BAC Information

Click to search

BAC

Clone NameB6Ng01-102L10
Chromosome12 (Build37)
Map Location 105,353,449 - 105,531,111
singlet/doubletdoublet
Overlap geneSerpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900
Upstream gene9030205A07Rik, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951, LOC628801, Serpina1a, LOC667954, Serpina1c, Serpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5
Downstream geneEG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc, Dicer1, Clmn, 4831426I19Rik, Snhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102L10.bB6Ng01-102L10.g
ACCDH911525DH911526
length9181,188
definitionDH911525|Mus musculus domesticus DNA, BAC clone: B6Ng01-102L10, 5' end.DH911526|Mus musculus domesticus DNA, BAC clone: B6Ng01-102L10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,530,189 - 105,531,111)(105,353,449 - 105,354,650)
sequence
gaattcatggtggctccaagttcctttctttagttggaaacagtctgatc
tagtcccatgcaattggactccatttttatgcatcattcccaggttctag
atgccaaagactagacacagcagtgagtaaagcattagctcttgaatggc
aggcacacattgtgcaaaaccctgataaggcagaaaaaacttttgttttc
tcttcctctctgttatgctcctttctggatataaaacatcactagcagtt
agtacaagctatgggcttcatggaggggaagttacttgttgacaaaaaaa
tgggaggattacattctgctactgaaacagtggtagtcagagtagacctc
ttccttattggtagtgtatgtttttattatttcctctcaaaagaataatg
gcatttcatgtgatcccagaaaacaacaaacaccacacatctatgaagaa
cataaatgtatctgagtgtcacagcttatatccttaataaaaagacagtc
ctcccttctggtcggcaccagcactgggtcaccttgggtgtggagtcggc
agacacccccaagaaccccataagactctccatgggatctcaggacctct
ggcgagtggaacacaacttctgctccaatccaatcgcccaggacctgaga
gcattaaattagggaagcagaaaaacccggcctgaccagggtcacaagtc
ccttgcggtcagcccaaccttgcggttgggtcaccttggggcacggagtc
gacagacacccccaaggtccctagaagtgaaagatctgtatgataagaac
ttcaagtttctgaggtagaaattaaagaagatctcagaagatggaagatc
tccctgttcacggatggcaggatcatatattaaaatgggtatcttgtcaa
agcaatctacagatcaat
gaattctggtacaggtatcagagacaccaacaacgtttgttattggacct
atcaggaggccttccaagcctgaggccatgtggtactatggcagggttga
aaggtgctctccctattcgtctttataatagctgttctcaggggtggcag
ggctttggcactgagccagatgtctccagtgttttctcttaagtaatctc
catactcctagaaacattcactagattcagcccggtgcattgagatttct
tatatatgatttctggatgtatgactaagtcatagccttcaaaatttgtc
catggtttcttccttcagtctggactggagcttgctaataggagagggcc
caagtgcagaggaagagggctcctgcattttaatgggaatccagaaaatg
agaagagacattaagattacacatgtcttgtgcccagctctgagtttttc
tctccctttatctgtgaggctggaatgatctgtcttctttatgaatgctg
gttctcttaaatagaaaaattggcttctgcaatagcacttcctccatggt
aggagggagctcctgatggagtacggcatctgagagatcagagagcctac
catacaggcaggaagagcaacagagcaggacacaatgccagccagatggg
agacctaggagatagtcagacgaccggctggtcctcccagactcaaagga
tgttttcccttcagcctggagaacagagatgatggcctttcattgcagct
ctggggctcctgatggcgggaatctgtcctgctatcacctactgggcaac
tgcagatgggcaactgggaaaggcacactgaagtccagaaagacagagac
catgaaatacaactggacagtgtcacactggcttccatcaacactgactt
gccttcagcctctacaagaagcttgctttgaagaatcacataaaaatatt
gtcttctcccacttagcatctcagctgccttggccctcatgtcctgggag
caaaggacaacaccttggaagaagttctagaagtctcaagttcaatctca
cagaaaactccagaagcagactccacagaactttgggcacctctacaatg
ctcattcagcgaagacaggtccaatcatgtctggcacgccctgtttattg
taagaccttgcgaatcttgacaggtttcaaggaaggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_105530189_105531111
seq2: B6Ng01-102L10.b_45_962 (reverse)

seq1  ATTGAATCTGTAGATTGCTTTTGGCAAGATACCCATTTTTACTATATTGA  50
      |||| ||||||||||||| |||| ||||||||||| ||||| |||| |||
seq2  ATTG-ATCTGTAGATTGC-TTTGACAAGATACCCA-TTTTAATATA-TGA  46

seq1  TCCTGCCAATCCGTGAACATGGGAGATCTTTCCATCTTCTGAGATCTTCT  100
      ||||||| ||||||||||| |||||||| |||||||||||||||||||||
seq2  TCCTGCC-ATCCGTGAACA-GGGAGATC-TTCCATCTTCTGAGATCTTCT  93

seq1  TTAATTTCTTTCTTCAGAGACTTGAAGTTCTTATCATACAGATCTTTCAC  150
      |||||||| | | ||||| |||||||||||||||||||||||||||||||
seq2  TTAATTTC-TACCTCAGAAACTTGAAGTTCTTATCATACAGATCTTTCAC  142

seq1  TTCTAGGGACCTTGGGGGTGTCTGTCGACTCCGTG-CCCAAGGTGACCCA  199
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTCTAGGGACCTTGGGGGTGTCTGTCGACTCCGTGCCCCAAGGTGACCCA  192

seq1  ACCGCAAGGTTGGGCTGACCGCAAGGGACTTGTGACCCTGGTCAGGCCGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCAAGGTTGGGCTGACCGCAAGGGACTTGTGACCCTGGTCAGGCCGG  242

seq1  G-TTTTCTGCTTCCCTAA-TTAATGCTCTCAGGTCCTGGGCGATTGGATT  297
      | |||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTTTTTCTGCTTCCCTAATTTAATGCTCTCAGGTCCTGGGCGATTGGATT  292

seq1  GGAGCAGAAGTTGTGTTCCACTCGCCAGAGGTCCTGAGATCCCATGGAGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCAGAAGTTGTGTTCCACTCGCCAGAGGTCCTGAGATCCCATGGAGA  342

seq1  GTCTTATGGGGTTCTTGGGGGTGTCTGCCGACTCCACACCCAAGGTGACC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTATGGGGTTCTTGGGGGTGTCTGCCGACTCCACACCCAAGGTGACC  392

seq1  CAGTGCTGGTGCCGACCAGAAGGGAGGACTGTCTTTTTATTAAGGATATA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGGTGCCGACCAGAAGGGAGGACTGTCTTTTTATTAAGGATATA  442

seq1  AGCTGTGACACTCAGATACATTTATGTTCTTCATAGATGTGTGGTGTTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGACACTCAGATACATTTATGTTCTTCATAGATGTGTGGTGTTTG  492

seq1  TTGTTTTCTGGGATCACATGAAATGCCATTATTCTTTTGAGAGGAAATAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCTGGGATCACATGAAATGCCATTATTCTTTTGAGAGGAAATAA  542

seq1  TAAAAACATACACTACCAATAAGGAAGAGGTCTACTCTGACTACCACTGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACATACACTACCAATAAGGAAGAGGTCTACTCTGACTACCACTGT  592

seq1  TTCAGTAGCAGAATGTAATCCTCCCATTTTTTTGTCAACAAGTAACTTCC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTAGCAGAATGTAATCCTCCCATTTTTTTGTCAACAAGTAACTTCC  642

seq1  CCTCCATGAAGCCCATAGCTTGTACTAACTGCTAGTGATGTTTTATATCC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGAAGCCCATAGCTTGTACTAACTGCTAGTGATGTTTTATATCC  692

seq1  AGAAAGGAGCATAACAGAGAGGAAGAGAAAACAAAAGTTTTTTCTGCCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAGCATAACAGAGAGGAAGAGAAAACAAAAGTTTTTTCTGCCTT  742

seq1  ATCAGGGTTTTGCACAATGTGTGCCTGCCATTCAAGAGCTAATGCTTTAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGGTTTTGCACAATGTGTGCCTGCCATTCAAGAGCTAATGCTTTAC  792

seq1  TCACTGCTGTGTCTAGTCTTTGGCATCTAGAACCTGGGAATGATGCATAA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCTGTGTCTAGTCTTTGGCATCTAGAACCTGGGAATGATGCATAA  842

seq1  AAATGGAGTCCAATTGCATGGGACTAGATCAGACTGTTTCCAACTAAAGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGAGTCCAATTGCATGGGACTAGATCAGACTGTTTCCAACTAAAGA  892

seq1  AAGGAACTTGGAGCCACCATGAATTC  923
      ||||||||||||||||||||||||||
seq2  AAGGAACTTGGAGCCACCATGAATTC  918

seq1: chr12_105353449_105354650
seq2: B6Ng01-102L10.g_70_1257

seq1  GAATTCTGGTACAGGTATCAGAGACACCAACAACGTTTGTTATTGGACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTACAGGTATCAGAGACACCAACAACGTTTGTTATTGGACCT  50

seq1  ATCAGGAGGCCTTCCAAGCCTGAGGCCATGTGGTACTATGGCAGGGTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGAGGCCTTCCAAGCCTGAGGCCATGTGGTACTATGGCAGGGTTGA  100

seq1  AAGGTGCTCTCCCTATTCGTCTTTATAATAGCTGTTCTCAGGGGTGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGCTCTCCCTATTCGTCTTTATAATAGCTGTTCTCAGGGGTGGCAG  150

seq1  GGCTTTGGCACTGAGCCAGATGTCTCCAGTGTTTTCTCTTAAGTAATCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGGCACTGAGCCAGATGTCTCCAGTGTTTTCTCTTAAGTAATCTC  200

seq1  CATACTCCTAGAAACATTCACTAGATTCAGCCCGGTGCATTGAGATTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTCCTAGAAACATTCACTAGATTCAGCCCGGTGCATTGAGATTTCT  250

seq1  TATATATGATTTCTGGATGTATGACTAAGTCATAGCCTTCAAAATTTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGATTTCTGGATGTATGACTAAGTCATAGCCTTCAAAATTTGTC  300

seq1  CATGGTTTCTTCCTTCAGTCTGGACTGGAGCTTGCTAATAGGAGAGGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTTTCTTCCTTCAGTCTGGACTGGAGCTTGCTAATAGGAGAGGGCC  350

seq1  CAAGTGCAGAGGAAGAGGGCTCCTGCATTTTAATGGGAATCCAGAAAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCAGAGGAAGAGGGCTCCTGCATTTTAATGGGAATCCAGAAAATG  400

seq1  AGAAGAGACATTAAGATTACACATGTCTTGTGCCCAGCTCTGAGTTTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGACATTAAGATTACACATGTCTTGTGCCCAGCTCTGAGTTTTTC  450

seq1  TCTCCCTTTATCTGTGAGGCTGGAATGATCTGTCTTCTTTATGAATGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTTTATCTGTGAGGCTGGAATGATCTGTCTTCTTTATGAATGCTG  500

seq1  GTTCTCTTAAATAGAAAAATTGGCTTCTGCAATAGCACTTCCTCCATGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTAAATAGAAAAATTGGCTTCTGCAATAGCACTTCCTCCATGGT  550

seq1  AGGAGGGAGCTCCTGATGGAGTACGGCATCTGAGAGATCAGAGAGCCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGGAGCTCCTGATGGAGTACGGCATCTGAGAGATCAGAGAGCCTAC  600

seq1  CATACAGGCAGGAAGAGCAACAGAGCAGGACACAATGCCAGCCAGATGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAGGCAGGAAGAGCAACAGAGCAGGACACAATGCCAGCCAGATGGG  650

seq1  AGACCTAGGAGATAGTCAGACGACCGGCTGGTCCTCCCAGACTCAAAGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTAGGAGATAGTCAGACGACCGGCTGGTCCTCCCAGACTCAAAGGA  700

seq1  TGTTTTCCCTTCAGCCTGGAGAACAGAGATGATGGCC-TTCATTGCAGCT  749
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTTTTCCCTTCAGCCTGGAGAACAGAGATGATGGCCTTTCATTGCAGCT  750

seq1  CTGGGGCTCCTGATGGCGGGAATCTGTCCTGCTATCACCTACTGGGCAAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCTCCTGATGGCGGGAATCTGTCCTGCTATCACCTACTGGGCAAC  800

seq1  TGCAGATGGGCAACTGGG-AAGGCACACTGAAGTCCAGAAAGACAGAGAC  848
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TGCAGATGGGCAACTGGGAAAGGCACACTGAAGTCCAGAAAGACAGAGAC  850

seq1  CATGAAATACAACTGGACAGTGTCACACTGGCTTCCATCAACACTGACTT  898
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  CATGAAATACAACTGGACAGTGTCACACTGGCTTCCATCAACACTGAC-T  899

seq1  TGCCTTCAGCCTCTACAAGAAGCTTGCTTTGAAGAATCCACATAAAAATA  948
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGCCTTCAGCCTCTACAAGAAGCTTGCTTTGAAGAAT-CACATAAAAATA  948

seq1  TTGTCTTCTCCCCACTTAGCATCTCAGCTGCCTTGGCCCTCATGTCCCTG  998
      ||||||||| ||||||||||||||||||||||||||||||||||| ||||
seq2  TTGTCTTCT-CCCACTTAGCATCTCAGCTGCCTTGGCCCTCATGT-CCTG  996

seq1  GGAGCAAAGGACAACACCCTGGAAGAGATTCTAGAAGGTCTCAAGTTCAA  1048
      |||||||||||||||||| |||||||  |||||||| |||||||||||||
seq2  GGAGCAAAGGACAACACCTTGGAAGAAGTTCTAGAA-GTCTCAAGTTCAA  1045

seq1  TCTCACAG-AGACCCCAGAAGCAGACATCCACCAGAACTTTGGGCACCTC  1097
      |||||||| | || |||||||||||| |||| ||||||||||||||||| 
seq2  TCTCACAGAAAACTCCAGAAGCAGAC-TCCA-CAGAACTTTGGGCACCT-  1092

seq1  CTACAAATGCTCATTCAGCCAGAGAACCAGGTTCAGATCAATGCTGGCAA  1147
      |||| |||||||||||||| | |||  ||||| || ||||   ||||| |
seq2  CTAC-AATGCTCATTCAGCGA-AGA--CAGGTCCA-ATCATGTCTGGC-A  1136

seq1  CGCCCTGTTTATTGATAAGCACCTGCAGATCTTGACAGAGTTCAAGGAGA  1197
      |||||||||||||| ||||  | |||  ||||||||||  ||||||  ||
seq2  CGCCCTGTTTATTG-TAAGACCTTGCGAATCTTGACAGGTTTCAAG--GA  1183

seq1  AGGCA  1202
      |||||
seq2  AGGCA  1188