BAC Information

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BAC

Clone NameB6Ng01-101D20
Chromosome12 (Build37)
Map Location 58,963,328 - 59,094,396
singlet/doubletdoublet
Overlap genenone
Upstream geneSlc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
Downstream geneSstr1, Clec14a, LOC100040183, Sec23a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101D20.bB6Ng01-101D20.g
ACCDH910491DH910492
length9611,112
definitionDH910491|Mus musculus domesticus DNA, BAC clone: B6Ng01-101D20, 5' end.DH910492|Mus musculus domesticus DNA, BAC clone: B6Ng01-101D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,963,328 - 58,964,253)(59,093,277 - 59,094,396)
sequence
gaattctgctcaaaaccatttgacctatactttgttcttttgggggtggg
gtgggaggctttttgtttgtttcattagaaagtcatatttattcagatat
ccagtattatattttcaagcagtctcaggtattagtatacccaaatggca
tattaactatttaagtgtacatgtttgaatttcttaaaatacagactgct
atgttcatgctacatataatttaggaactttcaatgactacacagtgata
ttttaataaaagcacctgaaattgttaaacaagctaaattatgtataaca
caattctgaacgctttgtgatctattttgtttcaccttctattatatgat
ggtctttatccaaatccctacactaatgttacaaatgtgggtgttgttgt
aactttgtgcatcccttttagttctaggtccttcgtgttggtcttgggca
ggtgaagtcttcctgatgcaatcagaccataaaaggccagccctcattat
tgggaactgatgacttcaggaaaggagctctccgcacatactttccatgt
cctaagaatgcgggaagaaaatgtggtctaagtaatcagcagccctcagc
agatttgcagagccttgaccaggcagcttccagcctcctgaatgatgaga
aagaaatctgtgttactcacatgctttggtgggagactttttaatgaata
aatggaataatattatttcagtaggtgttataggtctgttttaattgaat
ttaaacatataaattaaatttatatgatcttgattttaactttggtaagt
ggcatgcactgaggaaaattgttaatttatttcagatttttctaatttgg
gtggaatacaagtttttaaagtatatccttaatgtttcttctggattttc
catggtgttcttgttatgttctccatttcatttctattttactaatttga
tctttttcttt
gaattctatgggatcccttgaccccacaagattagaacaaattgtcagag
ttagtttgaggccaagcagagcaattcagtgagaagctgagagaaggcag
attgaatcagtcaggctgaagaggagtttgagtcagaatagctgagttta
accagtcagccagagtccagaaagaactagaaagggtgagattattcagc
agtaaacctcagagatgacaattacatctggtggataaaagttacattta
cagtgtagcttttacctccccaccccaactttgatgtctatactttctcc
aatttattcacattgcacctgaaatattctttatataatacactaacaat
actgtatcttaagatacttcaacttattctatatatgttcataatcaaat
caaaaattagcacaacagaaaggacccactgccatctctagatcctagca
tccttatctcagtccaggtaccaatcctgaataaactattttaaattatt
gaaagaaagaaaaaatggtctttctaagttaatttttttgtgcattctct
ttcctttttaaaatgattcttctaacctctactcattcttcaggtctcag
ctagctcaaattgttatttcctatagaataatctcctgccctctaaccag
gcctatatatctcttctgggttgccatggcaccctgtttttaacacatac
cacactataaaaaaaatctctctttatctgctgtctctcctgcaggcaaa
aagtccttgacatccagaatagttccttatatcctgaatatccaagtgct
gattatgatggctgacagctaaacatccaggaccaagcaattacatgaga
cttggtatcatgacatttttctttaaagaacttataatttcttgactata
tgctagctctgataatgtatcaccattattgttttcacatcagtgaatta
cacacattttaaattacaacaatgttcccactagagttaggtacagcttt
tgtcttaagaagaccagcttcaagttagaatacaaacttatattgtaggt
agcaagtcttaaattagatatagatgaatcatacagatgtattctttaaa
aatagctactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_58963328_58964253
seq2: B6Ng01-101D20.b_44_977

seq1  GAATTCTGCTCAAAACCATTTGACCTATACTTTGTTCTTTTGGGGGTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTCAAAACCATTTGACCTATACTTTGTTCTTTTGGGGGTGGG  50

seq1  GTGGGAGGCTTTTTGTTTGTTTCATTAGAAAGTCATATTTATTCAGATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAGGCTTTTTGTTTGTTTCATTAGAAAGTCATATTTATTCAGATAT  100

seq1  CCAGTATTATATTTTCAAGCAGTCTCAGGTATTAGTATACCCAAATGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTATTATATTTTCAAGCAGTCTCAGGTATTAGTATACCCAAATGGCA  150

seq1  TATTAACTATTTAAGTGTACATGTTTGAATTTCTTAAAATACAGACTGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAACTATTTAAGTGTACATGTTTGAATTTCTTAAAATACAGACTGCT  200

seq1  ATGTTCATGCTACATATAATTTAGGAACTTTCAATGACTACACAGTGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATGCTACATATAATTTAGGAACTTTCAATGACTACACAGTGATA  250

seq1  TTTTAATAAAAGCACCTGAAATTGTTAAACAAGCTAAATTATGTATAACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATAAAAGCACCTGAAATTGTTAAACAAGCTAAATTATGTATAACA  300

seq1  CAATTCTGAACGCTTTGTGATCTATTTTGTTTCACCTTCTATTATATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCTGAACGCTTTGTGATCTATTTTGTTTCACCTTCTATTATATGAT  350

seq1  GGTCTTTATCCAAATCCCTACACTAATGTTACAAATGTGGGTGTTGTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTTATCCAAATCCCTACACTAATGTTACAAATGTGGGTGTTGTTGT  400

seq1  AACTTTGTGCATCCCTTTTAGTTCTAGGTCCTTCGTGTTGGTCTTGGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTGTGCATCCCTTTTAGTTCTAGGTCCTTCGTGTTGGTCTTGGGCA  450

seq1  GGTGAAGTCTTCCTGATGCAATCAGACCATAAAAGGCCAGCCCTCATTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGAAGTCTTCCTGATGCAATCAGACCATAAAAGGCCAGCCCTCATTAT  500

seq1  TGGGAACTGATGACTTCAGGAAAGGAGCTCTCCGCACATACTTTCCATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAACTGATGACTTCAGGAAAGGAGCTCTCCGCACATACTTTCCATGT  550

seq1  CCTAAGAATGCGGGAAGAAAATGTGGTCTAAGTAATCAGCAGCCCTCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAGAATGCGGGAAGAAAATGTGGTCTAAGTAATCAGCAGCCCTCAGC  600

seq1  AGATTTGCAGAGCCTTGACCAGGCAGCTTCCAGCCTCCTGAATGATGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTGCAGAGCCTTGACCAGGCAGCTTCCAGCCTCCTGAATGATGAGA  650

seq1  AAGAAATCTGTGTTACTCACATGCTTTGGTGGGAGAC-TTTTAATGAATA  699
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AAGAAATCTGTGTTACTCACATGCTTTGGTGGGAGACTTTTTAATGAATA  700

seq1  AATGGAATAATATTATTTCAGTAGGTGTTATAGGTCTGTTTAAATTGAAT  749
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AATGGAATAATATTATTTCAGTAGGTGTTATAGGTCTGTTTTAATTGAAT  750

seq1  TTAAACATATAAATTAAATTTATATGATCTTGA-TTTAACTTTGGTAAGT  798
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TTAAACATATAAATTAAATTTATATGATCTTGATTTTAACTTTGGTAAGT  800

seq1  GGCATGCACTGAGG-AAATTGTTAATTTATTTCAGA-TTTTCTAATTT-G  845
      |||||||||||||| ||||||||||||||||||||| ||||||||||| |
seq2  GGCATGCACTGAGGAAAATTGTTAATTTATTTCAGATTTTTCTAATTTGG  850

seq1  GTGGAATACAAGTTTTTAAAGTATATCCTT-ATGTTTC-TCTGGA-TTTC  892
      |||||||||||||||||||||||||||||| ||||||| |||||| ||||
seq2  GTGGAATACAAGTTTTTAAAGTATATCCTTAATGTTTCTTCTGGATTTTC  900

seq1  CATGGTGTTCTTGTTATGTTCTCCATTTCATTTC  926
      ||||||||||||||||||||||||||||||||||
seq2  CATGGTGTTCTTGTTATGTTCTCCATTTCATTTC  934

seq1: chr12_59093277_59094396
seq2: B6Ng01-101D20.g_68_1179 (reverse)

seq1  ACAGTTAGCTATTTTTTAAAGATACATTCTGTATTGATTTTCATCTAATT  50
      |||| ||||||||||| ||  ||||| |||||| |||  ||||||||  |
seq2  ACAG-TAGCTATTTTTAAAGAATACA-TCTGTA-TGA--TTCATCTA--T  43

seq1  ATCTGATTTAAGACTTGCTACCTACAATATTAGTTTTGTATTCTAACTTG  100
      |||| ||||||||||||||||||||||||| || ||||||||||||||||
seq2  ATCTAATTTAAGACTTGCTACCTACAATATAAG-TTTGTATTCTAACTTG  92

seq1  AAGCTGGTCTTCTTAAGAC-AAAGCTGTACCTAACTCTAGTTGGGAACAT  149
      ||||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  AAGCTGGTCTTCTTAAGACAAAAGCTGTACCTAACTCTAG-TGGGAACAT  141

seq1  TGTTGTAATTTAAAATGTGTGTAATTCACTGATGTGAAAACAATAATGGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAATTTAAAATGTGTGTAATTCACTGATGTGAAAACAATAATGGT  191

seq1  GATACATTATCAGAGCTAGCATATAGTCAAGAAATTATAAGTTCTTTAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATTATCAGAGCTAGCATATAGTCAAGAAATTATAAGTTCTTTAAA  241

seq1  GGAAAATGTCATGATACCAAGTCTCATGTAATTGCTTGGTCCTGGATGTT  299
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATGTCATGATACCAAGTCTCATGTAATTGCTTGGTCCTGGATGTT  291

seq1  TAGCTGTCAGCCATCATAATCAGCACTTGGATATTCAGGATATAAGGAAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGTCAGCCATCATAATCAGCACTTGGATATTCAGGATATAAGGAAC  341

seq1  TATTCTGGATGTCAAGGACTTTTTGCCTGCAGGAGAGACAGCAGATAAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGGATGTCAAGGACTTTTTGCCTGCAGGAGAGACAGCAGATAAAG  391

seq1  AGAGATTTTTTTTATAGTGTGGTATGTGTTAAAAACAGGGTGCCATGGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATTTTTTTTATAGTGTGGTATGTGTTAAAAACAGGGTGCCATGGCA  441

seq1  ACCCAGAAGAGATATATAGGCCTGGTTAGAGGGCAGGAGATTATTCTATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGAAGAGATATATAGGCCTGGTTAGAGGGCAGGAGATTATTCTATA  491

seq1  GGAAATAACAATTTGAGCTAGCTGAGACCTGAAGAATGAGTAGAGGTTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATAACAATTTGAGCTAGCTGAGACCTGAAGAATGAGTAGAGGTTAG  541

seq1  AAGAATCATTTTAAAAAGGAAAGAGAATGCACAAAAAAATTAACTTAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCATTTTAAAAAGGAAAGAGAATGCACAAAAAAATTAACTTAGAA  591

seq1  AGACCATTTTTTCTTTCTTTCAATAATTTAAAATAGTTTATTCAGGATTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATTTTTTCTTTCTTTCAATAATTTAAAATAGTTTATTCAGGATTG  641

seq1  GTACCTGGACTGAGATAAGGATGCTAGGATCTAGAGATGGCAGTGGGTCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTGGACTGAGATAAGGATGCTAGGATCTAGAGATGGCAGTGGGTCC  691

seq1  TTTCTGTTGTGCTAATTTTTGATTTGATTATGAACATATATAGAATAAGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTGTGCTAATTTTTGATTTGATTATGAACATATATAGAATAAGT  741

seq1  TGAAGTATCTTAAGATACAGTATTGTTAGTGTATTATATAAAGAATATTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTATCTTAAGATACAGTATTGTTAGTGTATTATATAAAGAATATTT  791

seq1  CAGGTGCAATGTGAATAAATTGGAGAAAGTATAGACATCAAAGTTGGGGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTGCAATGTGAATAAATTGGAGAAAGTATAGACATCAAAGTTGGGGT  841

seq1  GGGGAGGTAAAAGCTACACTGTAAATGTAACTTTTATCCACCAGATGTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGGTAAAAGCTACACTGTAAATGTAACTTTTATCCACCAGATGTAA  891

seq1  TTGTCATCTCTGAGGTTTACTGCTGAATAATCTCACCCTTTCTAGTTCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATCTCTGAGGTTTACTGCTGAATAATCTCACCCTTTCTAGTTCTT  941

seq1  TCTGGACTCTGGCTGACTGGTTAAACTCAGCTATTCTGACTCAAACTCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGACTCTGGCTGACTGGTTAAACTCAGCTATTCTGACTCAAACTCCT  991

seq1  CTTCAGCCTGACTGATTCAATCTGCCTTCTCTCAGCTTCTCACTGAATTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCCTGACTGATTCAATCTGCCTTCTCTCAGCTTCTCACTGAATTG  1041

seq1  CTCTGCTTGGCCTCAAACTAACTCTGACAATTTGTTCTAATCTTGTGGGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTTGGCCTCAAACTAACTCTGACAATTTGTTCTAATCTTGTGGGG  1091

seq1  TCAAGGGATCCCATAGAATTC  1120
      |||||||||||||||||||||
seq2  TCAAGGGATCCCATAGAATTC  1112