BAC Information

Click to search

BAC

Clone NameB6Ng01-099L16
Chromosome12 (Build37)
Map Location 90,674,518 - 90,790,875
singlet/doubletdoublet
Overlap geneNrxn3
Upstream geneAdck1, LOC100039261, EG666915
Downstream geneLOC100039498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099L16.bB6Ng01-099L16.g
ACCDH909442DH909443
length1,1491,023
definitionDH909442|Mus musculus domesticus DNA, BAC clone: B6Ng01-099L16, 5' end.DH909443|Mus musculus domesticus DNA, BAC clone: B6Ng01-099L16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,789,716 - 90,790,875)(90,674,518 - 90,675,534)
sequence
gaattcttacagccaactggaaattgcagttaaagggaagaaggagtaga
aagcgagaaacctaaaatgagagtacacatccctcaagcctttgctacat
aaaatttgggggtccagaattctataatatttgcttaaggtcaaaatttt
cttatactgcaggggagattatctatacactccaagggtcaaaactgtgt
tcccataaagatgaaataatgtacatatttcaaagggatgcaggaactaa
tagtattgaatgcctcaagcactctaggtgaacaggtatttgaaggaaag
gtcctctgggctccctggaatttcttcatgataattgcctagagccgggc
aacagtagcagaacttagttcacatcagggagaaaaaaatgaacttggaa
tgaacttttctcagccatacacagtaaaggatattaaaattatatttcaa
tcagagaattcacaattcattttactagaaatcatacagcaaacattatc
tgatacctctaagtccaacacgtagctggaatttatgagctgtccgagta
acacaaaaaggtgtttagtgcctatatgtagatttctttaacgtataaga
tctattaattataaatccaagcatatataaaataaaaaaggaacaataat
cagatcttcaagtttataaatggaatatatttattacattttagccatcc
taccaatcctttgattattagactttactatcagcctttgggtggcttga
tattttttttaacttgagactagacctaaagcttacagtgtcaaaatcct
agtgtcaaaatgccctttagcctgtaggctcctcctattgcttttcctgg
cttcactcaatgttctttgaaactttcattcaatccactctttcacaaac
tgagccaggctttggctctttgccctgagcagatgagtgatgtttactct
ccacacagcttattctatgttcagctgccgctcacacactgccagcaatt
ctctaagccaggtcttgatcaactcataccctgtgcaaatcatcccttag
tactttgatggttaattttgtcactgatacatctagaatcacggccaaaa
gagtcctaatgaatgattgccgggctagattccttagcatatcctctgg
gaattccagaccagtgactcagcaatctgtccagggacctctaaagtgtt
aaatattgcttattcaaagaatgaatccatagtttgtataagcttttcta
gatttctgacacccacaaaagttacagtccatttgggacacacacacaca
caaatacctctccccccccccaacacacacacttctatcatgtgatctct
cataaaagtatacaaacacattattctttgattaaatgtagatttcctga
aaccaaagttttagccatatgttcctgagaaacttttcatagagatggca
gactcagactatgagtcaacattttttttaaggccccctcgatgtcctta
aaagaagaaaggggtagcttctagggggagtggaagatttaatctttttg
ctagttcaggtcccttggaggcaaaaatggtgttaatatagatcgcagaa
ttgtttcatatctgcatattatcaagggaactgaaaacaggttcttactg
ctctggccaggagctgtttagtttgggtgtgggtatgtgaacctgcagag
cagagccagacactggattctaccccccccccccccacacacacacacat
acactgcttcctactccctgaatgagatggcttcttatccctctatacag
ctgataacagctggatattgtccagtgctcctctcttggtgtttcaagag
tgacaaactagggttcatgtcctcaatggctttctaaaaatagacttcta
gaaaggaaattatgcactgggtgttttcagaaagagcattttctctgttt
ttcaactgctaacattgtttttcactagactgtatatggggtgggtcttt
agggtttgacaatcttagggaaattaagtaagcaaaggattatgattcat
gtcatggtaggtgtaggagacttatgtcttaacagaagagacttctttag
gattctaaacattaaaggaatctattctacctgaaatcaaagtatgcatt
ctgaaaacccaacattgaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_90789716_90790875
seq2: B6Ng01-099L16.b_49_1197 (reverse)

seq1  CCAGA-GATATGCCTACAGGAAATCTAGCCCAGACAATCCATCAATTAGA  49
      ||||| |||||| ||| ||| |||||||||| | |||||  ||| |  ||
seq2  CCAGAGGATATG-CTA-AGG-AATCTAGCCC-GGCAATCATTCATTAGGA  46

seq1  CTCTTTTGGCCGGTGATTCTAGATTGTATCAAGTTGACAAAATTAACCAT  99
      ||||||||||| ||||||||||| |||||||   ||||||||||||||||
seq2  CTCTTTTGGCC-GTGATTCTAGA-TGTATCA--GTGACAAAATTAACCAT  92

seq1  CACAAGTACTAAGGGATGATTTTGCACAAGGGTATGAGTTGATCAAGACC  149
      || |||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  CA-AAGTACTAAGGGATGA-TTTGCAC-AGGGTATGAGTTGATCAAGACC  139

seq1  TGGCTTAGAAGAATTGCTGGCAGTGTGTGAGCGGCAGCTGAACATAGAAT  199
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAG-AGAATTGCTGGCAGTGTGTGAGCGGCAGCTGAACATAGAAT  188

seq1  AAGCTGTGTGGAGAGTAAACATCACTCATCTGCTCAGGGCAAAGAGCCAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTGTGGAGAGTAAACATCACTCATCTGCTCAGGGCAAAGAGCCAA  238

seq1  AGCCTGGCTCAGTTTGTGAAAGAGTGGATTGAATGAAAGTTTCAAAGAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGCTCAGTTTGTGAAAGAGTGGATTGAATGAAAGTTTCAAAGAAC  288

seq1  ATTGAGTGAAGCCAGGAAAAGCAATAGGAGGAGCCTACAGGCTAAAGGGC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAGTGAAGCCAGGAAAAGCAATAGGAGGAGCCTACAGGCTAAAGGGC  338

seq1  ATTTTGACACTAGGATTTTGACACTGTAAGCTTTAGGTCTAGTCTCAAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGACACTAGGATTTTGACACTGTAAGCTTTAGGTCTAGTCTCAAGT  388

seq1  TAAAAAAAATATCAAGCCACCCAAAGGCTGATAGTAAAGTCTAATAATCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAATATCAAGCCACCCAAAGGCTGATAGTAAAGTCTAATAATCA  438

seq1  AAGGATTGGTAGGATGGCTAAAATGTAATAAATATATTCCATTTATAAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTGGTAGGATGGCTAAAATGTAATAAATATATTCCATTTATAAAC  488

seq1  TTGAAGATCTGATTATTGTTCCTTTTTTATTTTATATATGCTTGGATTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGATCTGATTATTGTTCCTTTTTTATTTTATATATGCTTGGATTTA  538

seq1  TAATTAATAGATCTTATACGTTAAAGAAATCTACATATAGGCACTAAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAATAGATCTTATACGTTAAAGAAATCTACATATAGGCACTAAACA  588

seq1  CCTTTTTGTGTTACTCGGACAGCTCATAAATTCCAGCTACGTGTTGGACT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTGTGTTACTCGGACAGCTCATAAATTCCAGCTACGTGTTGGACT  638

seq1  TAGAGGTATCAGATAATGTTTGCTGTATGATTTCTAGTAAAATGAATTGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGGTATCAGATAATGTTTGCTGTATGATTTCTAGTAAAATGAATTGT  688

seq1  GAATTCTCTGATTGAAATATAATTTTAATATCCTTTACTGTGTATGGCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGATTGAAATATAATTTTAATATCCTTTACTGTGTATGGCTG  738

seq1  AGAAAAGTTCATTCCAAGTTCATTTTTTTCTCCCTGATGTGAACTAAGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGTTCATTCCAAGTTCATTTTTTTCTCCCTGATGTGAACTAAGTT  788

seq1  CTGCTACTGTTGCCCGGCTCTAGGCAATTATCATGAAGAAATTCCAGGGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTACTGTTGCCCGGCTCTAGGCAATTATCATGAAGAAATTCCAGGGA  838

seq1  GCCCAGAGGACCTTTCCTTCAAATACCTGTTCACCTAGAGTGCTTGAGGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGAGGACCTTTCCTTCAAATACCTGTTCACCTAGAGTGCTTGAGGC  888

seq1  ATTCAATACTATTAGTTCCTGCATCCCTTTGAAATATGTACATTATTTCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAATACTATTAGTTCCTGCATCCCTTTGAAATATGTACATTATTTCA  938

seq1  TCTTTATGGGAACACAGTTTTGACCCTTGGAGTGTATAGATAATCTCCCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATGGGAACACAGTTTTGACCCTTGGAGTGTATAGATAATCTCCCC  988

seq1  TGCAGTATAAGAAAATTTTGACCTTAAGCAAATATTATAGAATTCTGGAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTATAAGAAAATTTTGACCTTAAGCAAATATTATAGAATTCTGGAC  1038

seq1  CCCCAAATTTTATGTAGCAAAGGCTTGAGGGATGTGTACTCTCATTTTAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAATTTTATGTAGCAAAGGCTTGAGGGATGTGTACTCTCATTTTAG  1088

seq1  GTTTCTCGCTTTCTACTCCTTCTTCCCTTTAACTGCAATTTCCAGTTGGC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTCGCTTTCTACTCCTTCTTCCCTTTAACTGCAATTTCCAGTTGGC  1138

seq1  TGTAAGAATTC  1160
      |||||||||||
seq2  TGTAAGAATTC  1149

seq1: chr12_90674518_90675534
seq2: B6Ng01-099L16.g_68_1090

seq1  GAATTCCAGACCAGTGACTCAGCAATCTGTCCAGGGACCTCTAAAGTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGACCAGTGACTCAGCAATCTGTCCAGGGACCTCTAAAGTGTT  50

seq1  AAATATTGCTTATTCAAAGAATGAATCCATAGTTTGTATAAGCTTTTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGCTTATTCAAAGAATGAATCCATAGTTTGTATAAGCTTTTCTA  100

seq1  GATTTCTGACACCCACAAAAGTTACAGTCCATTTGGGACACACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTGACACCCACAAAAGTTACAGTCCATTTGGGACACACACACACA  150

seq1  CAAATACCTCTCCCCCCCCCCAACACACACACTTCTATCATGTGATCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATACCTCTCCCCCCCCCCAACACACACACTTCTATCATGTGATCTCT  200

seq1  CATAAAAGTATACAAACACATTATTCTTTGATTAAATGTAGATTTCCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAAGTATACAAACACATTATTCTTTGATTAAATGTAGATTTCCTGA  250

seq1  AACCAAAGTTTTAGCCATATGTTCCTGAGAAACTTTTCATAGAGATGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAGTTTTAGCCATATGTTCCTGAGAAACTTTTCATAGAGATGGCA  300

seq1  GACTCAGACTATGAGTCAACATTTTTTTTAAGGCCCCCTCGATGTCCTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGACTATGAGTCAACATTTTTTTTAAGGCCCCCTCGATGTCCTTA  350

seq1  AAAGAAGAAAGGGGTAGCTTCTAGGGGGAGTGGAAGATTTAATCTTTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGAAAGGGGTAGCTTCTAGGGGGAGTGGAAGATTTAATCTTTTTG  400

seq1  CTAGTTCAGGTCCCTTGGAGGCAAAAATGGTGTTAATATAGATCGCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCAGGTCCCTTGGAGGCAAAAATGGTGTTAATATAGATCGCAGAA  450

seq1  TTGTTTCATATCTGCATATTATCAAGGGAACTGAAAACAGGTTCTTACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCATATCTGCATATTATCAAGGGAACTGAAAACAGGTTCTTACTG  500

seq1  CTCTGGCCAGGAGCTGTTTAGTTTGGGTGTGGGTATGTGAACCTGCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCCAGGAGCTGTTTAGTTTGGGTGTGGGTATGTGAACCTGCAGAG  550

seq1  CAGAGCCAGACACTGGATTCTACCCCCCCCCCCCCCACACACACACACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCAGACACTGGATTCTACCCCCCCCCCCCCCACACACACACACAT  600

seq1  ACACTGCTTCCTACTCCCTGAATGAGATGGCTTCTTATCCCTCTATACAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCTTCCTACTCCCTGAATGAGATGGCTTCTTATCCCTCTATACAG  650

seq1  CTGATAACAGCTGGATATTGTCCAGTGCTCCTCTCTTGGTG-TTCAAGAG  699
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTGATAACAGCTGGATATTGTCCAGTGCTCCTCTCTTGGTGTTTCAAGAG  700

seq1  TGACAAACTA-GGTTCATGTCCTCAATGGCTTTCTAAAAATAGACTTCTA  748
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TGACAAACTAGGGTTCATGTCCTCAATGGCTTTCTAAAAATAGACTTCTA  750

seq1  G-AAGGAAATTATGCACT-GGTG-TTTCAGAAAGAGCATTTTCTCTGTTT  795
      | |||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  GAAAGGAAATTATGCACTGGGTGTTTTCAGAAAGAGCATTTTCTCTGTTT  800

seq1  TTCAACTGCT-ACATTGTTTTTCACTAGACTGTATATGGGGTGGGTCTTT  844
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTGCTAACATTGTTTTTCACTAGACTGTATATGGGGTGGGTCTTT  850

seq1  AGGGTTTGACAATCTTAGGGAAATT-AGTAAGCAAAGGATTATGATTCAT  893
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGGTTTGACAATCTTAGGGAAATTAAGTAAGCAAAGGATTATGATTCAT  900

seq1  GTCATGGTAGGTGTAGGAGAC-TATGTC-TAACAGAAGAGACTTCATTTA  941
      ||||||||||||||||||||| |||||| |||||||||||||||| ||||
seq2  GTCATGGTAGGTGTAGGAGACTTATGTCTTAACAGAAGAGACTTC-TTTA  949

seq1  GATTCCTAACAATTAAATGAATCTATTCTAACTTGAAATCAAAGTATTGC  991
      |  | ||||  |||||| ||||||||||| || ||||||||||||| |||
seq2  GGATTCTAAACATTAAAGGAATCTATTCT-ACCTGAAATCAAAGTA-TGC  997

seq1  ATTCTGAGAACCCAACATTGATTTTT  1017
      ||||||| ||||||||||||| ||||
seq2  ATTCTGAAAACCCAACATTGAATTTT  1023