BAC Information

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BAC

Clone NameB6Ng01-097P17
Chromosome12 (Build37)
Map Location 107,691,536 - 107,823,435
singlet/doubletdoublet
Overlap geneLOC100041191, LOC100040451
Upstream geneD430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola, Vrk1, LOC100040386, LOC100040404, LOC100040420, 1700121N20Rik
Downstream geneLOC673604, LOC100040484, LOC382635, LOC100041251, LOC100040497
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097P17.bB6Ng01-097P17.g
ACCDH908205DH908206
length1,1721,165
definitionDH908205|Mus musculus domesticus DNA, BAC clone: B6Ng01-097P17, 5' end.DH908206|Mus musculus domesticus DNA, BAC clone: B6Ng01-097P17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,822,293 - 107,823,435)(107,691,536 - 107,692,674)
sequence
gaattctctgtctcagtttcaccaccagaaacaagcaagaccctcacatc
ttcctggtcttacgctcctctgacttcagggagctctagagaggtcttct
tgtcctctcatcttagactttcaccacccaataccggccaactacccttg
tgatggttgaccactggtttgcagagtcctgccctcaccctgctggaagg
gaacggaacggtggacacagcaaggagacatctcattcctgcccctgaag
ctgactggcagctgggtctctccagcaggtagtaaaccgtctccctagaa
ctgacatctggaagtagggtagataaatggctttctctggggtacctatt
tatctgattgaagcaaagcagggttggctacaggatttggctctgtgttg
tgagatagcggcggcctttgatgggaagtaaaagccacatcaattggctc
ttttgactgcatctgaatacttaggcttaatattcataccttaaagtttg
tagactggacagagcatcgccgcaggcttcagaagagttttctttttaat
ataaaatgaagactattttatttcctagtgaacaggtgagcgtgtgatgt
ggtatgcacacactggtaagaaggagtcatggagagcacacatctagaat
tttccagaagccataaagtttggctcagttcctaatgtagaggacagagg
catggatcaggaagcaaggaagggcccaatgaaatctttagactctttag
aatcagaaggaagagaagttgtatggttggccaaatgatattaaacatct
aatatccctgtctgagtgctaaagtagactgagcaggatcccagattttc
attgctccatccccagaaactcaggagttttgtggctcagagaaggcttt
ggatggcataactgagtgtctctgaaaccccatcctgtcttcccctcacc
tggctattggagggcgaagctgaagagcagccttgttcccctgccatgcc
tggtgccttggaggatggaaatcccaggagcccaacctgggaattcttct
gttcaccttgtccacggctggccaaatggtcttcaaccataaggaggcca
ggaaaaggttgggaatcaagctggcaaatgtggcttggtatattttccca
ggaaggaaacacaattaacccc
gaattccttcggcaaagtgattaacggcaggggtaagaatcatcgccaca
gcgaacactgttgttcccccagacacatcctcaaattgatgttttcgtct
cattgtttttgtatttgttttttttaaccttatctaaagattttttttta
acgagaatgatttaacaaaaggcgaactctaaagcactttctcacggaac
gtcgatgtgacacggcaagtgccaacaagagggcaagatctgtctcgggg
aagtcttgaaacctctaagtggaatttgcataaaatagttctggtattat
catcccccattcttcccctgacagatatgtcaaggcctcgaaacctaaaa
gaacaattatgtcattgtacctctcagaggactcgaggggtgtgcctttg
gtgggaaaagtgctattaggccttgaaagcagctcaaaggcgacccaagg
gactctttagctcgtcattttataaagaatgccttggctttaagtgtctt
aaagtacgtttattcaaggcgcactttgagctctgaaaaaacaaccccgc
taataattaatggctgtacatctttttaacgtctgcattagctataaata
aagactgtagatgaagtcaccgttgattaagctcatcggtgacatgtgat
ggttccccatcttcatcagatgtaacaaatcgctaccaagcttttttttt
tttcttaaccattttttttaaaaattaatggatgttgcagaacccaccac
cgctgccaatgatggaccccatcagttcatctcagtgtgcacgggccacc
ttagctaaccgagcatcagagccgaaccttaaagaaagccccctttgcag
gtgcgtgtggtgagctggggcagtaaccccactttattttcttctgaagc
ctgcctgcaaggtgagtcccctggatccttggaagggctttcactgaaaa
aaaaaaaaaagcagtactgacttttaccttatgtgacaactttgagattc
aagaacaggaggctgtgagccacaaaatgtcccaggttccataggatggt
gccagttattaagatggataagctaaggagtacttgtgaaattcaatatt
tctaacgcttattagggggtccagaaggattttagattctgtaaccgact
tggtaagtgaaattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_107822293_107823435
seq2: B6Ng01-097P17.b_50_1221 (reverse)

seq1  GGGGGTAATTGTG-TTCCT--CTTGGAAAATA---CCAGCC-CATTTG-C  42
      |||| |||||||| |||||  || ||||||||   | |||| |||||| |
seq2  GGGGTTAATTGTGTTTCCTTCCTGGGAAAATATACCAAGCCACATTTGCC  50

seq1  AGGCTGAT--CCAACCTCT--CTGGCCTCCTAAT-GTAGAAGA-CATTTG  86
      ||  ||||  ||||||| |  |||||||||| || || ||||| ||||||
seq2  AGCTTGATTCCCAACCTTTTCCTGGCCTCCTTATGGTTGAAGACCATTTG  100

seq1  G-CAGCCGT-GACAA-GTG-ACAGAAGATTTCCC-GGGTGGGCTCCTGGG  131
      | ||||||| ||||| ||| |||||||| ||||| || ||||||||||||
seq2  GCCAGCCGTGGACAAGGTGAACAGAAGAATTCCCAGGTTGGGCTCCTGGG  150

seq1  ATTT-CAT-CTCCAAGGCA-CAGGCAT-GCAGGGG-ACCAGGCTGCTCTT  176
      |||| ||| |||||||||| ||||||| ||||||| || |||||||||||
seq2  ATTTCCATCCTCCAAGGCACCAGGCATGGCAGGGGAACAAGGCTGCTCTT  200

seq1  CAGCTTCGCCCTCC-ATAGCCAGGTGAGGGG-AGACAGGATGGGGTTTCA  224
      |||||||||||||| |||||||||||||||| ||||||||||||||||||
seq2  CAGCTTCGCCCTCCAATAGCCAGGTGAGGGGAAGACAGGATGGGGTTTCA  250

seq1  GAGACACTCAG-TATGCCATCCAAAGCCTTCTCTGAGCCAC-AAACTCCT  272
      ||||||||||| ||||||||||||||||||||||||||||| ||||||||
seq2  GAGACACTCAGTTATGCCATCCAAAGCCTTCTCTGAGCCACAAAACTCCT  300

seq1  GAGTTTCTGGGGATGGAGCCATGAAAATCTGGGATCCTGCTCAGTCTACT  322
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAGTTTCTGGGGATGGAGCAATGAAAATCTGGGATCCTGCTCAGTCTACT  350

seq1  TTAGCACTCAGACA-GGATATTAGATGTTTAATATCATTTGGCC-ACCAT  370
      |||||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  TTAGCACTCAGACAGGGATATTAGATGTTTAATATCATTTGGCCAACCAT  400

seq1  ACAACTTCTCTTCCTTCTGATTCTAAAGAGTCTAAAGATTTCATTGGGCC  420
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTTCTCTTCCTTCTGATTCTAAAGAGTCTAAAGATTTCATTGGGCC  450

seq1  CTTCCTTGCTTCCTGATCCATGCCTCTGTCCTCTACATTAGGAACTGAGC  470
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGCTTCCTGATCCATGCCTCTGTCCTCTACATTAGGAACTGAGC  500

seq1  CAAACTTTATGGCTTCTGGAAAATTCTAGATGTGTGCTCTCCATGACTCC  520
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTTATGGCTTCTGGAAAATTCTAGATGTGTGCTCTCCATGACTCC  550

seq1  TTCTTACCAGTGTGTGCATACCACATCACACGCTCACCTGTTCACTAGGA  570
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTACCAGTGTGTGCATACCACATCACACGCTCACCTGTTCACTAGGA  600

seq1  AATAAAATAGTCTTCATTTTATATTAAAAAGAAAACTCTTCTGAAGCCTG  620
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAATAGTCTTCATTTTATATTAAAAAGAAAACTCTTCTGAAGCCTG  650

seq1  CGGCGATGCTCTGTCCAGTCTACAAACTTTAAGGTATGAATATTAAGCCT  670
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCGATGCTCTGTCCAGTCTACAAACTTTAAGGTATGAATATTAAGCCT  700

seq1  AAGTATTCAGATGCAGTCAAAAGAGCCAATTGATGTGGCTTTTACTTCCC  720
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTCAGATGCAGTCAAAAGAGCCAATTGATGTGGCTTTTACTTCCC  750

seq1  ATCAAAGGCCGCCGCTATCTCACAACACAGAGCCAAATCCTGTAGCCAAC  770
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAAGGCCGCCGCTATCTCACAACACAGAGCCAAATCCTGTAGCCAAC  800

seq1  CCTGCTTTGCTTCAATCAGATAAATAGGTACCCCAGAGAAAGCCATTTAT  820
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTTTGCTTCAATCAGATAAATAGGTACCCCAGAGAAAGCCATTTAT  850

seq1  CTACCCTACTTCCAGATGTCAGTTCTAGGGAGACGGTTTACTACCTGCTG  870
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCCTACTTCCAGATGTCAGTTCTAGGGAGACGGTTTACTACCTGCTG  900

seq1  GAGAGACCCAGCTGCCAGTCAGCTTCAGGGGCAGGAATGAGATGTCTCCT  920
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACCCAGCTGCCAGTCAGCTTCAGGGGCAGGAATGAGATGTCTCCT  950

seq1  TGCTGTGTCCACCGTTCCGTTCCCTTCCAGCAGGGTGAGGGCAGGACTCT  970
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGTCCACCGTTCCGTTCCCTTCCAGCAGGGTGAGGGCAGGACTCT  1000

seq1  GCAAACCAGTGGTCAACCATCACAAGGGTAGTTGGCCGGTATTGGGTGGT  1020
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACCAGTGGTCAACCATCACAAGGGTAGTTGGCCGGTATTGGGTGGT  1050

seq1  GAAAGTCTAAGATGAGAGGACAAGAAGACCTCTCTAGAGCTCCCTGAAGT  1070
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTCTAAGATGAGAGGACAAGAAGACCTCTCTAGAGCTCCCTGAAGT  1100

seq1  CAGAGGAGCGTAAGACCAGGAAGATGTGAGGGTCTTGCTAGATGTCTGGT  1120
      ||||||||||||||||||||||||||||||||||||||| | | ||||||
seq2  CAGAGGAGCGTAAGACCAGGAAGATGTGAGGGTCTTGCTTG-TTTCTGGT  1149

seq1  GGTGAAACTGAGACAGAGAATTC  1143
      |||||||||||||||||||||||
seq2  GGTGAAACTGAGACAGAGAATTC  1172

seq1: chr12_107691536_107692674
seq2: B6Ng01-097P17.g_70_1234

seq1  GAATTCCTTCGGCAAAGTGATTAACGGCAGGGGTAAGAATCATCGCCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTCGGCAAAGTGATTAACGGCAGGGGTAAGAATCATCGCCACA  50

seq1  GCGAACACTGTTGTTCCCCCAGACACATCCTCAAATTGATGTTTTCGTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAACACTGTTGTTCCCCCAGACACATCCTCAAATTGATGTTTTCGTCT  100

seq1  CATTGTTTTTGTATTTGTTTTTTTTAACCTTATCTAAAGATTTTTTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTTTGTATTTGTTTTTTTTAACCTTATCTAAAGATTTTTTTTTA  150

seq1  ACGAGAATGATTTAACAAAAGGCGAACTCTAAAGCACTTTCTCACGGAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGAATGATTTAACAAAAGGCGAACTCTAAAGCACTTTCTCACGGAAC  200

seq1  GTCGATGTGACACGGCAAGTGCCAACAAGAGGGCAAGATCTGTCTCGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGATGTGACACGGCAAGTGCCAACAAGAGGGCAAGATCTGTCTCGGGG  250

seq1  AAGTCTTGAAACCTCTAAGTGGAATTTGCATAAAATAGTTCTGGTATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTGAAACCTCTAAGTGGAATTTGCATAAAATAGTTCTGGTATTAT  300

seq1  CATCCCCCATTCTTCCCCTGACAGATATGTCAAGGCCTCGAAACCTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCCATTCTTCCCCTGACAGATATGTCAAGGCCTCGAAACCTAAAA  350

seq1  GAACAATTATGTCATTGTACCTCTCAGAGGACTCGAGGGGTGTGCCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAATTATGTCATTGTACCTCTCAGAGGACTCGAGGGGTGTGCCTTTG  400

seq1  GTGGGAAAAGTGCTATTAGGCCTTGAAAGCAGCTCAAAGGCGACCCAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAAAGTGCTATTAGGCCTTGAAAGCAGCTCAAAGGCGACCCAAGG  450

seq1  GACTCTTTAGCTCGTCATTTTATAAAGAATGCCTTGGCTTTAAGTGTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTTAGCTCGTCATTTTATAAAGAATGCCTTGGCTTTAAGTGTCTT  500

seq1  AAAGTACGTTTATTCAAGGCGCACTTTGAGCTCTGAAAAAACAACCCCGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTACGTTTATTCAAGGCGCACTTTGAGCTCTGAAAAAACAACCCCGC  550

seq1  TAATAATTAATGGCTGTACATCTTTTTAACGTCTGCATTAGCTATAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATTAATGGCTGTACATCTTTTTAACGTCTGCATTAGCTATAAATA  600

seq1  AAGACTGTAGATGAAGTCACCGTTGATTAAGCTCATCGGTGACATGTGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGTAGATGAAGTCACCGTTGATTAAGCTCATCGGTGACATGTGAT  650

seq1  GGTTCCCCATCTTCATCAGATGTAACAAATCGCTACCAAGC-TTTTTTTT  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGTTCCCCATCTTCATCAGATGTAACAAATCGCTACCAAGCTTTTTTTTT  700

seq1  TTTCTTAACCA-TTTTTTTAAAAATTAATGGATGTTGCAGAACCCACCAC  748
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAACCATTTTTTTTAAAAATTAATGGATGTTGCAGAACCCACCAC  750

seq1  CGCTGCCAATGATGGACCCCATCAGTTCATCTCAGTGTGCACGGGCCACC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCCAATGATGGACCCCATCAGTTCATCTCAGTGTGCACGGGCCACC  800

seq1  TTAGCTAACCGAGCATCAGAGCCGAACC-TAAAG-AAGCCCCC-TTGCAG  845
      |||||||||||||||||||||||||||| ||||| |||||||| ||||||
seq2  TTAGCTAACCGAGCATCAGAGCCGAACCTTAAAGAAAGCCCCCTTTGCAG  850

seq1  GTGCGTGTGGTGAGCT-GGGCAGTAACCCCACTTTAATTTCTTCTGAAGC  894
      |||||||||||||||| ||||||||||||||||||| |||||||||||||
seq2  GTGCGTGTGGTGAGCTGGGGCAGTAACCCCACTTTATTTTCTTCTGAAGC  900

seq1  CTGCCTGCAAGGTGAGT-CCCTGGATCCTTGGAAGGGC-TTCACTG-AAA  941
      ||||||||||||||||| |||||||||||||||||||| ||||||| |||
seq2  CTGCCTGCAAGGTGAGTCCCCTGGATCCTTGGAAGGGCTTTCACTGAAAA  950

seq1  AAAAAAAAAAGCAGTACTGAC-TCTACTTTATGTGACAACTTTGAGATTC  990
      ||||||||||||||||||||| | ||| ||||||||||||||||||||||
seq2  AAAAAAAAAAGCAGTACTGACTTTTACCTTATGTGACAACTTTGAGATTC  1000

seq1  AAG-ACA-GAGGCTGTGAGGCACAAAATGT-CCAAGTTCCATAGGATGGT  1037
      ||| ||| ||||||||||| |||||||||| ||| |||||||||||||||
seq2  AAGAACAGGAGGCTGTGAGCCACAAAATGTCCCAGGTTCCATAGGATGGT  1050

seq1  G-CAG-TATCAAGATGAATAAGCTAA-GAG-ACTTG---AAATCAA-AAT  1079
      | ||| ||| |||||| ||||||||| ||| |||||   || |||| | |
seq2  GCCAGTTATTAAGATGGATAAGCTAAGGAGTACTTGTGAAATTCAATATT  1100

seq1  TCTAACAGCTTATTAGGGG--TCAG-AGGAATTTAGATTCTG--AACGAC  1124
      |||||| ||||||||||||   ||| |||| |||||||||||  | ||||
seq2  TCTAAC-GCTTATTAGGGGGTCCAGAAGGATTTTAGATTCTGTAACCGAC  1149

seq1  -TGGGAAGTGAAATTC  1139
       ||| |||||||||||
seq2  TTGGTAAGTGAAATTC  1165