BAC Information

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BAC

Clone NameB6Ng01-103A03
Chromosome12 (Build37)
Map Location 78,151,637 - 78,332,174
singlet/doubletdoublet
Overlap geneLOC100041772
Upstream geneSyne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765
Downstream geneFut8, LOC230765, LOC666659, EG626215, Gphn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103A03.bB6Ng01-103A03.g
ACCDH911733DH911734
length1,0931,128
definitionDH911733|Mus musculus domesticus DNA, BAC clone: B6Ng01-103A03, 5' end.DH911734|Mus musculus domesticus DNA, BAC clone: B6Ng01-103A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,331,490 - 78,332,174)(78,151,637 - 78,152,777)
sequence
gaattctttgtttagctctgagccccatttttaatggggttttttgattt
tctggcatccaccttcttgagttctttatatatatattggatattagtcc
cctatctgatttaggataggtaaagatcctttcccaatctattggtggcc
tttttgtcttattgacggtgtcttttgccttgcagaagctttgcagtttc
atgaggtcccatttgtcaattctcgatattacagcacaagccattgatgt
tctattcaggaatttttcccctgttcccatatcttcgaggctttttccca
ctttctcctctataagtttcagtgtctctggttttatgtggagttccttg
atccacttagatttgaccttagtacaaggagataggaatggattgattca
cattcttctacatgggcacacacatgcacacgatgcgcacacagacacac
acacacacacaaaacgcaagtataagttacatatatgacctgaatttaat
cctaaattcagattttgccatctgtaaaaagggataataataatagtttg
tagagctgtaaaacagtcaatgactcaatatattaaaaagcttaatgcct
aatacacagtaaggattatgtataatacagccttgttaggcagtgctttt
ccactactaattttgtttatatccttactaactatttggaccagcaacct
gtatttttatatcatatgtgtagacaccttttaattgtgtgtggattgtg
gccaacacccatcttcccaatggagaagctgcctcctttatttccatatt
tccatcacaatggttacaggagtaatatctaagttactgctgattgtccc
ttggctgtggttcactgggcaagaagtaaacacctgtccaatcagatcca
attaagcctttcctacaggatttctggacttgaaagagaggtcttagacc
ttactagatagaaatctagaggtgttgctagatgtaattttaccaggtga
gaaacagttttgcagcacagataaagtcagtgaaagaggaaactgagaga
ccactacatggttttacacttggatcatcatttcaagtcttct
gaattctgtgttcaatgagagaccctgtcggactgagaaagacaccaaca
ttgacctctggcctccgcatgtgcatatgggtaagcaagcaacacgcata
catgtgcatgtgacacacacacacacacacacacacacacacacacacac
acacaatgccaaaaggagaaatgatctttcatctccacttctttatcaga
cacgtctgagaatcactttagagacgtgggcttgcctcttactcttactt
cagttgttctggttctgggtaggagaactcaagggtggcactatgaatag
gaccatcatggtagctcctttggcactctgcatggagtacagaagcatca
ttggggaagccctttgacctgcagtatgtggagcagtgagaactgggccc
atgcctttgcccctcccccaggctgcactgagacatgtgcacacaacatt
ggacactccattggctgtggacacagtagctcaactacacagctcttctc
ctccccaactccctcacttctgctcctaggaccacatttcccatgagaag
tgtgcaaagcttgaccctccacccacacttgccctgtggagtgtataagt
tgtttgttctgatgtcctaggctctactttccagaaacccgaatcatctt
ttcccttgtaagaactgtggttcatgtgaccttcctatgttgctcttttg
cggttgattttctttgagttcaaaggcaaatcatggtgttgaaatgtgct
acatgccatccgcaggaatgttttttaaagttctgcttgtgccatttaac
agtgtgaactctccttcctagccttgagtcatctatgaatttgcccataa
agtttattggctgttaaaaaaggccatcaatgactgacctgtaacctcac
tctcactctctctcccgactgctccgtgcttacagcctctttgcgtcact
ggtgcaaggccatgctttcagccccagggtcttgatgctgttgctctcct
cacttgaaacctcccccaagctcttcacatgaacttctctttgtgataca
tcagaactcagcttgaaatggagctcagcgggatgcctggtttcatccag
cgctgtttaactagtgagaactgtgtat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_78331490_78332174
seq2: B6Ng01-103A03.b_474_1138 (reverse)

seq1  AGAAGACCTGGAAATGATGATCCAAGTGTAAAAACCCATGTTAGTGGTCT  50
      |||||| || |||||||||||||||||||||||  ||||| |||||||||
seq2  AGAAGA-CTTGAAATGATGATCCAAGTGTAAAA--CCATG-TAGTGGTCT  46

seq1  CCTCAGTTTCCCTCTTTTCACTGACTTTATTCTGTTGCTGCAGAACAGTT  100
       |||||||| |||| |||||||||||||| |||| ||||||| ||| |||
seq2  -CTCAGTTT-CCTC-TTTCACTGACTTTA-TCTG-TGCTGCAAAACTGTT  91

seq1  TTCTTCACCTGGTAAAAATTACATCCAGTAACATCTCTTGGATTTGCTAT  150
      |   ||||||||| ||||||||||| || |||| ||| | ||||| ||||
seq2  T--CTCACCTGGT-AAAATTACATCTAGCAACACCTC-TAGATTT-CTAT  136

seq1  CTAGTAAGGTCTAAGACCTCTCTTTCAAGTCCAGAAATCCTGTAGGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTAAGGTCTAAGACCTCTCTTTCAAGTCCAGAAATCCTGTAGGAAAG  186

seq1  GCTTAATTGGATCTGATTGGACAGGTGTTTACTTCTTGCCCAGTGAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAATTGGATCTGATTGGACAGGTGTTTACTTCTTGCCCAGTGAACCA  236

seq1  CAGCCAAGGGACAATCAGCAGTAACTTGGATATTACTCCTGGGGCCATTG  300
      ||||||||||||||||||||||||||| |||||||||||||   ||||||
seq2  CAGCCAAGGGACAATCAGCAGTAACTTAGATATTACTCCTGTAACCATTG  286

seq1  TGATGGAAATATGGAAATAAAGGAGGCAGCTTCTCCATTGGGAAGATGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGAAATATGGAAATAAAGGAGGCAGCTTCTCCATTGGGAAGATGGG  336

seq1  TGTTGTCCACAATCCACACACAATTAAAAGGTGTCTACACATATGATTTA  400
      ||||| ||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTTGGCCACAATCCACACACAATTAAAAGGTGTCTACACATATGATATA  386

seq1  AAAATACAGGTTGCTGGTCCAAATAGTTAGTAAGGATATAGACAAAATTA  450
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAAATACAGGTTGCTGGTCCAAATAGTTAGTAAGGATATAAACAAAATTA  436

seq1  GTACTGGAAAAGCACTGCCTAACAAGGCTGTATTATACATAATCCTTACT  500
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGGAAAAGCACTGCCTAACAAGGCTGTATTATACATAATCCTTACT  486

seq1  GTGAATTAGGCATTAAGCTTTTTAATATATTGAGTCATTGACTGTTTTAC  550
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATTAGGCATTAAGCTTTTTAATATATTGAGTCATTGACTGTTTTAC  536

seq1  AGCTCTACAAACTATTATTATTATCCCTTTTTACAGATGGCAAAATCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTACAAACTATTATTATTATCCCTTTTTACAGATGGCAAAATCTGA  586

seq1  ATTTAGGATTAAATTCAGGTCATATATGTAACTTATACTTGGGTTTTGTG  650
      ||||||||||||||||||||||||||||||||||||||||| ||||    
seq2  ATTTAGGATTAAATTCAGGTCATATATGTAACTTATACTTGCGTTT----  632

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGCATCGTG  685
        ||||||||||||||||| |||||| ||||||||
seq2  --TGTGTGTGTGTGTGTGTCTGTGTGCGCATCGTG  665

seq1: chr12_78151637_78152777
seq2: B6Ng01-103A03.g_68_1195

seq1  GAATTCTGTGTTCAATGAGAGACCCTGTCGGACTGAGAAAGACACCAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTTCAATGAGAGACCCTGTCGGACTGAGAAAGACACCAACA  50

seq1  TTGACCTCTGGCCTCCGCATGTGCATATGGGTAAGCAAGCAACACGCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACCTCTGGCCTCCGCATGTGCATATGGGTAAGCAAGCAACACGCATA  100

seq1  CATGTGCATGTGACACACACACACACACACACACACACACACACACACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCATGTGACACACACACACACACACACACACACACACACACACAC  150

seq1  ACACAATGCCAAAAGGAGAAATGATCTTTCATCTCCACTTCTTTATCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAATGCCAAAAGGAGAAATGATCTTTCATCTCCACTTCTTTATCAGA  200

seq1  CACGTCTGAGAATCACTTTAGAGACGTGGGCTTGCCTCTTACTCTTACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCTGAGAATCACTTTAGAGACGTGGGCTTGCCTCTTACTCTTACTT  250

seq1  CAGTTGTTCTGGTTCTGGGTAGGAGAACTCAAGGGTGGCACTATGAATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGTTCTGGTTCTGGGTAGGAGAACTCAAGGGTGGCACTATGAATAG  300

seq1  GACCATCATGGTAGCTCCTTTGGCACTCTGCATGGAGTACAGAAGCATCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCATCATGGTAGCTCCTTTGGCACTCTGCATGGAGTACAGAAGCATCA  350

seq1  TTGGGGAAGCCCTTTGACCTGCAGTATGTGGAGCAGTGAGAACTGGGCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAAGCCCTTTGACCTGCAGTATGTGGAGCAGTGAGAACTGGGCCC  400

seq1  ATGCCTTTGCCCCTCCCCCAGGCTGCACTGAGACATGTGCACACAACATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTGCCCCTCCCCCAGGCTGCACTGAGACATGTGCACACAACATT  450

seq1  GGACACTCCATTGGCTGTGGACACAGTAGCTCAACTACACAGCTCTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTCCATTGGCTGTGGACACAGTAGCTCAACTACACAGCTCTTCTC  500

seq1  CTCCCCAACTCCCTCACTTCTGCTCCTAGGACCACATTTCCCATGAGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCAACTCCCTCACTTCTGCTCCTAGGACCACATTTCCCATGAGAAG  550

seq1  TGTGCAAAGCTTGACCCTCCACCCACACTTGCCCTGTGGAGTGTATAAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAAAGCTTGACCCTCCACCCACACTTGCCCTGTGGAGTGTATAAGT  600

seq1  TGTTTGTTCTGATGTCCTAGGCTCTACTTTCCAGAAACCCGAATCATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTCTGATGTCCTAGGCTCTACTTTCCAGAAACCCGAATCATCTT  650

seq1  TTCCCTTGTAAGAACTGTGGTTCATGTGACCTTCCTATGTTGCTCTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTGTAAGAACTGTGGTTCATGTGACCTTCCTATGTTGCTCTTTTG  700

seq1  CGGTTGATTTTCTTTGAGTTCAAAGGCAAATCATGGTGTTGAAATGTGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTGATTTTCTTTGAGTTCAAAGGCAAATCATGGTGTTGAAATGTGCT  750

seq1  ACATGCCATCCGCAGGAATGTTTTTTAAAGTTCTGCTTGTGCCATTTAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCCATCCGCAGGAATGTTTTTTAAAGTTCTGCTTGTGCCATTTAAC  800

seq1  AGTGTGAACTCTCCTTCCTAGCCTTGAGTCATCTATGAATTTGCCCATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAACTCTCCTTCCTAGCCTTGAGTCATCTATGAATTTGCCCATAA  850

seq1  AGTTTATTGGCTGTTTAAAAAAGGCCATCAATGACTGACCTGTAACCTCA  900
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTGGCTG-TTAAAAAAGGCCATCAATGACTGACCTGTAACCTCA  899

seq1  CCTCTCACTCTCCTCTCCCCGACTGCTCCGTGCTTACAGCCTCTTTGCGT  950
       |||||||||| |||| |||||||||||||||||||||||||||||||||
seq2  -CTCTCACTCT-CTCT-CCCGACTGCTCCGTGCTTACAGCCTCTTTGCGT  946

seq1  CACTGGTGCAAGGGCCATGCTTTCAGCCCCAGGGTCTTGATGCTGTTGCT  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CACTGGTGCAA-GGCCATGCTTTCAGCCCCAGGGTCTTGATGCTGTTGCT  995

seq1  CTCTCCACTTGAAACCCTCCCCCAAAGGCTCCTCACATGAACTTCTCTTT  1050
      |||  ||||||||| ||||||||||  |||| ||||||||||||||||||
seq2  CTCCTCACTTGAAA-CCTCCCCCAA--GCTCTTCACATGAACTTCTCTTT  1042

seq1  GTGATACATCAAGACTCAGGCTGAAATGGAGCTCAGCGGGTAGCCCTGGT  1100
      |||||||||||  ||||||  ||||||||||||||||||| |  ||||||
seq2  GTGATACATCAGAACTCAGCTTGAAATGGAGCTCAGCGGG-ATGCCTGGT  1091

seq1  TTCCATCCCCAGCGCTGTATAAACTAGTTGAG-ACTGTGTAT  1141
      || |||  |||||||||| | |||||| |||| |||||||||
seq2  TT-CAT--CCAGCGCTGT-TTAACTAG-TGAGAACTGTGTAT  1128