BAC Information

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BAC

Clone NameB6Ng01-101O13
Chromosome12 (Build37)
Map Location 5,509,917 - 5,646,603
singlet/doubletdoublet
Overlap geneLOC435292
Upstream geneLOC100042014, Itsn2, 4930417G10Rik, A830093I24Rik, Pfn4, EG626534, 0610009D07Rik, Fkbp1b, BC068281, Gm1964, Ubxd4, Atad2b, LOC668332, Klhl29, 2810032G03Rik
Downstream geneLOC100042095, LOC672098, LOC100043137, LOC238049, LOC100042118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101O13.bB6Ng01-101O13.g
ACCDH910954DH910955
length1,1381,170
definitionDH910954|Mus musculus domesticus DNA, BAC clone: B6Ng01-101O13, 5' end.DH910955|Mus musculus domesticus DNA, BAC clone: B6Ng01-101O13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,645,455 - 5,646,603)(5,509,917 - 5,511,091)
sequence
gaattccttgtaacttgtcaatatgggcgtcgcggagctctgggagtggt
cttgtaggtgtgtgcaatcagagtccttgggagcagaattactgactctt
ccatctttgctcaatttgatgtaaaattagagtgtttaacacagtgtagg
tgttcaaactgcacacatatgattgttattgtttctataattttctttct
ataaacaagtgggagaaaaaaaatcaataccctcccagctatttcctggg
ccttcgaattcagtctttataagacagaaagtgggtgtgtccgtctgtga
agataattttcacctgataaacattttattgtcaatccttttgcaatctt
taactgaattgtttaaaatgcagcaaacccacagcaatcttggcaattaa
gttcattagataggagtaattacccaaagatagagacaatcagattgtat
gcattgataaagggtcataaaatgaggatgccttgtaaatccacttcaca
gctaaagtagggatgcctgctcctccttttccaaaatacttggtgtcatc
cttccacaggccaccaagctgatctcacatttccatctggttccaggatc
tctgctaccaactagcttgcacttttctagaatacagggatccacaaaag
acatcccagttcagatgccagtgactgctaaagaatgctgctctagcatg
cagatcgccccgggtttggtccccaagtaccacaacataaacgttataca
aataaaaaacttaccctggccttgtggtataggagtacactgcttgctgc
tggacatagaaaagcgagcctgtaatttcaggaggcaaaggcaagagggc
aacaagctcaacatcaggcttaggctactatagcagcccaagagactgat
gttccttgtcctacttccccagtaacttcttgccttctgtgggacatgaa
ggccagtgaggtaggctgctgaacaaagtccctttgctgtttcctgaaca
gctgagctcagcttgatgcattccagacctctgagacagagttcctgatg
tttccacttcttccttgtgtcctttaattctttccactctttcttccaat
gtccagctttgtggccattgatatgggttcattcatgg

gaattcattatttttgaattcaacttgcactgctacagctaaggttaatt
attgatttgttttattctgtgattaaagccattagctacgattagcacat
gatgatgtttatgcgtgcttgaatatcagcggccttgctttttatagcag
ggcccaggctaaatgattgctctatgggactgaaatctacaatgggggtt
cacagagtcactggaagtaaccagtggtttgtccttgtgatagaagaata
aacagaatctgattgcttccactaattattcttcttgagcagatactgac
cagaatttacctttaattaaatttggcctctgtcaccatctgattttgaa
tgaccagacttctgagcaggggatagagaatctgagagggctgctatctc
catggactgcagaccctgattttaaatgggaaatagaatgggcttttgct
ctttgaaatggttggaaatgcaactgaaagtccagagcttgtctttatca
gggcacaagtctgctgatgaatgcaagacattgcatctttacagcctctc
tgtgtaggtcataccttttctggcttctccctttctgggggaaggttggc
ctgaacctacctggcaccactgccattgggtttctggatgccaatgttca
gggagcacctcccacctccttctatctgtattctcaccggtcaggactta
tgtagacacaactgtatacagaagtaggaaatgtagcctgacagtcaagt
ctgacaaagggagaatcaatttggaaagtcatttggctagagtgggctgt
agtctcttttgctctttaaaagctgggtcaccatctcagcctgtcatttc
tttctatgttagaggaaccgccccatcccaagataaaaccctcctgaatg
gtcctcagttttctccagaaaccaccgagatgagagcttgaagagtagtg
acaagtccctatctcagtgccagataatctaacacagcggggcccatggt
aaacaatttgctgaaggatgactgttcaattggatgatttttggtggact
gaaagctccttacccttgctttgacattatttcttaaaaggccatccttt
taccctttcaagaccttctggatgtattctcagttttactttccccgcga
gagctgagctaattaagaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_5645455_5646603
seq2: B6Ng01-101O13.b_47_1184 (reverse)

seq1  CCATGAATGGGACACCCATATCAATGCCCACAAAGCCTGGGGACATTGGA  50
      |||||||||    ||||||||||||| |||||||||    ||||||||||
seq2  CCATGAATG---AACCCATATCAATGGCCACAAAGC---TGGACATTGGA  44

seq1  GGAAAGAGTGG-AAGAAATAAAGGACACAGAGGAAGAAGTGG-AACATCA  98
       |||||||||| ||||| ||||||||||| |||||||||||| |||||||
seq2  AGAAAGAGTGGAAAGAATTAAAGGACACA-AGGAAGAAGTGGAAACATCA  93

seq1  GGGAACTCTGTCTTCCAGAGGTCTGG-ATGCATCCAGCTGGAGCTCAGCT  147
       ||||||||||||  ||||||||||| ||||||| |||| ||||||||||
seq2  -GGAACTCTGTCT--CAGAGGTCTGGAATGCATCAAGCT-GAGCTCAGCT  139

seq1  GTTTCAGGAAAACTAGCAAAAGGGACTTTGTTCAGCAGCCTACCTCACTG  197
      | |||||||||   ||| ||||||||||||||||||||||||||||||||
seq2  G-TTCAGGAAA--CAGC-AAAGGGACTTTGTTCAGCAGCCTACCTCACTG  185

seq1  GCCCTCATGTCCCACAGAAGGCAGGAGGTTACTGGGGAAGTAGGACAAGG  247
      ||| ||||||||||||||||||| || |||||||||||||||||||||||
seq2  GCCTTCATGTCCCACAGAAGGCAAGAAGTTACTGGGGAAGTAGGACAAGG  235

seq1  AACATCAGTCTCTTGGGCTGCTATAGTAGCCT-AGCCTGATGTTGAGCTT  296
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  AACATCAGTCTCTTGGGCTGCTATAGTAGCCTAAGCCTGATGTTGAGCTT  285

seq1  GTTGCCCTCTTGCCTTTGCCTCCTGAAATTACAGGCTCGCTTTTCTATGT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCCTCTTGCCTTTGCCTCCTGAAATTACAGGCTCGCTTTTCTATGT  335

seq1  CCAGCAGCAAGCAGTGTACTCCTATACCACAAGGCCAGGGTAAGTTTTTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGCAAGCAGTGTACTCCTATACCACAAGGCCAGGGTAAGTTTTTT  385

seq1  ATTTGTATAACGTTTATGTTGTGGTACTTGGGGACCAAACCCGGGGCGAT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTATAACGTTTATGTTGTGGTACTTGGGGACCAAACCCGGGGCGAT  435

seq1  CTGCATGCTAGAGCAGCATTCTTTAGCAGTCACTGGCATCTGAACTGGGA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGCTAGAGCAGCATTCTTTAGCAGTCACTGGCATCTGAACTGGGA  485

seq1  TGTCTTTTGTGGATCCCTGTATTCTAGAAAAGTGCAAGCTAGTTGGTAGC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTTGTGGATCCCTGTATTCTAGAAAAGTGCAAGCTAGTTGGTAGC  535

seq1  AGAGATCCTGGAACCAGATGGAAATGTGAGATCAGCTTGGTGGCCTGTGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCCTGGAACCAGATGGAAATGTGAGATCAGCTTGGTGGCCTGTGG  585

seq1  AAGGATGACACCAAGTATTTTGGAAAAGGAGGAGCAGGCATCCCTACTTT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATGACACCAAGTATTTTGGAAAAGGAGGAGCAGGCATCCCTACTTT  635

seq1  AGCTGTGAAGTGGATTTACAAGGCATCCTCATTTTATGACCCTTTATCAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGAAGTGGATTTACAAGGCATCCTCATTTTATGACCCTTTATCAA  685

seq1  TGCATACAATCTGATTGTCTCTATCTTTGGGTAATTACTCCTATCTAATG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATACAATCTGATTGTCTCTATCTTTGGGTAATTACTCCTATCTAATG  735

seq1  AACTTAATTGCCAAGATTGCTGTGGGTTTGCTGCATTTTAAACAATTCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAATTGCCAAGATTGCTGTGGGTTTGCTGCATTTTAAACAATTCAG  785

seq1  TTAAAGATTGCAAAAGGATTGACAATAAAATGTTTATCAGGTGAAAATTA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATTGCAAAAGGATTGACAATAAAATGTTTATCAGGTGAAAATTA  835

seq1  TCTTCACAGACGGACACACCCACTTTCTGTCTTATAAAGACTGAATTCGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCACAGACGGACACACCCACTTTCTGTCTTATAAAGACTGAATTCGA  885

seq1  AGGCCCAGGAAATAGCTGGGAGGGTATTGATTTTTTTTCTCCCACTTGTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAGGAAATAGCTGGGAGGGTATTGATTTTTTTTCTCCCACTTGTT  935

seq1  TATAGAAAGAAAATTATAGAAACAATAACAATCATATGTGTGCAGTTTGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAAGAAAATTATAGAAACAATAACAATCATATGTGTGCAGTTTGA  985

seq1  ACACCTACACTGTGTTAAACACTCTAATTTTACATCAAATTGAGCAAAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTACACTGTGTTAAACACTCTAATTTTACATCAAATTGAGCAAAGA  1035

seq1  TGGAAGAGTCAGTAATTCTGCTCCCAAGGACTCTGATTGCACACACCTAC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGTCAGTAATTCTGCTCCCAAGGACTCTGATTGCACACACCTAC  1085

seq1  AAGACCACTCCCAGAGCTCCGCGACGCCCATATTGACAAGTTACAAGGAA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCACTCCCAGAGCTCCGCGACGCCCATATTGACAAGTTACAAGGAA  1135

seq1  TTC  1149
      |||
seq2  TTC  1138


seq1: chr12_5509917_5511091
seq2: B6Ng01-101O13.g_69_1238

seq1  GAATTCATTATTTTTGAATTCAACTTGCACTGCTACAGCTAAGGTTAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATTTTTGAATTCAACTTGCACTGCTACAGCTAAGGTTAATT  50

seq1  ATTGATTTGTTTTATTCTGTGATTAAAGCCATTAGCTACGATTAGCACAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTTGTTTTATTCTGTGATTAAAGCCATTAGCTACGATTAGCACAT  100

seq1  GATGATGTTTATGCGTGCTTGAATATCAGCGGCCTTGCTTTTTATAGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATGTTTATGCGTGCTTGAATATCAGCGGCCTTGCTTTTTATAGCAG  150

seq1  GGCCCAGGCTAAATGATTGCTCTATGGGACTGAAATCTACAATGGGGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAGGCTAAATGATTGCTCTATGGGACTGAAATCTACAATGGGGGTT  200

seq1  CACAGAGTCACTGGAAGTAACCAGTGGTTTGTCCTTGTGATAGAAGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGTCACTGGAAGTAACCAGTGGTTTGTCCTTGTGATAGAAGAATA  250

seq1  AACAGAATCTGATTGCTTCCACTAATTATTCTTCTTGAGCAGATACTGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATCTGATTGCTTCCACTAATTATTCTTCTTGAGCAGATACTGAC  300

seq1  CAGAATTTACCTTTAATTAAATTTGGCCTCTGTCACCATCTGATTTTGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATTTACCTTTAATTAAATTTGGCCTCTGTCACCATCTGATTTTGAA  350

seq1  TGACCAGACTTCTGAGCAGGGGATAGAGAATCTGAGAGGGCTGCTATCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGACTTCTGAGCAGGGGATAGAGAATCTGAGAGGGCTGCTATCTC  400

seq1  CATGGACTGCAGACCCTGATTTTAAATGGGAAATAGAATGGGCTTTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGACTGCAGACCCTGATTTTAAATGGGAAATAGAATGGGCTTTTGCT  450

seq1  CTTTGAAATGGTTGGAAATGCAACTGAAAGTCCAGAGCTTGTCTTTATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAATGGTTGGAAATGCAACTGAAAGTCCAGAGCTTGTCTTTATCA  500

seq1  GGGCACAAGTCTGCTGATGAATGCAAGACATTGCATCTTTACAGCCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACAAGTCTGCTGATGAATGCAAGACATTGCATCTTTACAGCCTCTC  550

seq1  TGTGTAGGTCATACCTTTTCTGGCTTCTCCCTTTCTGGGGGAAGGTTGGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGGTCATACCTTTTCTGGCTTCTCCCTTTCTGGGGGAAGGTTGGC  600

seq1  CTGAACCTACCTGGCACCACTGCCATTGGGTTTCTGGATGCCAATGTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACCTACCTGGCACCACTGCCATTGGGTTTCTGGATGCCAATGTTCA  650

seq1  GGGAGCACCTCCCACCTCCTTCTATCTGTATTCTCACCGGTCAGGACTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCACCTCCCACCTCCTTCTATCTGTATTCTCACCGGTCAGGACTTA  700

seq1  TGTAGACACAACTGTATACAGAAGTAGGAAATGTAGCCTGACAGCCAAGT  750
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGTAGACACAACTGTATACAGAAGTAGGAAATGTAGCCTGACAGTCAAGT  750

seq1  CTGACAAAGGGAGAATCAATTTGGAAAGTCATTTGGCTAGAGTGGGCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACAAAGGGAGAATCAATTTGGAAAGTCATTTGGCTAGAGTGGGCTGT  800

seq1  AGTCTCTTTTGCTCTTTAAAAGCTGGGTCACCATCTCAGCCTGTCATTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTTTTGCTCTTTAAAAGCTGGGTCACCATCTCAGCCTGTCATTTC  850

seq1  TTTCTATGTTAGAGGAACCGCCCCATCCCAAGAT-AAACCCTCCTGAATG  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTTCTATGTTAGAGGAACCGCCCCATCCCAAGATAAAACCCTCCTGAATG  900

seq1  GTCCTCAGTTTTCTCCAGAAACCACCGAGATGAGAGCTTG-AGAGTAGTG  948
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  GTCCTCAGTTTTCTCCAGAAACCACCGAGATGAGAGCTTGAAGAGTAGTG  950

seq1  ACAAGTCCCTATCTCAGTGCCAGCAGATCTAACACAGCGGGGCCCATGGT  998
      |||||||||||||||||||||||   ||||||||||||||||||||||||
seq2  ACAAGTCCCTATCTCAGTGCCAGATAATCTAACACAGCGGGGCCCATGGT  1000

seq1  AAAC-ATTTGCTGAGTGAATGACTGTCCAATTGAATGATTTTTGGTGAAC  1047
      |||| |||||||||  | |||||||| |||||| ||||||||||||| ||
seq2  AAACAATTTGCTGA-AGGATGACTGTTCAATTGGATGATTTTTGGTGGAC  1049

seq1  TGAAGGCTCCTGTCACCTGGCTTTGACATATATTCCTTTTAGAAGGCTCA  1097
      |||| |||||| |  ||| |||||||||| ||||  | ||| ||||| ||
seq2  TGAAAGCTCCT-TACCCTTGCTTTGACAT-TATT--TCTTAAAAGGC-CA  1094

seq1  TCTCTTTACCCTTTTCACAAG-CCTTCCTGATGGTTATCTACAGTTCATC  1146
      ||  ||||||||||   |||| |||||  ||||  |||   |||||   |
seq2  TCCTTTTACCCTTT---CAAGACCTTCTGGATG--TATTCTCAGTTTTAC  1139

seq1  TTTCCCCGCGAGA-CGGTTC-AATTAAGACA  1175
      ||||||||||||| | |  | ||||||||||
seq2  TTTCCCCGCGAGAGCTGAGCTAATTAAGACA  1170


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