BAC Information

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BAC

Clone NameB6Ng01-100P14
Chromosome12 (Build37)
Map Location 112,389,603 - 112,564,528
singlet/doubletdoublet
Overlap gene4930595D18Rik, Traf3, Amn, Cdc42bpb
Upstream gene3110009F21Rik, Dio3as, Dio3, EG629595, EG668245, LOC100040799, Ppp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1
Downstream geneA230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100P14.bB6Ng01-100P14.g
ACCDH910307DH910308
length1,046433
definitionDH910307|Mus musculus domesticus DNA, BAC clone: B6Ng01-100P14, 5' end.DH910308|Mus musculus domesticus DNA, BAC clone: B6Ng01-100P14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,563,479 - 112,564,528)(112,389,603 - 112,390,041)
sequence
gaattccctagcttcagcttacacctggttaaagatgaagtcaggattat
tcttgtgctgtcctcgacttgggttttcctgacagtctttggctgcccct
cctccccaggagcggtttcagttcccatcccatgtcaccgatgtctctga
agaagcaaaagaccttatccagagactaatatgcagcagagagcgccgac
ttgggcagaatggaatagaagactttaagaaacacgcattctttgaaggt
ctgaattgggagaatatacgaaaccttgaagcgccctacattcccgatgt
gagcagcccttcggacacgtccaacttcgatgtggacgacgacatgctga
gaaacattgtgagtgccaggcccgtggcctcctggggttgcttcatggtg
ggtctgagtcagcagtgtctgctgctgtctactgactgcgtcagccagtt
gtggagctggagctggaggggcggctcagcaggattacctggactcttcc
agagggacccaggctctgttcccagcacccatgtgaggcagctcagtgct
gcctgccgctccagctgtaggggctccaacactctcctctgtgtttgcag
gtgactgcatacatgtggcgcgcacacacacacacacacacacacacaca
cacacacaaaacctaaagcagctgggtgtggtaatgcacacctttaattt
cagcactcttgggaggcagaggcaagtagattgcacagttcaagaccagc
ctcatctcagagtgaattccagccctgtcatatgtgcatggttagaccct
gtctaaatattacattgtttaggtttgggcagttactttaaagctttcag
cttgattttcttttttgattaaaaaaaaagcgccctcattgtaacacaca
tgtgagacagtatgctctcattgtaacattcatgagaacagtttttcttt
ttttttcatattttacaccttttatcagtgtagaatggtaattgtgcaac
accgtcatgttcccacggctgcttcatgtattgtaaggcttcagga
ttacaagcccagcggccattcttctttgctgacagagtccgaggtcccag
tacagctctccagctcagacatgttctgggagtgagaacacatttccaaa
agtaaatagccaagaggctgcactaggaacttttgtggagaccatctaat
gtgcctaacgttcttatcggcagtttgtaacttcagcctctccagaggcc
tgagtgagatagaggcttagaccccagggtggcaatgtgtggacgtggta
gaagcaccaagaatcaaggcctagaaggagggcaccaggagtgggtgtgt
gccctccaaggggtatttgtcactttctctctctctctagtttcctgtag
tgactttgataggactcagaaccacctagaacaccagcctctgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_112563479_112564528
seq2: B6Ng01-100P14.b_47_1092 (reverse)

seq1  TCCTGAAGCCTTTACATACATGAAGCAGCCGTGGGAACAATGACGCTGTA  50
      ||||||||||||   ||||||||||||||||||||||| |||||| ||| 
seq2  TCCTGAAGCCTTACAATACATGAAGCAGCCGTGGGAAC-ATGACGGTGTT  49

seq1  GCACAATAACCAATCTAACACTGAATAAAAAGGTGTAAAATATGAAAAAA  100
      ||||||| |||| ||| |||||||   ||||||||||||||||| |||||
seq2  GCACAATTACCATTCT-ACACTGA--TAAAAGGTGTAAAATATG-AAAAA  95

seq1  AAAAGAAAAACTG-TCTCATGTATGTTACAATGAGAGCATACTGTCTCAC  149
      ||||||||||||| ||||||| ||||||||||||||||||||||||||||
seq2  AAAAGAAAAACTGTTCTCATGAATGTTACAATGAGAGCATACTGTCTCAC  145

seq1  ATGTGTGTTACAATGAGGGCGCTTTTTTTTTAAATCAAAAAAGAAAATCA  199
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATGTGTGTTACAATGAGGGCGCTTTTTTTTT-AATCAAAAAAGAAAATCA  194

seq1  AGCTGAAAGCTTTAAAGTAACTG-CCAAACCTAAACAATGTAATATTTAG  248
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGCTGAAAGCTTTAAAGTAACTGCCCAAACCTAAACAATGTAATATTTAG  244

seq1  ACAGGGTCTAACCATGCACATATGACAGGGCTGGAATTCACTCTGAGATG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGTCTAACCATGCACATATGACAGGGCTGGAATTCACTCTGAGATG  294

seq1  AGGCTGGTCTTGAACTGTGCAATCTACTTGCCTCTGCCTCCCAAGAGTGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGTCTTGAACTGTGCAATCTACTTGCCTCTGCCTCCCAAGAGTGC  344

seq1  TGAAATTAAAGGTGTGCATTACCACACCCAGCTGCTTTAGGTTTTGTGTG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTAAAGGTGTGCATTACCACACCCAGCTGCTTTAGGTTTTGTGTG  394

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCCACATGTATGCAGTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCCACATGTATGCAGTC  444

seq1  ACCTGCAAACACAGAGGAGAGTGTTGGAGCCCCTACAGCTGGAGCGGCAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCAAACACAGAGGAGAGTGTTGGAGCCCCTACAGCTGGAGCGGCAG  494

seq1  GCAGCACTGAGCTGCCTCACATGGGTGCTGGGAACAGAGCCTGGGTCCCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCACTGAGCTGCCTCACATGGGTGCTGGGAACAGAGCCTGGGTCCCT  544

seq1  CTGGAAGAGTCCAGGTAATCCTGCTGAGCCGCCCCTCCAGCTCCAGCTCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGAGTCCAGGTAATCCTGCTGAGCCGCCCCTCCAGCTCCAGCTCC  594

seq1  ACAACTGGCTGACGCAGTCAGTAGACAGCAGCAGACACTGCTGACTCAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGGCTGACGCAGTCAGTAGACAGCAGCAGACACTGCTGACTCAGA  644

seq1  CCCACCATGAAGCAACCCCAGGAGGCCACGGGCCTGGCACTCACAATGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCATGAAGCAACCCCAGGAGGCCACGGGCCTGGCACTCACAATGTT  694

seq1  TCTCAGCATGTCGTCGTCCACATCGAAGTTGGACGTGTCCGAAGGGCTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCATGTCGTCGTCCACATCGAAGTTGGACGTGTCCGAAGGGCTGC  744

seq1  TCACATCGGGAATGTAGGGCGCTTCAAGGTTTCGTATATTCTCCCAATTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCGGGAATGTAGGGCGCTTCAAGGTTTCGTATATTCTCCCAATTC  794

seq1  AGACCTTCAAAGAATGCGTGTTTCTTAAAGTCTTCTATTCCATTCTGCCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTCAAAGAATGCGTGTTTCTTAAAGTCTTCTATTCCATTCTGCCC  844

seq1  AAGTCGGCGCTCTCTGCTGCATATTAGTCTCTGGATAAGGTCTTTTGCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCGGCGCTCTCTGCTGCATATTAGTCTCTGGATAAGGTCTTTTGCTT  894

seq1  CTTCAGAGACATCGGTGACATGGGATGGGAACTGAAACCGCTCCTGGGGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAGACATCGGTGACATGGGATGGGAACTGAAACCGCTCCTGGGGA  944

seq1  GGAGGGGCAGCCAAAGACTGTCAGGAAAACCCAAGTCGAGGACAGCACAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGGCAGCCAAAGACTGTCAGGAAAACCCAAGTCGAGGACAGCACAA  994

seq1  GAATAATCCTGACTTCATCATTAACCAGGTGTAAGCTGAAGCTAGGGAAT  1048
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GAATAATCCTGACTTCATCTTTAACCAGGTGTAAGCTGAAGCTAGGGAAT  1044

seq1  TC  1050
      ||
seq2  TC  1046

seq1: chr12_112389603_112390041
seq2: B6Ng01-100P14.g_70_508

seq1  GAATTCTCACATGCCCAGCGGCCATTCTTCTTTGCTGACAGAGTCCGAGG  50
      ||||||| ||| ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTACAAGCCCAGCGGCCATTCTTCTTTGCTGACAGAGTCCGAGG  50

seq1  TCCCAGTACAGCTCTCCAGCTCAGACATGTTCTGGGAGTGAGAACACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTACAGCTCTCCAGCTCAGACATGTTCTGGGAGTGAGAACACATT  100

seq1  TCCAAAAGTAAATAGCCAAGAGGCTGCACTAGGAACTTTTGTGGAGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAAGTAAATAGCCAAGAGGCTGCACTAGGAACTTTTGTGGAGACCA  150

seq1  TCTAATGTGCCTAACGTTCTTATCGGCAGTTTGTAACTTCAGCCTCTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATGTGCCTAACGTTCTTATCGGCAGTTTGTAACTTCAGCCTCTCCA  200

seq1  GAGGCCTGAGTGAGATAGAGGCTTAGACCCCAGGGTGGCAATGTGTGGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCTGAGTGAGATAGAGGCTTAGACCCCAGGGTGGCAATGTGTGGAC  250

seq1  GTGGTAGAAGCACCAAGAATCAAGGCCTAGAAGGAGGGCACCAGGAGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAGAAGCACCAAGAATCAAGGCCTAGAAGGAGGGCACCAGGAGTGG  300

seq1  GTGTGTGCCCTCCAAGGGGTATTTGTCACTTTCTCTCTCTCTCTAGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGCCCTCCAAGGGGTATTTGTCACTTTCTCTCTCTCTCTAGTTTC  350

seq1  CTGTAGTGACTTTGATAGGACTCAGAACCACCTAGAACACCAGCCTCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTGACTTTGATAGGACTCAGAACCACCTAGAACACCAGCCTCTGT  400

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  439
      |||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  439