BAC Information

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BAC

Clone NameB6Ng01-103A05
Chromosome12 (Build37)
Map Location 11,642,798 - 11,788,028
singlet/doubletdoublet
Overlap geneLOC217390, LOC628327
Upstream geneLOC238074, LOC100042308, EG668435, Kcns3, LOC628276, Msgn1, 5830483C08Rik, Smc6, Vsnl1, EG209550
Downstream geneLOC627110, LOC100043209, D12Ertd553e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103A05.bB6Ng01-103A05.g
ACCDH911737DH911738
length1,178938
definitionDH911737|Mus musculus domesticus DNA, BAC clone: B6Ng01-103A05, 5' end.DH911738|Mus musculus domesticus DNA, BAC clone: B6Ng01-103A05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(11,642,798 - 11,644,303)(11,787,071 - 11,788,028)
sequence
gaattcatttttgacatgcaaaatcagctggagttttcaaatccaataat
tcgggggatgcttctgtttactgctatgaatgattgttggtgcaattgaa
atttcaaacctttagtatgctcttaagatgtgtctggtttaggaaattag
agggacatgaactataggaaaatagagaaccattttgataatattttttg
aaattgaatcttcttcagacattaccagtggataaataattaaatctgtt
tctgcatataattcttattagtagaaaatcacttgccgccttcttccttc
ctggaggagatgaaccaatatttaaagaatattggcttcgatagaggtca
agacctccacagtatctggctcattttgacttcctgtacctgggaaggag
tggttgacagtgatagaacctcactgacccaggtccttagttgtggacat
gctgagtcaggctcaggcttgctttcctctctgttctccattctgcatct
ttgcctctggtcagcatttcatcttctctgtgatatctttgatgtatatt
cagatattctaagggtgctactgatctaatatatctttaatgacttctag
ttgttctattcttcagtgatgtcttatgggtccagctcagcataaggcac
tgaaggggaataaaggggactataacaaaatcctgtccattgtaagacct
ggtcattatttattacgaatactaaatatagagatttactagtcctgaaa
agttttcatttggtcatgagattgtgtctcgtgagaatgtgttatatgta
ttttaggcattgagtagaatatgctcagggctggttctggctcactatga
tttcttgagggaattttatcatctggattttggtgaagaagccccttgta
cctctattagtctgcattcaaataaaggatgagaacaaaacacaacatga
aggatgatgacattggtgttcggatggagagatcctgacatttagcagag
aatagccagtggcagagcctcatcagcaatgacacctggagccatttgtg
ttcaggatctaacattggcatgaacagtgaaataaaccaacagagaaaga
agaatcaatgaagcagaatctttggggaacatgtttgggaactgaatgtc
aagggaggaagtgaagtagctaaatcta
gaattcactaatttactcacttggtaagtgggcagtaagcacctatagtt
acaggcattcaaaaaggattgtcttaccaagatagagactcttactttgg
tacagaagatgcatcaacaatgtaagactaactgttggtattgttcatca
aaagcctaggctagtttagtagccaagctttgagcttaaaataggtggga
gaactgactcacactttcctccctccctccctccctccttccctccctcc
ctcctttctcctttccttcctgccttccttcctctcttccttccttcctt
cctttttctctctcttttgtcatttcttatttcctttccacaaaataaga
aaaatatcaaaatgctcattttccccagtatcagtaatttctagatggcc
tccaggctctcccaagccctcagtcagtatactttatggtcacttttggt
cctcagataaatttgaacaggagggaaggttcactttgaaatgctttgtc
attctcaagactttcacccaggaaatggggtttaatgatacagacaatat
ctttaagcaccctgggaaccaagtaagacagactttttaaaaagaaacca
aaaatggtcttccaataatttggagaggaaaatgaccatgttatttttcc
ttaagaggaccagggacggaaaggagactttctcctcagggtgaatttac
tccactgcagtgtttccttctttcaaaatacaaaaacaagcttctgctga
agagacaaggaggagacagagtgaggataaaccagggctgtgccacattc
gtggaaaatggccacaaagtgctaagtgtgcattagaaatcctttataag
ctagtagaaaataaattctcaaattcttttcaagataaatactataaaaa
ctgctgtatttcatttccatacctagcagtcagtcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_11642798_11644303
seq2: B6Ng01-103A05.b_42_1219

seq1  GAATTCATTTTTGACATGCAAAATCAGCTGGAGTTTTCAAATCCAATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTTTGACATGCAAAATCAGCTGGAGTTTTCAAATCCAATAAT  50

seq1  TCGGGGGATGCTTCTGTTTACTGCTATGAATGATTGTTGGTGCAATTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGGGGATGCTTCTGTTTACTGCTATGAATGATTGTTGGTGCAATTGAA  100

seq1  ATTTCAAACCTTTAGTATGCTCTTAAGATGTGTCTGGTTTAGGAAATTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAACCTTTAGTATGCTCTTAAGATGTGTCTGGTTTAGGAAATTAG  150

seq1  AGGGACATGAACTATAGGAAAATAGAGAACCATTTTGATAATATTTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACATGAACTATAGGAAAATAGAGAACCATTTTGATAATATTTTTTG  200

seq1  AAATTGAATCTTCTTCAGACATTACCAGTGGATAAATAATTAAATCTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAATCTTCTTCAGACATTACCAGTGGATAAATAATTAAATCTGTT  250

seq1  TCTGCATATAATTCTTATTAGTAGAAAATCACTTGCCGCCTTCTTCCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCATATAATTCTTATTAGTAGAAAATCACTTGCCGCCTTCTTCCTTC  300

seq1  CTGGAGGAGATGAACCAATATTTAAAGAATATTGGCTTCGATAGAGGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGAGATGAACCAATATTTAAAGAATATTGGCTTCGATAGAGGTCA  350

seq1  AGACCTCCACAGTATCTGGCTCATTTTGACTTCCTGTACCTGGGAAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTCCACAGTATCTGGCTCATTTTGACTTCCTGTACCTGGGAAGGAG  400

seq1  TGGTTGACAGTGATAGAACCTCACTGACCCAGGTCCTTAGTTGTGGACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGACAGTGATAGAACCTCACTGACCCAGGTCCTTAGTTGTGGACAT  450

seq1  GCTGAGTCAGGCTCAGGCTTGCTTTCCTCTCTGTTCTCCATTCTGCATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTCAGGCTCAGGCTTGCTTTCCTCTCTGTTCTCCATTCTGCATCT  500

seq1  TTGCCTCTGGTCAGCATTTCATCTTCTCTGTGATATCTTTGATGTATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCTGGTCAGCATTTCATCTTCTCTGTGATATCTTTGATGTATATT  550

seq1  CAGATATTCTAAGGGTGCTACTGATCTAATATATCTTTAATGACTTCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATTCTAAGGGTGCTACTGATCTAATATATCTTTAATGACTTCTAG  600

seq1  TTGTTCTATTCTTCAGTGATGTCTTATGGGTCCAGCTCAGCATAAGGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTCTATTCTTCAGTGATGTCTTATGGGTCCAGCTCAGCATAAGGCAC  650

seq1  TGAAGGGGAATAAAGGGGACTATAACAAAATCCTGTCCATTGTAAGACCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGGAATAAAGGGGACTATAACAAAATCCTGTCCATTGTAAGACCT  700

seq1  GGTCATTATTTATTACGAATACTAAATATAGAGATTTACTAGTCCTGAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATTATTTATTACGAATACTAAATATAGAGATTTACTAGTCCTGAAA  750

seq1  AGTTTTCATTTGGTCATGAGATTGTGTCTCGTGAGAATGTGTTATATGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCATTTGGTCATGAGATTGTGTCTCGTGAGAATGTGTTATATGTA  800

seq1  TTTTAGGCATTGAGTAGAATATGCTCAGGGCTGGTTCTGGCTCACTATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGGCATTGAGTAGAATATGCTCAGGGCTGGTTCTGGCTCACTATGA  850

seq1  TTTCTTGAGGGAATTTTATCATCTGGATTTTGGTGAAGAAGCCCCTTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGAGGGAATTTTATCATCTGGATTTTGGTGAAGAAGCCCCTTGTA  900

seq1  CCTCTATTAGTCTGCATTCAAAATAAGGAATGAGAACAAAACACAACATG  950
      ||||||||||||||||||| |||||| | |||||||||||||||||||||
seq2  CCTCTATTAGTCTGCATTC-AAATAAAGGATGAGAACAAAACACAACATG  949

seq1  AAGGATGATGACATTGGTGTTCGGAATGGAAGAGATCCTGACATTTAGCA  1000
      |||||||||||||||||||||||| |||| ||||||||||||||||||||
seq2  AAGGATGATGACATTGGTGTTCGG-ATGG-AGAGATCCTGACATTTAGCA  997

seq1  GGAGAAATAGCCAGTGGCAGAGGCCTCATCAAGCAAATGACA-CTTGAGC  1049
       ||| |||||||||||||||| |||||||| ||| ||||||| || ||||
seq2  -GAG-AATAGCCAGTGGCAGA-GCCTCATC-AGC-AATGACACCTGGAGC  1042

seq1  CATTTGTGTTCAGGATTCTAACAATTGGCATGAACAGTGAAAATAAAACC  1099
      ||||||||||||||| |||||| |||||||||||||||||||   |||||
seq2  CATTTGTGTTCAGGA-TCTAAC-ATTGGCATGAACAGTGAAA--TAAACC  1088

seq1  AACAGAAGAAAAGAAAGAAATCACATGAAGCAGAATC-ATGGGGATCATG  1148
      ||||||   ||||||   ||||| |||||||||||||  |||||| ||||
seq2  AACAGA--GAAAGAA--GAATCA-ATGAAGCAGAATCTTTGGGGAACATG  1133

seq1  TTTGGGAACATGAATGGTCAAAGGAAGGGATAGTTGAAATGTAAGCTAAA  1198
      ||||||||| ||||| ||||| |||  ||| || |||| |   |||| ||
seq2  TTTGGGAAC-TGAAT-GTCAAGGGA--GGA-AG-TGAAGT---AGCT-AA  1173

seq1  ATCTTTAGGTTTCTTCACATTGCAATATGTGTTGGGTCTGAGGAACTGGA  1248
      ||||                                              
seq2  ATCTA---------------------------------------------  1178

seq1  AATAATTTGGTGGGTAATGGGTTTCATTAATAGTCATACTTCAGAAAGTG  1298
                                                        
seq2  --------------------------------------------------  1178

seq1  ATAGGATGAGAGCTCTACTTTAGAATTGTTCCCAAAAGATAGCATGAGAT  1348
                                                        
seq2  --------------------------------------------------  1178

seq1  ATATTGATACAGTAGAGCAATCAGAAAGCTATTAGCTAAAGGATCATTAT  1398
                                                        
seq2  --------------------------------------------------  1178

seq1  GGTTTTTCCTGTCACATCAGAAGGAATGGGTAAGACAGGAGGAGGGTAAT  1448
                                                        
seq2  --------------------------------------------------  1178

seq1  TATTGCAAAATAGTCCATAGATTTAACGGCCATTTCTGAAGATGGGTAGC  1498
                                                        
seq2  --------------------------------------------------  1178

seq1  TAAATCTA  1506
              
seq2  --------  1178

seq1: chr12_11787071_11788028
seq2: B6Ng01-103A05.g_67_1004 (reverse)

seq1  TGTGACTGACTGACTAAGGTATGGAAAATGAAATAGCAAGCACGTATTAT  50
      |||||||||||| || |||||||| ||||||||||   |||| || || |
seq2  TGTGACTGACTG-CT-AGGTATGG-AAATGAAATA--CAGCA-GT-TTTT  43

seq1  ATAGTATTTTATCTTTGAAAAGAGACTTTGAGAAATTTTATTTTCTTCTT  100
      |||||| |||||| ||||||  ||| ||||||||  |||||||||| || 
seq2  ATAGTA-TTTATC-TTGAAA--AGAATTTGAGAA--TTTATTTTCTACTA  87

seq1  GCTTATAAAGGATTTCCTATGCCCACTTAGCACCTTTGTGGCCATTTTCC  150
      ||||||||||||||||  |||| ||||||||| |||||||||||||||||
seq2  GCTTATAAAGGATTTCTAATGCACACTTAGCA-CTTTGTGGCCATTTTCC  136

seq1  ACGAATGTGGCACAGCCCTGGTTTATTCCTCAACTCTTGTCTTCCTCCTT  200
      ||||||||||||||||||||||||| ||||| |||| |||| ||||||||
seq2  ACGAATGTGGCACAGCCCTGGTTTA-TCCTC-ACTC-TGTC-TCCTCCTT  182

seq1  GTCTCTTCAGCAGAAGCTTGTTTTTGTATTTTTGAGAAGAAAGGAAACAC  250
      ||||||||||||||||||||||||||||||||   |||  ||||||||||
seq2  GTCTCTTCAGCAGAAGCTTGTTTTTGTATTTT---GAAAGAAGGAAACAC  229

seq1  TGCAGTGGAGTAAATTCACCCTGAGGAGAAAGTCTCCTTTCCGTCCCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGGAGTAAATTCACCCTGAGGAGAAAGTCTCCTTTCCGTCCCTGG  279

seq1  TCCTCTTAAGGAAAAATAACATGGTCATTTTCCTCTCCAAATTATTGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTAAGGAAAAATAACATGGTCATTTTCCTCTCCAAATTATTGGAA  329

seq1  GACCATTTTTGGTTTCTTTTT-AAAAGTCTGTCTTACTTGGTTCCCAGGG  399
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GACCATTTTTGGTTTCTTTTTAAAAAGTCTGTCTTACTTGGTTCCCAGGG  379

seq1  TGCTTAAAGATATTGTCTGTATCATTAAACCCCATTTCCTGGGTGAAAGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAAAGATATTGTCTGTATCATTAAACCCCATTTCCTGGGTGAAAGT  429

seq1  CTTGAGAATGACAAAGCATTTCAAAGTGAACCTTCCCTCCTGTTCAAATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGAATGACAAAGCATTTCAAAGTGAACCTTCCCTCCTGTTCAAATT  479

seq1  TATCTGAGGACCAAAAGTGACCATAAAGTATACTGACTGAGGGCTTGGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAGGACCAAAAGTGACCATAAAGTATACTGACTGAGGGCTTGGGA  529

seq1  GAGCCTGGAGGCCATCTAGAAATTACTGATACTGGGGAAAATGAGCATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGGAGGCCATCTAGAAATTACTGATACTGGGGAAAATGAGCATTT  579

seq1  TGATATTTTTCTTATTTTGTGGAAAGGAAATAAGAAATGACAAAAGAGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATTTTTCTTATTTTGTGGAAAGGAAATAAGAAATGACAAAAGAGAG  629

seq1  AGAAAAAGGAAGGAAGGAAGGAAGAGAGGAAGGAAGGCAGGAAGGAAAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGGAAGGAAGGAAGGAAGAGAGGAAGGAAGGCAGGAAGGAAAGG  679

seq1  AGAAAGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGAAAGTGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGAAAGTGTG  729

seq1  AGTCAGTTCTCCCACCTATTTTAAGCTCAAAGCTTGGCTACTAAACTAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTTCTCCCACCTATTTTAAGCTCAAAGCTTGGCTACTAAACTAGC  779

seq1  CTAGGCTTTTGATGAACAATACCAACAGTTAGTCTTACATTGTTGATGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTTTTGATGAACAATACCAACAGTTAGTCTTACATTGTTGATGCA  829

seq1  TCTTCTGTACCAAAGTAAGAGTCTCTATCTTGGTAAGACAATCCTTTTTG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTACCAAAGTAAGAGTCTCTATCTTGGTAAGACAATCCTTTTTG  879

seq1  AATGCCTGTAACTATAGGTGCTTACTGCCCACTTACCAAGTGAGTAAATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCTGTAACTATAGGTGCTTACTGCCCACTTACCAAGTGAGTAAATT  929

seq1  AGTGAATTC  958
      |||||||||
seq2  AGTGAATTC  938