BAC Information

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BAC

Clone NameB6Ng01-101N14
Chromosome12 (Build37)
Map Location 51,422,964 - 51,487,331
singlet/doubletdoublet
Overlap genePrkcm
Upstream geneLOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424, LOC665071, LOC665077, LOC100039455
Downstream geneLOC100039517, LOC636070, LOC100039525, 6030408C04Rik, Scfd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101N14.bB6Ng01-101N14.g
ACCDH910911DH910912
length1,1841,209
definitionDH910911|Mus musculus domesticus DNA, BAC clone: B6Ng01-101N14, 5' end.DH910912|Mus musculus domesticus DNA, BAC clone: B6Ng01-101N14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,422,964 - 51,424,151)(51,486,107 - 51,487,331)
sequence
gaattcattaagtaactgtcatgagacctactgctaatcaaagtaaaagg
aaattgattggaatcaccaatttgtcaaagaatgaattgaatggataaaa
aatgaaaagtacctgtcacatgaaaattaattcatcttctattatgagac
tgaaaacgaacagatggaacatattatagaatgtaaacagaatcaataag
gaacagaaacagccatacttaagaaataaaatttaacaaaaccaaatgaa
aagagacaaagtaaataaataaatataaaagggtctactataccaagtaa
aaatatttctaaatgtaattgcacctcaaagatcaacacccaaacacata
aagcaaaaaaactagtaatgctaaggagagagtaactttggtaaaataat
aacaggagactttaacattctacctttaatatattcatctttatttatat
atatttcattatataatataaataatgttatatattatatgataatattt
tatatacatttacatgaaacaatatgatatttaataaatttattgattca
cataactgtatacattaatatataaattatatacataaatttctaagttt
atatgtttatatttaataatatatgtgttaatataattgatgtatataac
aaaatttaaatacagatataattaaaagaaatataaaatatttatataat
aatcacatagatcatagaccatatatatcatattatacatatttactttt
aatatattttataatcatagatgacatacttaatgcataatataaaatat
aaataagtatagtaaaaataatacgtaaaatatatttaattatttataat
ttatgttatatttaacataatataataaaatatatcataatatcaggaag
aaaatatagtaaatttgtactttgagttatataaatgtaacagatttgtg
caggacagttctactttgcaagttcaggatctccattctcctcatcagca
tgtaagatatttatagagtaatataagatgggatggcacagaatgtaaac
tccaacaattaaaactttaaattcatattggatcaggattggtactatga
caataaactaggtagaaaataaccaccaacaaggaatataaaacaaaacc
tggaaactgcattaatgtatggaaactgggaaac
gaattcttgatgacctggtgtaaactgagcaaaggcaagggtgaattaca
ggaggtcacttcacagtgcaggttaaatggatgcttgaactgtacctcct
gagatgcagacctcaagactgcagggttctgctgcccttgcttagacaga
ggagaccttggagaaagcgggcaactcgaaagcttcctgggtagttccca
ggggacctcagagtcctttatcctgattgtccactgaaaattttgaaatg
aattttccaagaaattctgaggagtccgttggttagcgtggctacaggaa
aaagggaccagattaatgatgttccttgccagagagttttgaactcactt
tctgatactccagaggcatcacagacacaagcttcctagttgctttctaa
gagaagagaaggaaagtggtgggagaatgtggctgaaaactgatttttaa
aaaaatcaaggtttgcagagtcgaactaggcagaaaatgtactaggatgc
acagtaccaggaaaataaaaaataaaagctttgtagtgtttccatgaaat
cttttggtaaaaaagatgcaatatgaaacccagattagctcactctctat
ccagcgattacagtttcccaagtggcgatactgtggttatttatatagta
gctgggattcctggaatagttgtgtgtagcttaggttcttgtagaaatga
gaaataagcaggagtagccccatggttctggcctgaaggtaaagctggat
tgtgacagacatgtgggcccatgggatagttaatgaaatttctaaattac
tggtgcagaaataagaatacatagaatacattctcagatatttatagtaa
attccattgattggtttagattcccccttctctctattaaaatgccccat
atccaaagtacttaagagcggaatagttttcaaatattataggaatgtaa
tttgaatattataagccattgaaattttatccgacatttagaagtgttaa
atgaggctttgggattgtttaatttatatttctgtcaatcagctatagca
attataattattaaatgtaaaggattaaagcttgtcctcccctcccttct
tgtctttcctgggtatgcactgtatgaatacagccagcttcaaatatttc
ctgagtagagtctggttccggacgttggatgttagagtgagatcggtcaa
tgtgggttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_51422964_51424151
seq2: B6Ng01-101N14.b_50_1233

seq1  GAATTCATTAAGTAACTGTCATGAGACCTACTGCTAATCAAAGTAAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAAGTAACTGTCATGAGACCTACTGCTAATCAAAGTAAAAGG  50

seq1  AAATTGATTGGAATCACCAATTTGTCAAAGAATGAATTGAATGGATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGATTGGAATCACCAATTTGTCAAAGAATGAATTGAATGGATAAAA  100

seq1  AATGAAAAGTACCTGTCACATGAAAATTAATTCATCTTCTATTATGAGAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAAGTACCTGTCACATGAAAATTAATTCATCTTCTATTATGAGAC  150

seq1  TGAAAACGAACAGATGGAACATATTATAGAATGTAAACAGAATCAATAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACGAACAGATGGAACATATTATAGAATGTAAACAGAATCAATAAG  200

seq1  GAACAGAAACAGCCATACTTAAGAAATAAAATTTAACAAAACCAAATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAAACAGCCATACTTAAGAAATAAAATTTAACAAAACCAAATGAA  250

seq1  AAGAGACAAAGTAAATAAATAAATATAAAAGGGTCTACTATACCAAGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACAAAGTAAATAAATAAATATAAAAGGGTCTACTATACCAAGTAA  300

seq1  AAATATTTCTAAATGTAATTGCACCTCAAAGATCAACACCCAAACACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTCTAAATGTAATTGCACCTCAAAGATCAACACCCAAACACATA  350

seq1  AAGCAAAAAAACTAGTAATGCTAAGGAGAGAGTAACTTTGGTAAAATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAAAAACTAGTAATGCTAAGGAGAGAGTAACTTTGGTAAAATAAT  400

seq1  AACAGGAGACTTTAACATTCTACCTTTAATATATTCATCTTTATTTATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAGACTTTAACATTCTACCTTTAATATATTCATCTTTATTTATAT  450

seq1  ATATTTCATTATATAATATAAATAATGTTATATATTATATGATAATATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCATTATATAATATAAATAATGTTATATATTATATGATAATATTT  500

seq1  TATATACATTTACATGAAACAATATGATATTTAATAAATTTATTGATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATACATTTACATGAAACAATATGATATTTAATAAATTTATTGATTCA  550

seq1  CATAACTGTATACATTAATATATAAATTATATACATAAATTTCTAAGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAACTGTATACATTAATATATAAATTATATACATAAATTTCTAAGTTT  600

seq1  ATATGTTTATATTTAATAATATATGTGTTAATATAATTGATGTATATAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTATATTTAATAATATATGTGTTAATATAATTGATGTATATAAC  650

seq1  AAAATTTAAATACAGATATAATTAAAAGAAATATAAAATATTTATATAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAAATACAGATATAATTAAAAGAAATATAAAATATTTATATAAT  700

seq1  AATCACATAGATCATAGACCATATATATCATATTATACATATTTACTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACATAGATCATAGACCATATATATCATATTATACATATTTACTTTT  750

seq1  AATATATTTTATAATCATAGATGACATACTTAATGCATAATATAAAATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATATTTTATAATCATAGATGACATACTTAATGCATAATATAAAATAT  800

seq1  AAATAAGTATAGTAAAAATAATACGTAAAATATATTTAATTATTTATAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTATAGTAAAAATAATACGTAAAATATATTTAATTATTTATAAT  850

seq1  TTATGTTATATTTAACATAATATAATAAAATATATCATAATATCAGGAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTTATATTTAACATAATATAATAAAATATATCATAATATCAGGAAG  900

seq1  AAAATATAGTAAATTTGTACTCTGAGTTATATAAATGTAACAGATATGTG  950
      ||||||||||||||||||||| ||||||||||||||||||||||| ||||
seq2  AAAATATAGTAAATTTGTACTTTGAGTTATATAAATGTAACAGATTTGTG  950

seq1  CA-GACAG-TCTACTTTGCAAGTTCAGGATCTCCATTCTCCTCATCAGCA  998
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGTTCTACTTTGCAAGTTCAGGATCTCCATTCTCCTCATCAGCA  1000

seq1  TGTAAGATAATTTATAGAGTAATTATATGATGGGATGGCACAG-ATGTAA  1047
      |||||||| ||||||||||||| |||| ||||||||||||||| ||||||
seq2  TGTAAGAT-ATTTATAGAGTAA-TATAAGATGGGATGGCACAGAATGTAA  1048

seq1  ACTCCAACAAATTAAAAACTTAAAATCATATT-GATCAGATTTTGTAACT  1096
      |||||||| ||||||||  ||||| ||||||| ||||||  || || |||
seq2  ACTCCAAC-AATTAAAACTTTAAATTCATATTGGATCAGGATTGGT-ACT  1096

seq1  ATGACAAATAAAACTA-GTAGAAAAATAACAACAACAAAAGAAATATAAA  1145
      |||||||   |||||| ||||||||  | || ||||  ||| ||||||||
seq2  ATGACAA--TAAACTAGGTAGAAAATAACCACCAAC--AAGGAATATAAA  1142

seq1  ACAAAACACTGGAAACTGCATTAATGTATGAAAACTGGAAAAC  1188
      ||||||| |||||||||||||||||||||| ||||||| ||||
seq2  ACAAAAC-CTGGAAACTGCATTAATGTATGGAAACTGGGAAAC  1184

seq1: chr12_51486107_51487331
seq2: B6Ng01-101N14.g_71_1279 (reverse)

seq1  AAACCCACATTGAACCTACTCACCTCCATAAACAATTCCAAACTGTCCGG  50
      ||||||||||||| |   |||| |||    ||||  |||||   ||||||
seq2  AAACCCACATTGACCGATCTCA-CTC---TAACA--TCCAA--CGTCCGG  42

seq1  AACCCAGAACTTCATCAGGAAATATTTGATAGACTGTGCTGATATCCTAC  100
      || |||||   |  ||||||||||||||| || ||| ||||   || |||
seq2  AA-CCAGACTCTACTCAGGAAATATTTGA-AG-CTG-GCTGTATTCATAC  88

seq1  AGGTGCATACCCAGAGAAAGACAAAGAAGGGGAGGGGA-GACAAGCTTTA  149
      | |||||||||||| ||||||| ||||| ||||||||| |||||||||||
seq2  A-GTGCATACCCAG-GAAAGAC-AAGAA-GGGAGGGGAGGACAAGCTTTA  134

seq1  ATCCTATTACATTTTATAATTATAATTGCTATTAGCTGATTGAACAGAAA  199
      ||||| |||||||| |||||||||||||||| |||||||||| |||||||
seq2  ATCCT-TTACATTTAATAATTATAATTGCTA-TAGCTGATTG-ACAGAAA  181

seq1  TAT-AATTAAAC-ATTCCAAAG-CTCATTTAACACTTCTAAATGTCGGAT  246
      ||| |||||||| || |||||| |||||||||||||||||||||||||||
seq2  TATAAATTAAACAATCCCAAAGCCTCATTTAACACTTCTAAATGTCGGAT  231

seq1  AAAATTTCAATGGC-TATAATATTCAAATTACATTCCTATAATATTTTGA  295
      |||||||||||||| ||||||||||||||||||||||||||||| |||||
seq2  AAAATTTCAATGGCTTATAATATTCAAATTACATTCCTATAATA-TTTGA  280

seq1  AAACTATTCCGCTCTTAAGTACTTTGGATATGGGGCATTTTAATAGAGAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTATTCCGCTCTTAAGTACTTTGGATATGGGGCATTTTAATAGAGAG  330

seq1  AAGGGGGAATCTAAAACCAATCAATGGAATTTACTATAAATATCTGAGAA  395
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGAATCT-AAACCAATCAATGGAATTTACTATAAATATCTGAGAA  379

seq1  TGTATTCTATGTATTCTTATTTCTGCACCAGTAATTTAGAAATTTCATTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCTATGTATTCTTATTTCTGCACCAGTAATTTAGAAATTTCATTA  429

seq1  ACTATCCCATGGGCCCACATGTCTGTCACAATCCAGCTTTACCTTCAGGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCCATGGGCCCACATGTCTGTCACAATCCAGCTTTACCTTCAGGC  479

seq1  CAGAACCATGGGGCTACTCCTGCTTATTTCTCATTTCTACAAGAACCTAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACCATGGGGCTACTCCTGCTTATTTCTCATTTCTACAAGAACCTAA  529

seq1  GCTACACACAACTATTCCAGGAATCCCAGCTACTATATAAATAACCACAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACACAACTATTCCAGGAATCCCAGCTACTATATAAATAACCACAG  579

seq1  TATCGCCACTTGGGAAACTGTAATCGCTGGATAGAGAGTGAGCTAATCTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGCCACTTGGGAAACTGTAATCGCTGGATAGAGAGTGAGCTAATCTG  629

seq1  GGTTTCATATTGCATCTTTTTTACCAAAAGATTTCATGGAAACACTACAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCATATTGCATCTTTTTTACCAAAAGATTTCATGGAAACACTACAA  679

seq1  AGCTTTTATTTTTTATTTTCCTGGTACTGTGCATCCTAGTACATTTTCTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTATTTTTTATTTTCCTGGTACTGTGCATCCTAGTACATTTTCTG  729

seq1  CCTAGTTCGACTCTGCAAACCTTGATTTTTTTAAAAATCAGTTTTCAGCC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTCGACTCTGCAAACCTTGATTTTTTTAAAAATCAGTTTTCAGCC  779

seq1  ACATTCTCCCACCACTTTCCTTCTCTTCTCTTAGAAAGCAACTAGGAAGC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTCCCACCACTTTCCTTCTCTTCTCTTAGAAAGCAACTAGGAAGC  829

seq1  TTGTGTCTGTGATGCCTCTGGAGTATCAGAAAGTGAGTTCAAAACTCTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCTGTGATGCCTCTGGAGTATCAGAAAGTGAGTTCAAAACTCTCT  879

seq1  GGCAAGGAACATCATTAATCTGGTCCCTTTTTCCTGTAGCCACGCTAACC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGAACATCATTAATCTGGTCCCTTTTTCCTGTAGCCACGCTAACC  929

seq1  AACGGACTCCTCAGAATTTCTTGGAAAATTCATTTCAAAATTTTCAGTGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGACTCCTCAGAATTTCTTGGAAAATTCATTTCAAAATTTTCAGTGG  979

seq1  ACAATCAGGATAAAGGACTCTGAGGTCCCCTGGGAACTACCCAGGAAGCT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCAGGATAAAGGACTCTGAGGTCCCCTGGGAACTACCCAGGAAGCT  1029

seq1  TTCGAGTTGCCCGCTTTCTCCAAGGTCTCCTCTGTCTAAGCAAGGGCAGC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGTTGCCCGCTTTCTCCAAGGTCTCCTCTGTCTAAGCAAGGGCAGC  1079

seq1  AGAACCCTGCAGTCTTGAGGTCTGCATCTCAGGAGGTACAGTTCAAGCAT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCTGCAGTCTTGAGGTCTGCATCTCAGGAGGTACAGTTCAAGCAT  1129

seq1  CCATTTAACCTGCACTGTGAAGTGACCTCCTGTAATTCACCCTTGCCTTT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAACCTGCACTGTGAAGTGACCTCCTGTAATTCACCCTTGCCTTT  1179

seq1  GCTCAGTTTACACCAGGTCATCAAGAATTC  1225
      ||||||||||||||||||||||||||||||
seq2  GCTCAGTTTACACCAGGTCATCAAGAATTC  1209