BAC Information

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BAC

Clone NameB6Ng01-102O03
Chromosome8 (Build37)12 (Build37)
Map Location 45,278,677 - 45,279,90332,631,616 - 32,631,845
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneEG622117, LOC100039417, Zfp42, Adam26b, Adam26a, EG384813, Adam34, EG384814, LOC100039472, LOC547011, LOC622263
Downstream geneLOC100039508, Fat1, LOC100039673, Mtnr1a, EG622523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-102O03.bB6Ng01-102O03.g
ACCDH911643DH911644
length1,191570
definitionDH911643|Mus musculus domesticus DNA, BAC clone: B6Ng01-102O03, 5' end.DH911644|Mus musculus domesticus DNA, BAC clone: B6Ng01-102O03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(45,278,677 - 45,279,903)(32,631,616 - 32,631,845)
sequence
gaattcttagtctgagcttccttctcagttgcaattgggcatatttactg
tacttctcccaaagactttacatattaaattattttatatagaagaatgc
atacacaagagtggtggtagttgccaataggaaacaaatttcaagaatta
tttaccttcataggaaaatatatccagaggtaatttcattcagctgagat
agaacttcagaagaaagggttataccattaattcatgaggttgatagaaa
acttggactagaagttttgggtactcactagagagtcacttagaggagaa
atgaagaaggtgtaaaagataaaggtagcctaaggtaacaatgaaatgtc
agatgccatacagttgaataaaagaaacaaattatccattaaggaaataa
aaatatctttttaagtatgaagttcttaagatagaaccaatcaaactctt
agaaatgagctgtagttgttgagacttggcaaacccactaagttacaaaa
cagtactcattgcacatcttaaagaatcatattggtaatcattcttaaca
atcatagaaacacacaaaacatttgtagaagaatttattgtttattggta
gaaatagattcttcttctataaaatatatcttcaccacagtctccctctt
cattcatccctcccagctccactcgccacctttcctctcctgggatctat
tctccctctttagaaaagaatagatctccaagagacaacaataaaacatg
acaaaaaacaaaatacagtaagagaaggtagaagctctcacattgaaggt
cagcaagacaacagagcagaggaagagtcccaggaccaggcataaaagtc
agagacatagcaactcccactcttaggagtcaccccccccccaaaaaaaa
atatataaagctaacagctaatagctgttgaaagcaaacctttgggatct
attctagaagctctttgcatattgtacatactggtgataagtaagagata
tcaatgataaaacagagtatatcatcttgtaaacttggaggatataaaag
acaaggactgggagggaggacatagacccaaaatgtttcgagtgtcatct
agataaattaaggtctggtgaccaacgaacatagccaaccttctgttctg
ggagttcctgtatacagacaagagagagctcctagagcaga
gaattctcctgtgaaagactctctcttagaaatgacctcaacatagtggg
gcatgtgtccttattaccagttggaacatcttgtggtcactttgcccctt
catagaattgggaacaaaacacccatggaaggagttacagagacaaagtt
tggagctgagacgaaaggatggaccatctagagactgccgcacctgggga
tccatcccattatcagcctccaaacacagacaacattgcatacgccagca
agattttgctgaaaagaccctgatataactgtctcttgtgagattagcaa
acacagaagtggatgctcacagtcagctattggatggaacacagggcccc
caatggaggaactagagaaagtacccaaggagctaaagggatctgcaacc
ctataggtggaacaacaatatgaactaaccagtacccctagagctcgtgt
ctctagctgcatgtgtagcagaagatggcctattcggccatcattgggaa
gaaaggccccttggtcatacaaactttatatgcctcagtacaggggaaca
ccagggccaagaagtgggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_45278677_45279903
seq2: B6Ng01-102O03.b_45_1235

seq1  GAATTCTTAGTCTGAGCTTCCTTCTCAGTTGCAATTGGGCATATTTACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGTCTGAGCTTCCTTCTCAGTTGCAATTGGGCATATTTACTG  50

seq1  TACTTCTCCCAAAGACTTTACATATTAAATTATTTTATATAGAAGAATGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTCCCAAAGACTTTACATATTAAATTATTTTATATAGAAGAATGC  100

seq1  ATACACAAGAGTGGTGGTAGTTGCCAATAGGAAACAAATTTCAAGAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAAGAGTGGTGGTAGTTGCCAATAGGAAACAAATTTCAAGAATTA  150

seq1  TTTACCTTCATAGGAAAATATATCCAGAGGTAATTTCATTCAGCTGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTTCATAGGAAAATATATCCAGAGGTAATTTCATTCAGCTGAGAT  200

seq1  AGAACTTCAGAAGAAAGGGTTATACCATTAATTCATGAGGTTGATAGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTCAGAAGAAAGGGTTATACCATTAATTCATGAGGTTGATAGAAA  250

seq1  ACTTGGACTAGAAGTTTTGGGTACTCACTAGAGAGTCACTTAGAGGAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGACTAGAAGTTTTGGGTACTCACTAGAGAGTCACTTAGAGGAGAA  300

seq1  ATGAAGAAGGTGTAAAAGATAAAGGTAGCCTAAGGTAACAATGAAATGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAGAAGGTGTAAAAGATAAAGGTAGCCTAAGGTAACAATGAAATGTC  350

seq1  AGATGCCATACAGTTGAATAAAAGAAACAAATTATCCATTAAGGAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCATACAGTTGAATAAAAGAAACAAATTATCCATTAAGGAAATAA  400

seq1  AAATATCTTTTTAAGTATGAAGTTCTTAAGATAGAACCAATCAAACTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTTTTTAAGTATGAAGTTCTTAAGATAGAACCAATCAAACTCTT  450

seq1  AGAAATGAGCTGTAGTTGTTGAGACTTGGCAAACCCACTAAGTTACAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGAGCTGTAGTTGTTGAGACTTGGCAAACCCACTAAGTTACAAAA  500

seq1  CAGTACTCATTGCACATCTTAAAGAATCATATTGGTAATCATTCTTAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTCATTGCACATCTTAAAGAATCATATTGGTAATCATTCTTAACA  550

seq1  ATCATAGAAACACACAAAACATTTGTAGAAGAATTTATTGTTTATTGGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAGAAACACACAAAACATTTGTAGAAGAATTTATTGTTTATTGGTA  600

seq1  GAAATAGATTCTTCTTCTATAAAATATATCTTCACCACAGTCTCCCTCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAGATTCTTCTTCTATAAAATATATCTTCACCACAGTCTCCCTCTT  650

seq1  CATTCATCCCTCCCAGCTCCACTCGCCACCTTTCCTCTCCTGGGATCTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCATCCCTCCCAGCTCCACTCGCCACCTTTCCTCTCCTGGGATCTAT  700

seq1  TCTCCCTCTTTAGAAAAGAATAGATCTCCAAGAGACAACAATAAAACATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCTTTAGAAAAGAATAGATCTCCAAGAGACAACAATAAAACATG  750

seq1  ACAAAAAACAAAATACAGTAAGAGAAGGTAGAAGCTCTCACATTGAAGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAACAAAATACAGTAAGAGAAGGTAGAAGCTCTCACATTGAAGGT  800

seq1  CAGCAAGACAACAGAGCAGGAGGAAGAGTCCCAGGACCAGGCATAAAAGT  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAGCAAGACAACAGAGCA-GAGGAAGAGTCCCAGGACCAGGCATAAAAGT  849

seq1  CAGAGACATAGCAACTCCCACTCTTAGGAGTCACCCCCCCCCCCAAAAAA  900
      |||||||||||||||||||||||||||||||||||||||||||  |||||
seq2  CAGAGACATAGCAACTCCCACTCTTAGGAGTCACCCCCCCCCC--AAAAA  897

seq1  AAAATATATAAAGCTAACAGCTAATAGCTGTTGAAAGCAAACCTTTGGGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATATAAAGCTAACAGCTAATAGCTGTTGAAAGCAAACCTTTGGGA  947

seq1  TCTATTCTAGAAAGCTCTTTGCATATTTGTACATACTGGTGATTAAGTTA  1000
      |||||||||| |||||||||||||| |||||||||||||||| |||||  
seq2  TCTATTCTAG-AAGCTCTTTGCATA-TTGTACATACTGGTGA-TAAGT--  992

seq1  AAGAGATATCAATGATAAAACAGAGGTATATCATCTTGTAGACCTGGAGG  1050
      |||||||||||||||||||||||| ||||||||||||||| || ||||||
seq2  AAGAGATATCAATGATAAAACAGA-GTATATCATCTTGTAAACTTGGAGG  1041

seq1  ATATAAAAGACAAAGGACTGGGAGGGAGGGACATAGGACCCAGAAATGTT  1100
      ||||||||||| ||||||||||||||| ||||||| |||||| |||||||
seq2  ATATAAAAGAC-AAGGACTGGGAGGGA-GGACATA-GACCCA-AAATGTT  1087

seq1  TCAGAGTGTCATCTAAGATAAAATCTAAAGGGTTCTGTTGACCCAGCGAA  1150
      || ||||||||||| |||||||   | ||||  |||| ||| ||| || |
seq2  TC-GAGTGTCATCT-AGATAAA---TTAAGG--TCTGGTGA-CCAACG-A  1128

seq1  ACATATGGCCACACCTTTCTGTCTCTGGGGATGTTCACTGGGTACATACA  1200
      |||||  |||| ||| |||||| ||||||   |||| |||     |||||
seq2  ACATA--GCCA-ACC-TTCTGT-TCTGGG--AGTTC-CTG----TATACA  1166

seq1  GACCAAGA-AGATGCTTCCTAGAGCAGA  1227
      || ||||| ||| || ||||||||||||
seq2  GA-CAAGAGAGA-GC-TCCTAGAGCAGA  1191

seq1: chr12_32631616_32631845
seq2: B6Ng01-102O03.g_360_635 (reverse)

seq1  CTCCCACTTCTTGGCCCTG-------------------------------  19
      |||||||||||||||||||                               
seq2  CTCCCACTTCTTGGCCCTGGTGTTCCCCTGTACTGAGGCATATAAAGTTT  50

seq1  GCAAGACCCATGGGCCTCTCTTTCCACTGA----------------CTTC  53
      | | |||| | |||||| |||| ||| |||                ||||
seq2  GTATGACCAAGGGGCCTTTCTTCCCAATGATGGCCGAATAGGCCATCTTC  100

seq1  TGATACATACGCAGCTAGAGACACGAGCTCCGGGGGTACTGGTCAGTTCA  103
      || |||| | ||||||||||||||||||||  ||||||||||| ||||||
seq2  TGCTACACATGCAGCTAGAGACACGAGCTCTAGGGGTACTGGTTAGTTCA  150

seq1  TAATGTTGTTCCACCTATAGGGTTGCAGACCCCTTTAGCTCCTTGGGTAC  153
      || |||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TATTGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGGGTAC  200

seq1  TTTCTCTAACTCCTCCATTGGGGACCCTGTGATCCTATCCAATAGCTGAC  203
      ||||||||  ||||||||||||| ||||||| ||| ||||||||||||||
seq2  TTTCTCTAGTTCCTCCATTGGGGGCCCTGTGTTCC-ATCCAATAGCTGAC  249

seq1  TGTGAGCATCCACTTCTGTGTTTGCTA  230
      |||||||||||||||||||||||||||
seq2  TGTGAGCATCCACTTCTGTGTTTGCTA  276