BAC Information

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BAC

Clone NameB6Ng01-102M03
Chromosome12 (Build37)
Map Location 62,899,720 - 63,013,515
singlet/doubletdoublet
Overlap geneLrfn5, LOC665707
Upstream geneLOC100040300, LOC665677, Nanog-ps2, LOC665699
Downstream geneLOC100040403, LOC665713, LOC622746, LOC100040438, 1700047L15Rik, Tspyl-ps, EG665741
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102M03.bB6Ng01-102M03.g
ACCDH911559DH911560
length1,140311
definitionDH911559|Mus musculus domesticus DNA, BAC clone: B6Ng01-102M03, 5' end.DH911560|Mus musculus domesticus DNA, BAC clone: B6Ng01-102M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(63,012,361 - 63,013,515)(62,899,720 - 62,900,030)
sequence
gaattcagcagccagcaggcagtttacaaacaataggaagaaggccatgt
agaagcagaactagaaaagataaaagagctgattgatcaacaggaattcc
atacagtgcagttttacagtagagaatgagagagtggtctgggccacatg
tcagcagatgcttgaggagtcttggcagaactccaagagttatttgaaat
ctgtttgatattcagtgatatctgaacagcctccagcaggcaatggtttg
tggatcactacagtggtaaagaggagttagagctagagactggtaacata
taaaaggttgatcgccttacaaactgtcagaaggttttactactacacta
taagtgaaagatatcaagggtctaagcctagatttgtctagaaagatgaa
aaaaaggaaattgagatttaagtggtcttatatgatcaggatgaagttat
tgaagtaacaaacataatcataaagtaagatgtcatatgtactaaatggt
gagacatttgtataaattaacagaatcctaacaaacagaccaaataatat
ttttggtgtaagagaaaatacaattctagcatatgaatttgaagatcctt
ggaattctggattaatcatgagctgtgtattggattcagagtatttctat
aagtagtatttcttactttggtttttgaatataaaaagaggtctagaaga
gaataagaaaagaaagatctccagataatataaacttttacagtagttca
aagttgactatgctgtggtttagtaataacttgatgaacaagacagggag
caggaggaatttttaaaccactcccagagaccatgccaacttaatgaaat
gtaatctttaaatataatcctagactgaagcactatggccagatgagaaa
cattgtttttatacagattctagtttaccctagaattcacataagcaagt
tattgtagatttagtcatatggtttctatgttttatttaaggtgtatggg
ggaattttgtgggaaatcattcgaacactttttcattctagtttagaaat
taagaataagaaaataaaaaggtaccttgcctttcttaaagattatgagg
cagaatgagatgtctcggttcctgactccattgtcatttt
attctggcttttgttgctttgaccaaagatgctaaaaaaaaaactagcgc
attgttatttttctataaatgctcaaagatttatatagaaactttcttta
aattgattgctccttacaaaaattgaagcaggagcaccaattgcatttgt
cttgataagatttttaataggttcctctatacatttttagtgtactcttt
ttaccagagggttctttattaactgtgggcttcattaggttagagacctc
gctttagatataaccaagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_63012361_63013515
seq2: B6Ng01-102M03.b_44_1183 (reverse)

seq1  AAAATGACAATGAAGGTCAGGGGACCCAGAGCAACTCAACTCTGCCTCAT  50
      |||||||||||| | |||| || ||| ||| || ||| | ||||||||||
seq2  AAAATGACAATGGA-GTCA-GGAACCGAGA-CATCTC-ATTCTGCCTCAT  46

seq1  AAATCTTTTAAGAAAAGCAAAGGTACCTTTTTATTTTCTTATTCTTAAAT  100
       |||| ||||||||| || ||||||||||||||||||||||||||| |||
seq2  -AATC-TTTAAGAAAGGC-AAGGTACCTTTTTATTTTCTTATTCTT-AAT  92

seq1  TTCTAAAACTAGATTTGAAAAAGGTGTTCGAATGATTT-CCACAAAATTC  149
      |||| ||||||||  ||||||| ||||||||||||||| |||||||||||
seq2  TTCT-AAACTAGA-ATGAAAAA-GTGTTCGAATGATTTCCCACAAAATTC  139

seq1  CCCCAATATCAACCTTAAAATAAAACATAGAAACCATATGACTAAATCTA  199
      ||||   ||  ||||| |||||||||||||||||||||||||||||||| 
seq2  CCCC---ATACACCTT-AAATAAAACATAGAAACCATATGACTAAATCT-  184

seq1  ACAATAACTTGCTTATGTGAATTCTAGGGTAAACTAGAATCTGTATAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAACTTGCTTATGTGAATTCTAGGGTAAACTAGAATCTGTATAAAA  234

seq1  ACAATGTTTCTCATCTGGCCATAGTGCTTCAGTCTAGGATTATATTTAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTTTCTCATCTGGCCATAGTGCTTCAGTCTAGGATTATATTTAAA  284

seq1  GATTACATTTCATTAAGTTGGCATGGTCTCTGGGAGTGGTTTAAAAATTC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTACATTTCATTAAGTTGGCATGGTCTCTGGGAGTGGTTTAAAAATTC  334

seq1  CTCCTGCTCCCTGTCTTGTTCATCAAGTTATTACTAAACCACAGCATAGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTCCCTGTCTTGTTCATCAAGTTATTACTAAACCACAGCATAGT  384

seq1  CAACTTTGAACTACTGTAAAAGTTTATATTATCTGGAGATCTTTCTTTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTGAACTACTGTAAAAGTTTATATTATCTGGAGATCTTTCTTTTC  434

seq1  TTATTCTCTTCTAGACCTCTTTTTATATTCAAAAACCAAAGTAAGAAATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTCTTCTAGACCTCTTTTTATATTCAAAAACCAAAGTAAGAAATA  484

seq1  CTACTTATAGAAATACTCTGAATCCAATACACAGCTCATGATTAATCCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTATAGAAATACTCTGAATCCAATACACAGCTCATGATTAATCCAG  534

seq1  AATTCCAAGGATCTTCAAATTCATATGCTAGAATTGTATTTTCTCTTACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAAGGATCTTCAAATTCATATGCTAGAATTGTATTTTCTCTTACA  584

seq1  CCAAAAATATTATTTGGTCTGTTTGTTAGGATTCTGTTAATTTATACAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAATATTATTTGGTCTGTTTGTTAGGATTCTGTTAATTTATACAAA  634

seq1  TGTCTCACCATTTAGTACATATGACATCTTACTTTATGATTATGTTTGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCACCATTTAGTACATATGACATCTTACTTTATGATTATGTTTGTT  684

seq1  ACTTCAATAACTTCATCCTGATCATATAAGACCACTTAAATCTCAATTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAATAACTTCATCCTGATCATATAAGACCACTTAAATCTCAATTTC  734

seq1  CTTTTTTTCATCTTTCTAGACAAATCTAGGCTTAGACCCTTGATATCTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTCATCTTTCTAGACAAATCTAGGCTTAGACCCTTGATATCTTT  784

seq1  CACTTATAGTGTAGTAGTAAAACCTTCTGACAGTTTGTAAGGCGATCAAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTATAGTGTAGTAGTAAAACCTTCTGACAGTTTGTAAGGCGATCAAC  834

seq1  CTTTTATATGTTACCAGTCTCTAGCTCTAACTCCTCTTTACCACTGTAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATATGTTACCAGTCTCTAGCTCTAACTCCTCTTTACCACTGTAGT  884

seq1  GATCCACAAACCATTGCCTGCTGGAGGCTGTTCAGATATCACTGAATATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCACAAACCATTGCCTGCTGGAGGCTGTTCAGATATCACTGAATATC  934

seq1  AAACAGATTTCAAATAACTCTTGGAGTTCTGCCAAGACTCCTCAAGCATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGATTTCAAATAACTCTTGGAGTTCTGCCAAGACTCCTCAAGCATC  984

seq1  TGCTGACATGTGGCCCAGACCACTCTCTCATTCTCTACTGTAAAACTGCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGACATGTGGCCCAGACCACTCTCTCATTCTCTACTGTAAAACTGCA  1034

seq1  CTGTATGGAATTCCTGTTGATCAATCAGCTCTTTTATCTTTTCTAGTTCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATGGAATTCCTGTTGATCAATCAGCTCTTTTATCTTTTCTAGTTCT  1084

seq1  GCTTCTACATGGCCTTCTTCCTATTGTTTGTAAACTGCCTGCTGGCTGCT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTACATGGCCTTCTTCCTATTGTTTGTAAACTGCCTGCTGGCTGCT  1134

seq1  GAATTC  1155
      ||||||
seq2  GAATTC  1140

seq1: chr12_62899720_62900030
seq2: B6Ng01-102M03.g_71_381

seq1  ATTCTGGCTTTTGTTGCTTTGACCAAAGATGCTAAAAAAAAAACTAGCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGCTTTTGTTGCTTTGACCAAAGATGCTAAAAAAAAAACTAGCGC  50

seq1  ATTGTTATTTTTCTATAAATGCTCAAAGATTTATATAGAAACTTTCTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTATTTTTCTATAAATGCTCAAAGATTTATATAGAAACTTTCTTTA  100

seq1  AATTGATTGCTCCTTACAAAAATTGAAGCAGGAGCACCAATTGCATTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATTGCTCCTTACAAAAATTGAAGCAGGAGCACCAATTGCATTTGT  150

seq1  CTTGATAAGATTTTTAATAGGTTCCTCTATACATTTTTAGTGTACTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATAAGATTTTTAATAGGTTCCTCTATACATTTTTAGTGTACTCTTT  200

seq1  TTACCAGAGGGTTCTTTATTAACTGTGGGCTTCATTAGGTTAGAGACCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAGAGGGTTCTTTATTAACTGTGGGCTTCATTAGGTTAGAGACCTC  250

seq1  GCTTTAGATATAACCAAGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTAGATATAACCAAGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT  300

seq1  GTGTGTGTGTG  311
      |||||||||||
seq2  GTGTGTGTGTG  311