BAC Information

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BAC

Clone NameB6Ng01-100L24
Chromosome12 (Build37)2 (Build37)
Map Location 95,992,280 - 95,993,433143,554,433 - 143,554,956
singlet/doubletsingletsinglet
Overlap genenone
Upstream gene2610022K04Rik-ps, EG633639
Downstream geneLOC217786, LOC100039603, LOC667688, Flrt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100L24.bB6Ng01-100L24.g
ACCDH910149DH910150
length1,1381,164
definitionDH910149|Mus musculus domesticus DNA, BAC clone: B6Ng01-100L24, 5' end.DH910150|Mus musculus domesticus DNA, BAC clone: B6Ng01-100L24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(95,992,280 - 95,993,433)(143,554,433 - 143,554,956)
sequence
gaattcacttcactgggtaaaatccatagccatagttgatcaagttgtca
gacttttaggaatctaaacatgacactgaaaatacttcatattatattga
gcatttatataagtaattgcatgaccaaaataagaaccccccagaataaa
ccacactaaattaaatactaaaaaatattattataaattttgatgtaaat
catccagaagggataattaacttgtatatagtacaaatataaccaaagtg
ctttatttaattttgttcattattctgcttaattaaaaaatagaacatta
taggtatgtcattatatgaactaataaaaaatagaaaaaacatctattga
gaactagtataaaatagaaaaaaaatttattgagtaccttgtccatagtc
aatatttacaattgagtaagactttgttataaaatctgaaccagaataaa
tctatcagaaaataaattggtataatatatacttaagactgaaatgctct
aaaaatggattagccaaagcaaatgcaatcttgagcatatagtatgacgt
aaggagggaggtctcggggttttctccattgaacatagtcatctgcccta
atcttattcaatttcaacgtcttgtttcttgtctctagctctagttatga
agtgaagtttattcagacacatttgttctgctctctgattcatttctgca
catagatcaggatttggtattttagtttctcaacatgcacaagtaattaa
taggagagttaatgtaaataagcttaggaaattcaccaaataatatgatt
taataataaggtaatataatggtcttgatgcaaacaaatgaaattttatg
cacaaaaatttaaaagaaagaaatacagaaacttttcatgaataaattat
agaaatttactaaatttcaagattataagttatgttttacccctagactc
agagttatgcttattcctctttgggaacacacatttcacacactttcgtg
aaacagcttccatgaaattcaccttgagtcttttgttcgggttttgttgt
ttgtttgtacatttagctcttgggaacttatttagtgattttgtatacct
ctgcatcattaatttgattcataagggaaacttcattg
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatctttgaaggtctgatagaactctgcactaaacccgtctggtc
ctgggctttttttggctgggagactattaataactgcttctatttcttta
ggggatatgggactgtttagaaggtcaacttgatcctgattcaactttgg
tacctggtatctgtccagaaatttgtccatttcgtccaggttttccagtt
ttgttgagtatagccttttgtagaaggatctgatggtgttttggatttct
tcaggatctgttgttatgtctcccttttcatttctgattttgttaattag
gattttgtccctgtgccctttagtgagtctagctaagggtttatctatct
tgttgattttctcaaagaaccaactcctcgtttgggttaattctttgaat
agttcttcttgtttccacttgggttgatttcaccccctgagtttgaatat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctagag
cttttagatgtgttgtcaagctgctagtatgtgctcttctcccgtttttt
cttgaaggcactcatagctatgagtttccctcttagaaatgcttcattgt
gtcccaaaggtttggtacgttgtggcttcatttcattaacctcctaaaag
gtgttaatttcttctgtattcctccttgaccaagtttcatggagaagagg
gttgttcaatttccaagtggaaagttggcctttcggtatatattttgtta
ttgaagatcagcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_95992280_95993433
seq2: B6Ng01-100L24.b_50_1187 (reverse)

seq1  CAATGAAGGGTTTCATTATGACATTCAAATTAGATGATTGCAGA-GTATA  49
      ||||||| | || | |||||  | |||||||| |||| |||||| |||||
seq2  CAATGAA-GTTTCCCTTATG--AATCAAATTA-ATGA-TGCAGAGGTATA  45

seq1  CAAAAATCAACTTAAAATAAGTT-CCAAGAGCTAAAATGTAAACAAACAA  98
      | |||||| |||  ||||||||| ||||||||| ||||||  ||||||||
seq2  C-AAAATC-ACT--AAATAAGTTCCCAAGAGCT-AAATGT--ACAAACAA  88

seq1  ACAAACAAAAACCCGAAACAAAAGAACTCTAGGTGAAATTTCATTGGAAG  148
      ||||   |||||||| |||||||| |||| ||||| ||||||| ||||||
seq2  ACAA--CAAAACCCG-AACAAAAG-ACTCAAGGTG-AATTTCA-TGGAAG  132

seq1  CTGTTTCACGAAGGTGTTGTGAAATGTGTTGTTCCAAAGAGGAATAAGCA  198
      |||||||||||| ||| ||||||||||||  | |||||||||||||||||
seq2  CTGTTTCACGAAAGTG-TGTGAAATGTGTGTTCCCAAAGAGGAATAAGCA  181

seq1  TAACTCTGAGTCTAGGGGTAAAACATAACTTATAATCTTGAAATTTAGTA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCTGAGTCTAGGGGTAAAACATAACTTATAATCTTGAAATTTAGTA  231

seq1  AATTTCTATAATTTATTCATG-AAAGTTTCTGTATTTCTTTCTTTTAAAT  297
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AATTTCTATAATTTATTCATGAAAAGTTTCTGTATTTCTTTCTTTTAAAT  281

seq1  TTTTGTGCATAAAATTTCATTTGTTTGCATCAAGACCATTATATTACCTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTGCATAAAATTTCATTTGTTTGCATCAAGACCATTATATTACCTT  331

seq1  ATTATTAAATCATATTATTTGGTGAATTTCCTAAGCTTATTTACATTAAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTAAATCATATTATTTGGTGAATTTCCTAAGCTTATTTACATTAAC  381

seq1  TCTCCTATTAATTACTTGTGCATGTTGAGAAACTAAAATACCAAATCCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTATTAATTACTTGTGCATGTTGAGAAACTAAAATACCAAATCCTG  431

seq1  ATCTATGTGCAGAAATGAATCAGAGAGCAGAACAAATGTGTCTGAATAAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATGTGCAGAAATGAATCAGAGAGCAGAACAAATGTGTCTGAATAAA  481

seq1  CTTCACTTCATAACTAGAGCTAGAGACAAGAAACAAGACGTTGAAATTGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTCATAACTAGAGCTAGAGACAAGAAACAAGACGTTGAAATTGA  531

seq1  ATAAGATTAGGGCAGATGACTATGTTCAATGGAGAAAACCCCGAGACCTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGATTAGGGCAGATGACTATGTTCAATGGAGAAAACCCCGAGACCTC  581

seq1  CCTCCTTACGTCATACTATATGCTCAAGATTGCATTTGCTTTGGCTAATC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTACGTCATACTATATGCTCAAGATTGCATTTGCTTTGGCTAATC  631

seq1  CATTTTTAGAGCATTTCAGTCTTAAGTATATATTATACCAATTTATTTTC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAGAGCATTTCAGTCTTAAGTATATATTATACCAATTTATTTTC  681

seq1  TGATAGATTTATTCTGGTTCAGATTTTATAACAAAGTCTTACTCAATTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGATTTATTCTGGTTCAGATTTTATAACAAAGTCTTACTCAATTGT  731

seq1  AAATATTGACTATGGACAAGGTACTCAATAAATTTTTTTTCTATTTTATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTGACTATGGACAAGGTACTCAATAAATTTTTTTTCTATTTTATA  781

seq1  CTAGTTCTCAATAGATGTTTTTTCTATTTTTTATTAGTTCATATAATGAC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTCTCAATAGATGTTTTTTCTATTTTTTATTAGTTCATATAATGAC  831

seq1  ATACCTATAATGTTCTATTTTTTAATTAAGCAGAATAATGAACAAAATTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTATAATGTTCTATTTTTTAATTAAGCAGAATAATGAACAAAATTA  881

seq1  AATAAAGCACTTTGGTTATATTTGTACTATATACAAGTTAATTATCCCTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGCACTTTGGTTATATTTGTACTATATACAAGTTAATTATCCCTT  931

seq1  CTGGATGATTTACATCAAAATTTATAATAATATTTTTTAGTATTTAATTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGATGATTTACATCAAAATTTATAATAATATTTTTTAGTATTTAATTT  981

seq1  AGTGTGGTTTATTCTGGGGGGTTCTTATTTTGGTCATGCAATTACTTATA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGTTTATTCTGGGGGGTTCTTATTTTGGTCATGCAATTACTTATA  1031

seq1  TAAATGCTCAATATAATATGAAGTATTTTCAGTGTCATGTTTAGATTCCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGCTCAATATAATATGAAGTATTTTCAGTGTCATGTTTAGATTCCT  1081

seq1  AAAAGTCTGACAACTTGATCAACTATGGCTATGGATTTTACCCAGTGAAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTCTGACAACTTGATCAACTATGGCTATGGATTTTACCCAGTGAAG  1131

seq1  TGAATTC  1154
      |||||||
seq2  TGAATTC  1138

seq1: chr2_143554433_143554956
seq2: B6Ng01-100L24.g_709_1231 (reverse)

seq1  AGGCTGATCTTCAATAACAAAATAAATAACAGAAAGCCAACATT-CACAT  49
      |||||||||||||||||||||||| ||| |  || |||||| || ||| |
seq2  AGGCTGATCTTCAATAACAAAATATATACCGAAAGGCCAACTTTCCACTT  50

seq1  GGAAACTGAACAACACTCTTCTCAATGATACCTTGGTCAAGGAAGGAATA  99
      ||||| |||||||| |||||||| |||| | ||||||||||| |||||||
seq2  GGAAATTGAACAACCCTCTTCTCCATGA-AACTTGGTCAAGG-AGGAATA  98

seq1  AAGAAAGAAATTAAAGACTTTTTAGAGTTTAATGACAATGAAGCCACAAC  149
       || ||||||||||   |||||  ||| ||||||| ||||||||||||||
seq2  CAG-AAGAAATTAACACCTTTTAGGAGGTTAATGA-AATGAAGCCACAAC  146

seq1  GTACCCAAACCTTTGGGACACAATGAAAGCATTTCTAAGAGGGAAACTCA  199
      ||| ||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTA-CCAAACCTTTGGGACACAATG-AAGCATTTCTAAGAGGGAAACTCA  194

seq1  TAGCTATGAGTGCCTTCAAGAAAAAACGGGAG-AGAGCACATACTAGCAG  248
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TAGCTATGAGTGCCTTCAAGAAAAAACGGGAGAAGAGCACATACTAGCAG  244

seq1  CTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACAACACATCTAAAAGCTCTAGAAAAAAAGGAAGCAAATTCACCCA  294

seq1  AGAGGAGTAGACGGCAGGAAATAATCAAACTCA-GGGGTGAAATCAA-CC  346
      ||||||||||||||||||||||| ||||||||| ||||||||||||| ||
seq2  AGAGGAGTAGACGGCAGGAAATATTCAAACTCAGGGGGTGAAATCAACCC  344

seq1  AAGTGGAAACAAGAAGAACTATTCAAAGAATTAA-CCAAACGAGGAGTTG  395
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAGTGGAAACAAGAAGAACTATTCAAAGAATTAACCCAAACGAGGAGTTG  394

seq1  GTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTGAGAAAATCAACAAGATAGATAAACCCTTAGCTAGACTCACTA  444

seq1  AAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCACAGGGACAAAATCCTAATTAACAAAATCAGAAATGAAAAGGGA  494

seq1  GACATAACAACAGATCCTGAAGAAATCCA  524
      |||||||||||||||||||||||||||||
seq2  GACATAACAACAGATCCTGAAGAAATCCA  523