BAC Information

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BAC

Clone NameB6Ng01-099M09
Chromosome12 (Build37)
Map Location 58,404,407 - 58,593,134
singlet/doubletdoublet
Overlap genenone
Upstream geneMbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21, AU021838
Downstream geneLOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761, Sstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099M09.bB6Ng01-099M09.g
ACCDH909474DH909475
length1,1031,014
definitionDH909474|Mus musculus domesticus DNA, BAC clone: B6Ng01-099M09, 5' end.DH909475|Mus musculus domesticus DNA, BAC clone: B6Ng01-099M09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,592,016 - 58,593,134)(58,404,407 - 58,405,417)
sequence
gaattcttatattctcatattagtcaacatggaaattatatcctaaagta
gaacctgggccatacctggtggcaccagtctataatctcaaaacccattg
ggatgtgacaagaaaatctcacaatgtagcttctgacattcctgggcgac
acaatttcacagcaaactccccgattctctggctctttctgaatttcttt
tcctgctatgactagttttcttgtgttagacttttaaatgttgatctatg
ctttcatttttgctttacatgtgtgtgtatacatatatgtgcacatgtat
gcatatatggaggttagggcttgacattaaatgtcttcctctgtttcttt
ccaccttgttttttgagactgggtccctcactgaacctggagctcactgg
ttcatctaagatataaagactggccagagattaccttagcctagaggtaa
gatggctccttatcctgatgaataccagagagttctacaatctaaatact
actgaactttaaaattaaaaatggctaatattgtaaattttgttatattt
tactaccataaaaatatcagggttggagagatggctcagtggttaggaac
acgtgcagttgcagcggacccaaattcagttctcagtgtccccatcaagt
ggctcacaaccacaagtacctccagtcccgggggattcgatgccctcctt
cttctggcctctgtgggcatgtgcatgcaggtggtgcacatacagacaag
ccagcacaaacacatatgcaataaatacaaaataaatttgaactatcata
tctcgaaggtatgaattagagctgtggcaatgcagacgggaagaagggga
ggattggaaaggcacggagaatagaggctcagaagtacgtagcaactttt
gcagtagaagagagtaaaggagagacgagaggtcaactcccatggtattg
gctactctctggtatgtggctagggaacagcaatattctgagcaggagag
ggaagagcagctccgtgaggagctcggctgtgaagatagtttgtgatgct
acaaccttaggtttggtgagaaggtgaatggtggcgatctaagtaaatgc
ttg
gaattctgagcagagcatacgcgaattaggcaatgaagtcccatctgagg
accttgaactaccaggaagaaaacccagcaattttcaggtcctccaacct
tgtcgggatgaaggggcatctgcagagtgcaggtgcgtgttgggtttagt
gttttaatctaagaagtaagatttggaacaacatgctttccttaatacat
tttccctcttcttcatttttggtgtcggataaatttaatgtgctagtgac
ttggaaacaatttcagtgtgaaggggcgggggaagaactctgagagaggg
ggctaggagggggagcaacagttgggatgtaaagaaataaaatagttaat
taatttaataaacaatttcaggtctctataagggcttccattactgccat
ggtattgatataatgtatccagatagctgagagatagcacaaaataggtt
taaagaaagcaatgaaatttgtttcctattcaatcttattttctgtgact
ttatcatataaggatacttgtgaaactggtgtaaatgatgtattatttat
taaagctcaaacctgcccaaaggtgtttatttttccatcactatgttctc
tgttttgggtgatttgaatgcttttagagtaatcctgtgctctgtctgtc
ttttgcctttcttattattctacattctgtgcctttaagtcatcgtctgt
gaggaactttgagtctatgatacctgtgtttattatgagtgagattatgc
tactttgataattaatcatgtgcagtaaagataacactagattttaaaaa
cgacaacataattctgatttttgtatttttctgggagttttactttaaaa
gttttgtggagttgctattctgttcagaattgttcagatatatttcattt
gatatcaataaataataaaatcaataactgtattggtgttcctccttgct
tagtgtcagattcttactgaagtacaattgggagaatattttagggaata
gagtgagggatgga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_58592016_58593134
seq2: B6Ng01-099M09.b_47_1149 (reverse)

seq1  CAAGCATTTACTTAGTATCGCCA-CATTCA-CATCTCACCAAACCCTAAG  48
      ||||||||||||||| ||||||| |||||| | |||||||||| ||||||
seq2  CAAGCATTTACTTAG-ATCGCCACCATTCACCTTCTCACCAAA-CCTAAG  48

seq1  GTTTGTAAGCATCAAACAAAACTAATCCTCACAGGCCGAGCTCCTCACGG  98
      | |||| |||||||    ||||| ||| ||||| ||||||||||||||||
seq2  G-TTGT-AGCATCA---CAAACT-ATCTTCACA-GCCGAGCTCCTCACGG  91

seq1  AGGCCTGCTTCTTCCCTCTCCTTGCCTCAGAATATTGCTGTTTCCCTAGC  148
      ||  |||| |||||||||||||   ||||||||||||||| |||||||||
seq2  AG--CTGC-TCTTCCCTCTCCT--GCTCAGAATATTGCTG-TTCCCTAGC  135

seq1  CACCATACCAGAGAGTTAGCCAATACCATGGGAGTTGACCTCCTCGTCTC  198
      || |||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  CA-CATACCAGAGAG-TAGCCAATACCATGGGAGTTGACCT-CTCGTCTC  182

seq1  TCCTTTACTCTCTTCTACTGCAAAAGTTGCTACGTACTTCTGAGCCTCTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTACTCTCTTCTACTGCAAAAGTTGCTACGTACTTCTGAGCCTCTA  232

seq1  TTCTCCGTGCCTTTCCAATCCTCCCCTTCTTCCCGTCTGCATTGCCACAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCGTGCCTTTCCAATCCTCCCCTTCTTCCCGTCTGCATTGCCACAG  282

seq1  CTCTAATTCATACCTTCGAGATATGATAGTTCAAATTTATTTTGTATTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATTCATACCTTCGAGATATGATAGTTCAAATTTATTTTGTATTTA  332

seq1  TTGCATATGTGTTTGTGCTGGCTTGTCTGTATGTGCACCACCTGCATGCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATATGTGTTTGTGCTGGCTTGTCTGTATGTGCACCACCTGCATGCA  382

seq1  CATGCCCACAGAGGCCAGAAGAAGGAGGGCATCGAATCCCCCGGGACTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCACAGAGGCCAGAAGAAGGAGGGCATCGAATCCCCCGGGACTGG  432

seq1  AGGTACTTGTGGTTGTGAGCCACTTGATGGGGACACTGAGAACTGAATTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTTGTGGTTGTGAGCCACTTGATGGGGACACTGAGAACTGAATTT  482

seq1  GGGTCCGCTGCAACTGCACGTGTTCCTAACCACTGAGCCATCTCTCCAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCGCTGCAACTGCACGTGTTCCTAACCACTGAGCCATCTCTCCAAC  532

seq1  CCTGATATTTTTATGGTAGTAAAATATAACAAAATTTACAATATTAGCCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATATTTTTATGGTAGTAAAATATAACAAAATTTACAATATTAGCCA  582

seq1  TTTTTAATTTTAAAGTTCAGTAGTATTTAGATTGTAGAACTCTCTGGTAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAATTTTAAAGTTCAGTAGTATTTAGATTGTAGAACTCTCTGGTAT  632

seq1  TCATCAGGATAAGGAGCCATCTTACCTCTAGGCTAAGGTAATCTCTGGCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCAGGATAAGGAGCCATCTTACCTCTAGGCTAAGGTAATCTCTGGCC  682

seq1  AGTCTTTATATCTTAGATGAACCAGTGAGCTCCAGGTTCAGTGAGGGACC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTATATCTTAGATGAACCAGTGAGCTCCAGGTTCAGTGAGGGACC  732

seq1  CAGTCTCAAAAAACAAGGTGGAAAGAAACAGAGGAAGACATTTAATGTCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCAAAAAACAAGGTGGAAAGAAACAGAGGAAGACATTTAATGTCA  782

seq1  AGCCCTAACCTCCATATATGCATACATGTGCACATATATGTATACACACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTAACCTCCATATATGCATACATGTGCACATATATGTATACACACA  832

seq1  CATGTAAAGCAAAAATGAAAGCATAGATCAACATTTAAAAGTCTAACACA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAAAGCAAAAATGAAAGCATAGATCAACATTTAAAAGTCTAACACA  882

seq1  AGAAAACTAGTCATAGCAGGAAAAGAAATTCAGAAAGAGCCAGAGAATCG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACTAGTCATAGCAGGAAAAGAAATTCAGAAAGAGCCAGAGAATCG  932

seq1  GGGAGTTTGCTGTGAAATTGTGTCGCCCAGGAATGTCAGAAGCTACATTG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTTGCTGTGAAATTGTGTCGCCCAGGAATGTCAGAAGCTACATTG  982

seq1  TGAGATTTTCTTGTCACATCCCAATGGGTTTTGAGATTATAGACTGGTGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATTTTCTTGTCACATCCCAATGGGTTTTGAGATTATAGACTGGTGC  1032

seq1  CACCAGGTATGGCCCAGGTTCTACTTTAGGATATAATTTCCATGTTGACT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGGTATGGCCCAGGTTCTACTTTAGGATATAATTTCCATGTTGACT  1082

seq1  AATATGAGAATATAAGAATTC  1119
      |||||||||||||||||||||
seq2  AATATGAGAATATAAGAATTC  1103

seq1: chr12_58404407_58405417
seq2: B6Ng01-099M09.g_72_1084

seq1  GAATTCTGAGCAGAGCATACGCGAATTAGGCAATGAAGTCCCATCTGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGCAGAGCATACGCGAATTAGGCAATGAAGTCCCATCTGAGG  50

seq1  ACCTTGAACTACCAGGAAGAAAACCCAGCAATTTTCAGGTCCTCCAACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAACTACCAGGAAGAAAACCCAGCAATTTTCAGGTCCTCCAACCT  100

seq1  TGTCGGGATGAAGGGGCATCTGCAGAGTGCAGGTGCGTGTTGGGTTTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGGGATGAAGGGGCATCTGCAGAGTGCAGGTGCGTGTTGGGTTTAGT  150

seq1  GTTTTAATCTAAGAAGTAAGATTTGGAACAACATGCTTTCCTTAATACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATCTAAGAAGTAAGATTTGGAACAACATGCTTTCCTTAATACAT  200

seq1  TTTCCCTCTTCTTCATTTTTGGTGTCGGATAAATTTAATGTGCTAGTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCTTCTTCATTTTTGGTGTCGGATAAATTTAATGTGCTAGTGAC  250

seq1  TTGGAAACAATTTCAGTGTGAAGGGGCGGGGGAAGAACTCTGAGAGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAACAATTTCAGTGTGAAGGGGCGGGGGAAGAACTCTGAGAGAGGG  300

seq1  GGCTAGGAGGGGGAGCAACAGTTGGGATGTAAAGAAATAAAATAGTTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGGAGGGGGAGCAACAGTTGGGATGTAAAGAAATAAAATAGTTAAT  350

seq1  TAATTTAATAAACAATTTCAGGTCTCTATAAGGGCTTCCATTACTGCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTAATAAACAATTTCAGGTCTCTATAAGGGCTTCCATTACTGCCAT  400

seq1  GGTATTGATATAATGTATCCAGATAGCTGAGAGATAGCACAAAATAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTGATATAATGTATCCAGATAGCTGAGAGATAGCACAAAATAGGTT  450

seq1  TAAAGAAAGCAATGAAATTTGTTTCCTATTCAATCTTATTTTCTGTGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAGCAATGAAATTTGTTTCCTATTCAATCTTATTTTCTGTGACT  500

seq1  TTATCATATAAGGATACTTGTGAAACTGGTGTAAATGATGTATTATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATATAAGGATACTTGTGAAACTGGTGTAAATGATGTATTATTTAT  550

seq1  TAAAGCTCAAACCTGCCCAAAGGTGTTTATTTTTCCATCACTATGTTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTCAAACCTGCCCAAAGGTGTTTATTTTTCCATCACTATGTTCTC  600

seq1  TGTTTTGGGTGATTTGAATGCTTTTAGAGTAATCCTGTGCTCTGTCTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGGTGATTTGAATGCTTTTAGAGTAATCCTGTGCTCTGTCTGTC  650

seq1  TTTTGCCTTTCTTATTATTCTACATTCTGTGCCTTTAAGTCATCGTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCCTTTCTTATTATTCTACATTCTGTGCCTTTAAGTCATCGTCTGT  700

seq1  GAGGAACTTTGAGTCTATGATACCTGTGTTTATTATGAGTGAGATTATGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAACTTTGAGTCTATGATACCTGTGTTTATTATGAGTGAGATTATGC  750

seq1  TACTTTGATAATTAATCATGTGCAGTAAAGATAACACTAGATTTTAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTTGATAATTAATCATGTGCAGTAAAGATAACACTAGATTTTAAAAA  800

seq1  CGACAACATAATTCTGATTTTTGTA-TTTTCT-GGAGTTTTACTTTAAAA  848
      ||||||||||||||||||||||||| |||||| |||||||||||||||||
seq2  CGACAACATAATTCTGATTTTTGTATTTTTCTGGGAGTTTTACTTTAAAA  850

seq1  GTTTTGTGGAGTTGCTATTCTGTTCAGAATTGTTCAGATATA-TTCA-TT  896
      |||||||||||||||||||||||||||||||||||||||||| |||| ||
seq2  GTTTTGTGGAGTTGCTATTCTGTTCAGAATTGTTCAGATATATTTCATTT  900

seq1  GATATCAATACATAATAAAATCAATAACTGTATTGGTGTTCCTCC-TGCT  945
      |||||||||| |||||||||||||||||||||||||||||||||| ||||
seq2  GATATCAATAAATAATAAAATCAATAACTGTATTGGTGTTCCTCCTTGCT  950

seq1  TAGTGTCAGATTCTTACTGAAGTACAATTGGGAGTATATTTTAGGGTATA  995
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  TAGTGTCAGATTCTTACTGAAGTACAATTGGGAGAATATTTTAGGGAATA  1000

seq1  GAGGTGAGGATGATGG  1011
      || ||||||  |||||
seq2  GA-GTGAGG--GATGG  1013