BAC Information

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BAC

Clone NameB6Ng01-098A02
Chromosome12 (Build37)
Map Location 113,998,204 - 114,145,727
singlet/doubletdoublet
Overlap genePld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132
Upstream geneKlc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640
Downstream geneJag2, Nudt14, Brf1, Btbd6, Pacs2, Tex22, Mta1, Crip2, Crip1, 4930427A07Rik, LOC676349, Tmem121, Igh, Igh-2, Gm900, Igh-1b, Igh-3, Ighg1, AI324046, LOC668370, LOC668375, EG382645, Igh-5, Igh-6, Ighj4, Ighj3, Ighj2, Ighj1, Ighd4-1, Ighd3-2, Ighd5-6, Ighd2-8, Ighd5-5, Ighd2-7, Ighd5-8, Ighd5-4, Ighd2-6, Ighd5-7, Ighd5-3, Ighd2-5, Ighd5-2, Ighd2-4, Ighd6-2, Ighd2-3, Ighd6-1, Ighd1-1, 4930523C11Rik, Ighd3-1, Ighd5-1, Adam6, Ighv5-1, Ighv2-1, Ighv5-2, Ighv2-2, Ighv5-3, Ighv5-4, Ighv6-1, Ighv2-3, Ighv5-5, Ighv5-6, Ankrd12-like, Ighv5-7, EG668389, Ighv5-8, Ighv5-9, Ighv5-10, Ighv2-5, Ighv5-11, Ighv5-12, Ighv2-6, Ighv5-9-1, EG628098, Ighv2-9-1, Ighv5-13, Ighv2-6-8, EG629785, Ighv2-7, LOC668405, Ighv5-15, Ighv5-16, Ighv5-17, Ighv5-18, Ighv2-8, Ighv2-9, Ighv5-19, Ighv7-1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098A02.bB6Ng01-098A02.g
ACCDH908223DH908224
length1,1671,174
definitionDH908223|Mus musculus domesticus DNA, BAC clone: B6Ng01-098A02, 5' end.DH908224|Mus musculus domesticus DNA, BAC clone: B6Ng01-098A02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,144,574 - 114,145,727)(113,998,204 - 113,999,406)
sequence
gaattcacagtctaagagaccccaagtttgagagaaggaagcccaaggat
gccacagacttctagccagtgccctcttgtcttttttttttttttttttt
ttttggtttttcaagacagggtttctctgtgtagatctggctgtcctaga
actcactctataccaggctggcctcgaactcaagaaatccacctgcctct
gcctcccaagagctgggattaaaggcatgcgccaccaccgcccggccctc
ttgtctttatatctaaagtagaaactataaggactaagcagtggtggcct
cggggctgggcgttgggagccaatcctggagccaactgccagcagtgcac
agggtgtttgccctctctggcagaggctggcagacggtacatagcaaggc
cagcatccacagcttaggagagcagaaagaatgcttggctcttgagagga
gggggactcactatacttcttgctgggtaaaaagctggtctggttcctgc
cagggttgtttctggagatgccttgtgctgtttctctaatactgcagtgt
gtgatgagtcttcccaccaggctcttcagagaagtgctagaccagcagca
acactcgcaggcactgggcagtcccgtcgcaagcctgccgaggaggcgtg
gtcttcatcctgactcggtaataagatttgaaagttacgttcccgccatt
atgctggctaaaaaacaccccctaggcttcaagtttcttcctaattgata
atttgaggccctcaagggcatgatgggaatgaatatcaccctcccctgtt
ctagaatgctacccactggtctcttaaatgactttatatggtccttgagc
agactacagccaagacccctcagagtgacgggaagcccggcctgtgagca
gcagccttgaagaacggactgcagagaaggcctgcatgccgacgttagga
ttctcagtccaccatcaatagagcgaggctgctcacccgcgcccaaagca
gaatgcctcctcagaagcactggcagccagagaagccgcagaaaggaaga
tatatgttggaccgcaaatgaaaacagtggcaactgaagaatgaccttca
ggaagaatggccagcacttggtaagaggaagcccattgtaccggcgcttt
gctgcgaaatcacggga
gaattccagggtttggaggctaagacttcctgtgactgtgtcactgataa
cttctccagaaactggttgcagggtatggttggtgggtcagtcagttttt
cttcactatgacgcagacctgaggtaaactgtttgaaggatgaaggactt
attttggcttgcagctttagaggttttaaccaatgtcagctgttgccatt
cccatggaactagagtgtggccaggcatagtaacagcagcaaggcagagg
gaagcagcttgccctataacagacaggaagcagagagagatgaagaaccc
aggcataagacatggcgagccaagtcctgccccagaaacctacatcctcc
aatcaggccccaccttccacagtttccacctcctcccatcatggctatca
ttgcacaatttgttaattagctcatgatgcaacttcaataaaattaccag
tcttcaatatatgagcccctggagaagttaagtcagtttgaggctctctt
acttgagactttggtgtttgcagtcaaacttaattccaacatttggttta
tgactgagggaccctctctaggagcaagcagggtagatttttctccagag
gtgaaagttctcagctccgccccctagagacccgatctgtcttgacgtgg
gggtggggtgctcagaacaaagaggaagtgaatggaagggggaagcagca
ggccagagaggaggcaggtgcctgcctgcacaggcaaagcctgcagacag
tggctggaaccaggatggacaagaagaaagagcacccagaggtaagtggt
agccaggctagagccagacagagggcctcaagagggtgtctgtctacctc
ccacagtcccctcctcccagcaccctaggtcccacaagccacccagattg
gctggcagatgtccactccttgcttgatctatggatccagggtcaatggg
gtatcaaagtctccagccactgggcagcttgtcctatcccacgcctcggt
cacagtttagccacaggcagaccccagatctgagctcaggggctctaagc
atcccccagctcaccctcttctgatatggcagtacaaggagttaccctaa
gccgactgtcctacacccgaggatcgagaccaaggactagattgacaggt
ctgcgatgctagaaggcgcccttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_114144574_114145727
seq2: B6Ng01-098A02.b_41_1207 (reverse)

seq1  TCCCGTGCTTCTGCAGC-AAGCGCCGTACCAACTGGGCTCTCTCTCTTCA  49
      ||||||| ||  ||||| ||||||||   ||| ||||||  ||||   ||
seq2  TCCCGTGATTTCGCAGCAAAGCGCCGGTACAA-TGGGCTTCCTCTTACCA  49

seq1  AGTGCTGGCCAT--CTCCTGAGGGTCA-TCTTCTAGTTG-CACTG-TTTC  94
      ||||||||||||   |||||| ||||| ||||| ||||| ||||| ||||
seq2  AGTGCTGGCCATTCTTCCTGAAGGTCATTCTTC-AGTTGCCACTGTTTTC  98

seq1  ATTTGCGGTC---CACATATCTTCCTTTCTGCGGCTTCTCTGGCTGCCAG  141
      ||||||||||   || ||||||||||||||||||||||||||||||||||
seq2  ATTTGCGGTCCAACATATATCTTCCTTTCTGCGGCTTCTCTGGCTGCCAG  148

seq1  TGCTTCTGAGGAGGCA-TCTGCTTTGGGCGC-GGTGAGCAGCCTCGCTCT  189
      |||||||||||||||| |||||||||||||| ||||||||||||||||||
seq2  TGCTTCTGAGGAGGCATTCTGCTTTGGGCGCGGGTGAGCAGCCTCGCTCT  198

seq1  ATGGATGGT-GACTGAGAATCCTAACGTCTGCATGCAGGCC-TCTCTGCA  237
      || |||||| ||||||||||||||||||| ||||||||||| ||||||||
seq2  ATTGATGGTGGACTGAGAATCCTAACGTCGGCATGCAGGCCTTCTCTGCA  248

seq1  GTCCGTTCTTC-AGGCTGCTGCTCACAGGCCGGGCTTCCCGTCACTCTGA  286
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTCCGTTCTTCAAGGCTGCTGCTCACAGGCCGGGCTTCCCGTCACTCTGA  298

seq1  -GGGTCTTGGCTGTAGTCTGCTCAAGGACCATATAAAGTCATTTAAGAGA  335
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCTTGGCTGTAGTCTGCTCAAGGACCATATAAAGTCATTTAAGAGA  348

seq1  CCAGTGGGTAGCATTCTAGAACAGGGGAGGGTGATATTCATTCCCATCAT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGGTAGCATTCTAGAACAGGGGAGGGTGATATTCATTCCCATCAT  398

seq1  GCCCTTGAGGGCCTCAAATTATCAATTAGGAAGAAACTTGAAGCCTAGGG  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGAGGGCCTCAAATTATCAATTAGGAAGAAACTTGAAGCCTAGGG  448

seq1  GGTGTTTTTTAGCCAGCATAATGGCGGGAACGTAACTTTCAAATCTTATT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTTTTTAGCCAGCATAATGGCGGGAACGTAACTTTCAAATCTTATT  498

seq1  ACCGAGTCAGGATGAAGACCACGCCTCCTCGGCAGGCTTGCGACGGGACT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGTCAGGATGAAGACCACGCCTCCTCGGCAGGCTTGCGACGGGACT  548

seq1  GCCCAGTGCCTGCGAGTGTTGCTGCTGGTCTAGCACTTCTCTGAAGAGCC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGTGCCTGCGAGTGTTGCTGCTGGTCTAGCACTTCTCTGAAGAGCC  598

seq1  TGGTGGGAAGACTCATCACACACTGCAGTATTAGAGAAACAGCACAAGGC  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGGAAGACTCATCACACACTGCAGTATTAGAGAAACAGCACAAGGC  648

seq1  ATCTCCAGAAACAACCCTGGCAGGAACCAGACCAGCTTTTTACCCAGCAA  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCAGAAACAACCCTGGCAGGAACCAGACCAGCTTTTTACCCAGCAA  698

seq1  GAAGTATAGTGAGTCCCCCTCCTCTCAAGAGCCAAGCATTCTTTCTGCTC  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATAGTGAGTCCCCCTCCTCTCAAGAGCCAAGCATTCTTTCTGCTC  748

seq1  TCCTAAGCTGTGGATGCTGGCCTTGCTATGTACCGTCTGCCAGCCTCTGC  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGCTGTGGATGCTGGCCTTGCTATGTACCGTCTGCCAGCCTCTGC  798

seq1  CAGAGAGGGCAAACACCCTGTGCACTGCTGGCAGTTGGCTCCAGGATTGG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGGGCAAACACCCTGTGCACTGCTGGCAGTTGGCTCCAGGATTGG  848

seq1  CTCCCAACGCCCAGCCCCGAGGCCACCACTGCTTAGTCCTTATAGTTTCT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAACGCCCAGCCCCGAGGCCACCACTGCTTAGTCCTTATAGTTTCT  898

seq1  ACTTTAGATATAAAGACAAGAGGGCCGGGCGGTGGTGGCGCATGCCTTTA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAGATATAAAGACAAGAGGGCCGGGCGGTGGTGGCGCATGCCTTTA  948

seq1  ATCCCAGCTCTTGGGAGGCAGAGGCAGGTGGATTTCTTGAGTTCGAGGCC  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCTCTTGGGAGGCAGAGGCAGGTGGATTTCTTGAGTTCGAGGCC  998

seq1  AGCCTGGTATAGAGTGAGTTCTAGGACAGCCAGATCTACACAGAGAAACC  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGTATAGAGTGAGTTCTAGGACAGCCAGATCTACACAGAGAAACC  1048

seq1  CTGTCTTGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAGACAAGAGGGCA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTGAAAAACCAAAAAAAAAAAAAAAAAAAAAAAGACAAGAGGGCA  1098

seq1  CTGGCTAGAAGTCTGTGGCATCCTTGGGCTTCCTTCTCTCAAACTTGGGG  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTAGAAGTCTGTGGCATCCTTGGGCTTCCTTCTCTCAAACTTGGGG  1148

seq1  TCTCTTAGACTGTGAATTC  1154
      |||||||||||||||||||
seq2  TCTCTTAGACTGTGAATTC  1167

seq1: chr12_113998204_113999406
seq2: B6Ng01-098A02.g_67_1240

seq1  GAATTCCAGGGTTTGGAGGCTAAGACTTCCTGTGACTGTGTCACTGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGTTTGGAGGCTAAGACTTCCTGTGACTGTGTCACTGATAA  50

seq1  CTTCTCCAGAAACTGGTTGCAGGGTATGGTTGGTGGGTCAGTCAGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCAGAAACTGGTTGCAGGGTATGGTTGGTGGGTCAGTCAGTTTTT  100

seq1  CTTCACTATGACGCAGACCTGAGGTAAACTGTTTGAAGGATGAAGGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTATGACGCAGACCTGAGGTAAACTGTTTGAAGGATGAAGGACTT  150

seq1  ATTTTGGCTTGCAGCTTTAGAGGTTTTAACCAATGTCAGCTGTTGCCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGGCTTGCAGCTTTAGAGGTTTTAACCAATGTCAGCTGTTGCCATT  200

seq1  CCCATGGAACTAGAGTGTGGCCAGGCATAGTAACAGCAGCAAGGCAGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGGAACTAGAGTGTGGCCAGGCATAGTAACAGCAGCAAGGCAGAGG  250

seq1  GAAGCAGCTTGCCCTATAACAGACAGGAAGCAGAGAGAGATGAAGAACCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGCTTGCCCTATAACAGACAGGAAGCAGAGAGAGATGAAGAACCC  300

seq1  AGGCATAAGACATGGCGAGCCAAGTCCTGCCCCAGAAACCTACATCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAAGACATGGCGAGCCAAGTCCTGCCCCAGAAACCTACATCCTCC  350

seq1  AATCAGGCCCCACCTTCCACAGTTTCCACCTCCTCCCATCATGGCTATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGGCCCCACCTTCCACAGTTTCCACCTCCTCCCATCATGGCTATCA  400

seq1  TTGCACAATTTGTTAATTAGCTCATGATGCAACTTCAATAAAATTACCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAATTTGTTAATTAGCTCATGATGCAACTTCAATAAAATTACCAG  450

seq1  TCTTCAATATATGAGCCCCTGGAGAAGTTAAGTCAGTTTGAGGCTCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAATATATGAGCCCCTGGAGAAGTTAAGTCAGTTTGAGGCTCTCTT  500

seq1  ACTTGAGACTTTGGTGTTTGCAGTCAAACTTAATTCCAACATTTGGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGACTTTGGTGTTTGCAGTCAAACTTAATTCCAACATTTGGTTTA  550

seq1  TGACTGAGGGACCCTCTCTAGGAGCAAGCAGGGTAGATTTTTCTCCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAGGGACCCTCTCTAGGAGCAAGCAGGGTAGATTTTTCTCCAGAG  600

seq1  GTGAAAGTTCTCAGCTCCGCCCCCTAGAGACCCGATCTGTCTTGACGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAGTTCTCAGCTCCGCCCCCTAGAGACCCGATCTGTCTTGACGTGG  650

seq1  GGGTGGGGTGCTCAGAACAAAGAGGAAGTGAATGGAAGGGGGAAGCAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGGTGCTCAGAACAAAGAGGAAGTGAATGGAAGGGGGAAGCAGCA  700

seq1  GGCCAGAGAGGAGGCAGGTGCCTGCCTGCACAGGCAAAGCCTGCAGACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGAGAGGAGGCAGGTGCCTGCCTGCACAGGCAAAGCCTGCAGACAG  750

seq1  TGGCTGGAACCAGGATGGACAAGAAGAAAGAGCACCCAGAGGTAAGTGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGAACCAGGATGGACAAGAAGAAAGAGCACCCAGAGGTAAGTGGT  800

seq1  AGCCAGGCTAGAGCCAGACAGAGGGCCTCAAGAGGGGTGTCTGTCTACCT  850
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGCCAGGCTAGAGCCAGACAGAGGGCCTCAAGA-GGGTGTCTGTCTACCT  849

seq1  CCCACAGTCCCCTCCTCCCAGCACCCTAGGTCCCACAAGCCACCCAGATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGTCCCCTCCTCCCAGCACCCTAGGTCCCACAAGCCACCCAGATT  899

seq1  GGCTGGCAGATGTCCACTCCTTGCTTGATCTATGGATCCAGGGTCAAT-G  949
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGCTGGCAGATGTCCACTCCTTGCTTGATCTATGGATCCAGGGTCAATGG  949

seq1  GGTATCAAAGTCTCCAGCCACTGGGCAGCTTTGTCCTATCCCACGCCTCG  999
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GGTATCAAAGTCTCCAGCCACTGGGCAGC-TTGTCCTATCCCACGCCTCG  998

seq1  GGTCCACAGTTTAGCCCACAGGGCAGGAACCCCAGAACCTTGAGGCTCAG  1049
      |   |||||||||| ||||| |||||  |||||||| |  ||| ||||| 
seq2  G--TCACAGTTTAG-CCACA-GGCAG--ACCCCAGATC--TGA-GCTCA-  1038

seq1  GGGGCTCTAAAGCCCATCCCCCAGCTCACCCCTCTCCTGATATGCCAGTA  1099
      ||||||||||    |||||||||||||| |||||| |||||||| |||||
seq2  GGGGCTCTAA---GCATCCCCCAGCTCA-CCCTCTTCTGATATGGCAGTA  1084

seq1  CCAGGGAGTGTTTCCCTCTAGCCAGACAGTCCCAC-CCCAAGGATTCGAA  1148
      | ||   | ||| ||||  |||| ||| |||| || ||| |||| |||  
seq2  CAAG---GAGTTACCCT-AAGCC-GACTGTCCTACACCCGAGGA-TCG--  1126

seq1  AGACCCACAGGGACCAAGGATGTGACAGGTCTGCAGATGCTTAGAGCCGC  1198
      ||||   || |||| |  ||| |||||||||||| ||||||   || |||
seq2  AGAC---CAAGGACTA--GAT-TGACAGGTCTGC-GATGCTAGAAGGCGC  1169

seq1  CCTTC  1203
      |||||
seq2  CCTTC  1174