAGCATCGTTCTTGCTGGCAAATCA  100

seq1  GGGTACGCGCAAGAATTTCTCTGCCAGTGAAATGAGCCAATTCAAGCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACGCGCAAGAATTTCTCTGCCAGTGAAATGAGCCAATTCAAGCCAC  150

seq1  ATTAGTATATATTTAAAGGTATGTTTAATGGGAAGCTGTTATTGTGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTATATATTTAAAGGTATGTTTAATGGGAAGCTGTTATTGTGAGCT  200

seq1  CGCTGGCCCCAAGGATTGAGGCCAGGGTAGTCACCATGCAGAGAGGGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGGCCCCAAGGATTGAGGCCAGGGTAGTCACCATGCAGAGAGGGGGG  250

seq1  TGGAAAGAAATAGAGAAAGAGTACACAGGCAAAGAGAGAAAAGGAGAGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAGAAATAGAGAAAGAGTACACAGGCAAAGAGAGAAAAGGAGAGTG  300

seq1  AGAGAGCTCAAAATGTCTGGATTAGATAAGAGGAGCCTCTGGAGGCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGCTCAAAATGTCTGGATTAGATAAGAGGAGCCTCTGGAGGCAGGG  350

seq1  CAGTCCAACCCCTGGGCTAGAAAGTTCAAGTTTGGGGGCAGGGTATACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCAACCCCTGGGCTAGAAAGTTCAAGTTTGGGGGCAGGGTATACCA  400

seq1  GCTAGGGACTGAGGGATGCTGGGAGAAACTGGAGGCCAGATCTGCTTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGGACTGAGGGATGCTGGGAGAAACTGGAGGCCAGATCTGCTTTGA  450

seq1  TATATAAAATATGCACCTCACTCCCTTGTTCCTATCTTAAACCAAACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAAAATATGCACCTCACTCCCTTGTTCCTATCTTAAACCAAACAAA  500

seq1  AACCATCTGACCCAGGTATTTTTTGTTGTTGTTCTTGTTTGTTTGTTTGT  550
      |||||||||||||||||| |||||||||||| |||||||||||||||   
seq2  AACCATCTGACCCAGGTA-TTTTTGTTGTTG-TCTTGTTTGTTTGTT--G  546

seq1  TGAGGGTGG-AGTTGGGAGACTTTTAATGGCTGCCTGTATTTTCTTGGGG  599
      ||||||||| ||| || |||||||| |||||||||||   |||||| |||
seq2  TGAGGGTGGAAGTGGGAAGACTTTT-ATGGCTGCCTG--ATTTCTT-GGG  592

seq1  GTTATAGGTCTATTTACATTGCTTATCTGATCTTGATTTAACTTTG  645
      |||||| ||||||| | ||||| |||||||   |||  ||||||||
seq2  GTTATA-GTCTATTCA-ATTGC-TATCTGACTATGA--TAACTTTG  633