BAC Information

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BAC

Clone NameB6Ng01-097K20
Chromosome12 (Build37)
Map Location 73,009,333 - 73,189,344
singlet/doubletdoublet
Overlap geneDaam1, LOC666220, Gpr135, LOC100041239, 2810055F11Rik, 1200003C05Rik
Upstream geneActr10, Psma3, 3110056K07Rik, Arid4a, Timm9, LOC100041035, 2700049A03Rik, LOC666162, Dact1, LOC100041190, LOC666213
Downstream gene4930403N07Rik, Rtn1, Lrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097K20.bB6Ng01-097K20.g
ACCDH907981DH907982
length1,109848
definitionDH907981|Mus musculus domesticus DNA, BAC clone: B6Ng01-097K20, 5' end.DH907982|Mus musculus domesticus DNA, BAC clone: B6Ng01-097K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,009,333 - 73,010,443)(73,188,504 - 73,189,344)
sequence
gaattctatgaactgtgtacatgcaatcagatagaaagttagcttgtcaa
ggaccattataaagcaaaacaaaacacaacaagaacaacctccaaacata
ataaacatgcaaaatggtgagtggatgagcagggtaccccaagggcttta
gcttctccttccttgtttttcttatgctccaccctatattctgagattgt
acaaatgccatcctagcctctgtctaaatgtacattcatgtccatgtgtg
ggtgagctgacctcattagaaatagactactggtctaccgcaccctatag
acccaccagtaggctggaggtaatcttagatgtaatcttacacttcagtc
acttaaaatctcagaaaacagagtttgccacaaagtactaatcttcctac
tcgtttaagacctttattgtatattatttcaaaatgccttcctttgcttt
atctagcaaatcaatgtgtttccttttattgacgtgtcccgtactgattg
ttttctgattaatgtgtgtttctcctttgacctacttggtcacacggaaa
ggtaagtgtagcgccagtgaggtttctttgtccacactctttcagagtgg
aggcttaagaatctgttttgttagggctaagcctagaactgtggttccca
cagctggccttccctcagagctcttttcttcatttaaaaaagtctttgtt
caagatattaggggaaaaaaaaacccatgttctataataagtgaaaagac
cattactatctttgttgagaagaatctttacgggtttctgcgagctttgg
tttttagaaaacaggctttctagagaaagagggatggcgctgagtcagca
caaagcattatcttgtcactcattaggtcattcattgtcagttaacgtca
aagatctagcccaaaagaataaaatgaagaagcaagtttttgtggcctct
atgagagaagccatcctggctgagtggtggtgagatgcatatgcagcctg
gtgttctgactttctgctaagcacgcttgttatcttagtgggaaacccaa
caactcaggactaagtctcctctggtgtccttctcctagtaacaaaagct
agggcatgg
gaattctggaaactcttcagagagtaatggtagggctctgagaggcaggg
taggggtggttggtcgttgaggaggtttgggtgcagtcagtggctatgtt
caaagaagaaacaagaagaaattcaaggagctctattcccctcccccatc
cttccttctctcctatctggtgacaggggatgaaactgggagaaaggagg
accagagagtgtatgtcgggggaaaaagaatctgcaaagcagcaaaggcc
agctacaagcaaagaagaagcaagaaaaaaattagattcagagatcttta
ttatctaaacacccccccccccccacctgtgcatctttctctcctatcta
ttgataaggagtggtaaaactacaaagaccagctacagtcactattcttc
atttggccaaatagagacactgggcacacagactcattttttattcataa
cagaaatgctgaattgtccacattctgaaaagagaacttcagagcagaag
gtaggtctttaaaacaaatcaattcacctccatatcaaagcattagccca
gttttttatgatttttgacaagggtagatcccatcagtgctggcactgag
cttctgagcaattacttgagaacaatcaatttcttgcaatcaatttcttt
aaaggggatgaggggaattaaaaacagctcttttaagacaaaaacccgag
gatctccaaattatctaagactttcatcgaagagaaattactcctctgtt
tcagtgacacctgatcctctacaccaattatggaaagtgctgctcaaagc
cacaaaggtacttcagaggacgatggcagtgaggctggtctttctgta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_73009333_73010443
seq2: B6Ng01-097K20.b_48_1156

seq1  GAATTCTATGAACTGTGTACATGCAATCAGATAGAAAGTTAGCTTGTCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGAACTGTGTACATGCAATCAGATAGAAAGTTAGCTTGTCAA  50

seq1  GGACCATTATAAAGCAAAACAAAACACAACAAGAACAACCTCCAAACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCATTATAAAGCAAAACAAAACACAACAAGAACAACCTCCAAACATA  100

seq1  ATAAACATGCAAAATGGTGAGTGGATGAGCAGGGTACCCCAAGGGCTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACATGCAAAATGGTGAGTGGATGAGCAGGGTACCCCAAGGGCTTTA  150

seq1  GCTTCTCCTTCCTTGTTTTTCTTATGCTCCACCCTATATTCTGAGATTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTCCTTCCTTGTTTTTCTTATGCTCCACCCTATATTCTGAGATTGT  200

seq1  ACAAATGCCATCCTAGCCTCTGTCTAAATGTACATTCATGTCCATGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGCCATCCTAGCCTCTGTCTAAATGTACATTCATGTCCATGTGTG  250

seq1  GGTGAGCTGACCTCATTAGAAATAGACTACTGGTCTACCGCACCCTATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAGCTGACCTCATTAGAAATAGACTACTGGTCTACCGCACCCTATAG  300

seq1  ACCCACCAGTAGGCTGGAGGTAATCTTAGATGTAATCTTACACTTCAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACCAGTAGGCTGGAGGTAATCTTAGATGTAATCTTACACTTCAGTC  350

seq1  ACTTAAAATCTCAGAAAACAGAGTTTGCCACAAAGTACTAATCTTCCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAAATCTCAGAAAACAGAGTTTGCCACAAAGTACTAATCTTCCTAC  400

seq1  TCGTTTAAGACCTTTATTGTATATTATTTCAAAATGCCTTCCTTTGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTAAGACCTTTATTGTATATTATTTCAAAATGCCTTCCTTTGCTTT  450

seq1  ATCTAGCAAATCAATGTGTTTCCTTTTATTGACGTGTCCCGTACTGATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGCAAATCAATGTGTTTCCTTTTATTGACGTGTCCCGTACTGATTG  500

seq1  TTTTCTGATTAATGTGTGTTTCTCCTTTGACCTACTTGGTCACACGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGATTAATGTGTGTTTCTCCTTTGACCTACTTGGTCACACGGAAA  550

seq1  GGTAAGTGTAGCGCCAGTGAGGTTTCTTTGTCCACACTCTTTCAGAGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGTGTAGCGCCAGTGAGGTTTCTTTGTCCACACTCTTTCAGAGTGG  600

seq1  AGGCTTAAGAATCTGTTTTGTTAGGGCTAAGCCTAGAACTGTGGTTCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTAAGAATCTGTTTTGTTAGGGCTAAGCCTAGAACTGTGGTTCCCA  650

seq1  CAGCTGGCCTTCCCTCAGAGCTCTTTTCTTCATTTAAAAAAGTCTTTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGGCCTTCCCTCAGAGCTCTTTTCTTCATTTAAAAAAGTCTTTGTT  700

seq1  CAAGATATTAGGGGAAAAAAAAACCCATGTTCTATAATAAGTGAAAAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATATTAGGGGAAAAAAAAACCCATGTTCTATAATAAGTGAAAAGAC  750

seq1  CATTACTATCTTTGTTGAGAAGAATCTTTACGGGTTTCTGCGAGCTTTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTACTATCTTTGTTGAGAAGAATCTTTACGGGTTTCTGCGAGCTTTGG  800

seq1  TTTTTAGAAAACAGGCTTTCTAGAG-AAGAGGGATGGCGCTGAGTCAGCA  849
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTTTAGAAAACAGGCTTTCTAGAGAAAGAGGGATGGCGCTGAGTCAGCA  850

seq1  CAAAGCATTATCTTGTCACTCATTAGGTCATTCATTGTCAGTTAACGTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCATTATCTTGTCACTCATTAGGTCATTCATTGTCAGTTAACGTCA  900

seq1  AAGATCTAGCCCAAAAGAATAAAATGAAGAAGCAAGTTTTTGTGGCCTCT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTAGCCCAAAAGAATAAAATGAAGAAGCAAGTTTTTGTGGCCTCT  950

seq1  ATGAGGAGGAGGCCATCCTGGCTGAGGTGTGGTGAGATGCATATGCAGCC  999
      |||||   || |||||||||||||||  ||||||||||||||||||||||
seq2  ATGAG--AGAAGCCATCCTGGCTGAGTGGTGGTGAGATGCATATGCAGCC  998

seq1  TGGTGTTCTTGACTTTCTGCTAAGCACGCTTGTTAATCTTAGTGGGAAAC  1049
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  TGGTGTTC-TGACTTTCTGCTAAGCACGCTTGTT-ATCTTAGTGGGAAAC  1046

seq1  CCAACAACCCAGGACTAAGTCTCCTCCTGGTG--CCTCTTCTAGTAACAA  1097
      |||||||| |||||||||||||||| ||||||  | ||| ||||||||||
seq2  CCAACAACTCAGGACTAAGTCTCCT-CTGGTGTCCTTCTCCTAGTAACAA  1095

seq1  AAGCCAGGGCAAGG  1111
      |||| |||||| ||
seq2  AAGCTAGGGCATGG  1109

seq1: chr12_73188504_73189344
seq2: B6Ng01-097K20.g_68_915 (reverse)

seq1  TACAGAA--GCCAGCCTCACTGCCATCGTCCTCTG-AGTACCTTTGTGGC  47
      |||||||   ||||||||||||||||||||||||| ||||||||||||||
seq2  TACAGAAAGACCAGCCTCACTGCCATCGTCCTCTGAAGTACCTTTGTGGC  50

seq1  TTTGAGCAGCACTTTCCATAATTGGTGTAGAGGATCAGGTGTCACTGATA  97
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TTTGAGCAGCACTTTCCATAATTGGTGTAGAGGATCAGGTGTCACTGAAA  100

seq1  CAGAGGAGTAATTTCTCTTCGATG-AAGTCTTAGATAATTTGGAGATCCT  146
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CAGAGGAGTAATTTCTCTTCGATGAAAGTCTTAGATAATTTGGAGATCCT  150

seq1  CGGGTTTTTGTCTTAAAAGAGCTGTTTTTAATTCCCCTCATCCC--TTTA  194
      ||||||||||||||||||||||||||||||||||||||||||||  || |
seq2  CGGGTTTTTGTCTTAAAAGAGCTGTTTTTAATTCCCCTCATCCCCTTTAA  200

seq1  AGAAATTGATTGCAAGAAATTGATTGTTCTCAAGTAATTGCTCAGAAGCT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTGATTGCAAGAAATTGATTGTTCTCAAGTAATTGCTCAGAAGCT  250

seq1  CAGTGCCAGCACTGATGGGATCTACCCTTGTCAAAAATCAT-AAAAACTG  293
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAGTGCCAGCACTGATGGGATCTACCCTTGTCAAAAATCATAAAAAACTG  300

seq1  GGCTAATGCTTTGATATGGAGGTGAATTGATTTGTTTTAAAGACCTACCT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAATGCTTTGATATGGAGGTGAATTGATTTGTTTTAAAGACCTACCT  350

seq1  TCTGCTCTGAAGTTCTCTTTTCAGAATGTGGACAATTCAGCATTTCTGTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCTGAAGTTCTCTTTTCAGAATGTGGACAATTCAGCATTTCTGTT  400

seq1  ATGAATAAAAAATGAGTCTGTGTGCCCAGTGTCTCTATTTGGCCAAATGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATAAAAAATGAGTCTGTGTGCCCAGTGTCTCTATTTGGCCAAATGA  450

seq1  AGAATAGTGACTGTAGCTGGTCTTTGTAGTTTTACCACTCCTTATCAATA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGTGACTGTAGCTGGTCTTTGTAGTTTTACCACTCCTTATCAATA  500

seq1  GATAGGAGAGAAAGATGCACAGGTGGGGGGGGGGGGGTGTTTAGATAATA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGAGAGAAAGATGCACAGGTGGGGGGGGGGGGGTGTTTAGATAATA  550

seq1  AAGATCTCTGAATCTAATTTTTTTCTTGCTTCTTCTTTGCTTGTAGCTGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTCTGAATCTAATTTTTTTCTTGCTTCTTCTTTGCTTGTAGCTGG  600

seq1  CCTTTGCTGCTTTGCAGATTCTTTTTCCCCCGACATACACTCTCTGGTCC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCTGCTTTGCAGATTCTTTTTCCCCCGACATACACTCTCTGGTCC  650

seq1  TCCTTTCTCCCAGTTTCATCCCCTGTCACCAGATAGGAGAGAAGGAAGGA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTCTCCCAGTTTCATCCCCTGTCACCAGATAGGAGAGAAGGAAGGA  700

seq1  TGGGGGAGGGGAATAGAGCTCCTTGAATTTCTTCTTGTTTCTTCTTTGAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAGGGGAATAGAGCTCCTTGAATTTCTTCTTGTTTCTTCTTTGAA  750

seq1  CATAGCCACTGACTGCACCCAAACCTCCTCAACGACCAACCACCCCTACC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCCACTGACTGCACCCAAACCTCCTCAACGACCAACCACCCCTACC  800

seq1  CTGCCTCTCAGAGCCCTACCATTACTCTCTGAAGAGTTTCCAGAATTC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTCAGAGCCCTACCATTACTCTCTGAAGAGTTTCCAGAATTC  848