BAC Information

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BAC

Clone NameB6Ng01-103K06
Chromosome12 (Build37)
Map Location 27,110,656 - 27,232,794
singlet/doubletdoublet
Overlap geneRsad2, Tyki, LOC668731
Upstream geneLOC100042973, LOC100042974, LOC668726, Rnf144
Downstream gene1700020D12Rik, Sox11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103K06.bB6Ng01-103K06.g
ACCDH912167DH912168
length1,2271,219
definitionDH912167|Mus musculus domesticus DNA, BAC clone: B6Ng01-103K06, 5' end.DH912168|Mus musculus domesticus DNA, BAC clone: B6Ng01-103K06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,110,656 - 27,111,897)(27,231,548 - 27,232,794)
sequence
gaattctctacagacacatctgatggaggtaatttttgtttagttgaggt
tccttctccttgggtgaccttagattgtgtcaaactgacaaaccaccaaa
gagctcagtgactttctcttgggtcaatttggtatagagagggtactggt
tcttctcatgttgatgtatcctgggtctcgttttagagttcctcaggaga
tagtctatggagtcacgggtgcatttacactaagccagccacactccata
tggtcttcctgcccaagcttctaggactcttacagaatgcaccaacacag
ccattgttgcttttaagagtaaggtaatgaccttctcgtgctcaaactcc
tgttttagtgtgatagacccaggcagcctgaacactgagcaaggtgcagc
cacacaagcaccactcttgtgcccacatcataaaaggcaagcttagtttg
gttttgtacagaaccctggaggcatggtgtagagcagccatcctttatac
agtgtcctcaggtgctggggccatgatcaccatctctccaggagttccag
gcacactttataaaaaagattctgacctggggttctttcagatgtctgtt
gactctttttatacttccaagtaaaaagtccaagactgcgaagtagaaag
aggaagtcttaggacaggcagcagtaattaaagacacatttggtaaagtt
tcctggtgtgaaaccagcaggtcagagggtaaatcactgatacctcaaat
gaaaataaaataaaagccgggcagtggtggcacacgcctttaatcccagc
acttgggaggcagaggcaggcaagtttctgagtttaaagccagcctggtc
tacagagtgagtttcatgacagccaaggctatacagagaacttctgtctc
aaaataaataaataaataaataattaataataaataaactaatattttaa
tatgagaggaaaggaaagaaaataagaataattaataataattaataatt
tttaatttgagaggaaagaaaagaaaaaaggatgaaagctcaaagtaaga
agatgaatgtcttagtgaatttcccttcagaataacaacaacattggttt
atttctcctcaccggtaccaatgaatgcttttcttctcaccacccttgtg
ggaagtagattctagccctgtgacaagtagactgttctgttccggccttt
cttgcttgctgcattttctctcttagt
gaattcacttcctaaattcaggatgcgggctggatgcttcctttctgatc
ctctgtttctgccaactctgctccatcccagagaagctttggttgtgtct
gtacttggctgctgagctttgtgtaagggttttgtcttctcagttccttc
tcagaaaaacctcttgggctccatgtgcccttcccagaaagcagctgtgc
tagcaagcagcttatgtcacaggcactgttgcctaaggaatgcaaatatt
ccccctccctgcttaccctggatggtagtggctcggctgtttctcagaca
gaaacttggagcccacacacagactttgaacttgtctttctttcctgttg
ggctcctggctgctgagagagagcaccctcatcatttgtcttttgtagtc
tgtgtttgttttagtttcatgaactgtgaatgggtgagataaagtgggaa
tgagctatgctgagccctgagcaaatgacagcaatatagagtcagttggg
gtgtgagcgggacattggtgctaaaagaggagagtcctagaatccagaag
aagaagctcacgcaagcccagttctgtctctgtctctccgactcccatag
cttcttgccacatgcatctgcagaaccaggcctctcaaagttgtccacaa
gccaatctatgagtctgtatcaagtcacataatagaagaagtagagtcac
agaggatactgtggatgagggagatgaaccccttgtgaccatctgttcct
tcatcatgaaagagagcagctagagaaaatatgactggctttgaaaatga
agactgtccctggagccaaggggtgtgggcagtctctggcagccctgaaa
gtacagaatgcttataataaagtgcttataatttgttctctgaagaactg
catttaatctgacttgtaaccttctttgccaatctgaaactcatgcaaac
ttgaatttgagccacacagtgataggaattagtgtgacataaaagtgatg
acattttccaggtgttctgcctctccttcgaagattcagatggtgattct
attctgggaaaggagaaatgctgaagcatcgttggtcgtgtttcccatcc
aacataagaacctctgagtttccttccttgggcggtgcctgagcaagttt
ccaggtcactcaaccttgtcatcactctatcccacacagctacagaatac
ctctctcctattgttttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_27110656_27111897
seq2: B6Ng01-103K06.b_43_1269

seq1  GAATTCTCTACAGACACATCTGATGGAGGTAATTTTTGTTTAGTTGAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTACAGACACATCTGATGGAGGTAATTTTTGTTTAGTTGAGGT  50

seq1  TCCTTCTCCTTGGGTGACCTTAGATTGTGTCAAACTGACAAACCACCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTCCTTGGGTGACCTTAGATTGTGTCAAACTGACAAACCACCAAA  100

seq1  GAGCTCAGTGACTTTCTCTTGGGTCAATTTGGTATAGAGAGGGTACTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGTGACTTTCTCTTGGGTCAATTTGGTATAGAGAGGGTACTGGT  150

seq1  TCTTCTCATGTTGATGTATCCTGGGTCTCGTTTTAGAGTTCCTCAGGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCATGTTGATGTATCCTGGGTCTCGTTTTAGAGTTCCTCAGGAGA  200

seq1  TAGTCTATGGAGTCACGGGTGCATTTACACTAAGCCAGCCACACTCCATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTATGGAGTCACGGGTGCATTTACACTAAGCCAGCCACACTCCATA  250

seq1  TGGTCTTCCTGCCCAAGCTTCTAGGACTCTTACAGAATGCACCAACACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTCCTGCCCAAGCTTCTAGGACTCTTACAGAATGCACCAACACAG  300

seq1  CCATTGTTGCTTTTAAGAGTAAGGTAATGACCTTCTCGTGCTCAAACTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTTGCTTTTAAGAGTAAGGTAATGACCTTCTCGTGCTCAAACTCC  350

seq1  TGTTTTAGTGTGATAGACCCAGGCAGCCTGAACACTGAGCAAGGTGCAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTAGTGTGATAGACCCAGGCAGCCTGAACACTGAGCAAGGTGCAGC  400

seq1  CACACAAGCACCACTCTTGTGCCCACATCATAAAAGGCAAGCTTAGTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAAGCACCACTCTTGTGCCCACATCATAAAAGGCAAGCTTAGTTTG  450

seq1  GTTTTGTACAGAACCCTGGAGGCATGGTGTAGAGCAGCCATCCTTTATAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTACAGAACCCTGGAGGCATGGTGTAGAGCAGCCATCCTTTATAC  500

seq1  AGTGTCCTCAGGTGCTGGGGCCATGATCACCATCTCTCCAGGAGTTCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCCTCAGGTGCTGGGGCCATGATCACCATCTCTCCAGGAGTTCCAG  550

seq1  GCACACTTTATAAAAAAGATTCTGACCTGGGGTTCTTTCAGATGTCTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACTTTATAAAAAAGATTCTGACCTGGGGTTCTTTCAGATGTCTGTT  600

seq1  GACTCTTTTTATACTTCCAAGTAAAAAGTCCAAGACTGCGAAGTAGAAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTTTTTATACTTCCAAGTAAAAAGTCCAAGACTGCGAAGTAGAAAG  650

seq1  AGGAAGTCTTAGGACAGGCAGCAGTAATTAAAGACACATTTGGTAAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTCTTAGGACAGGCAGCAGTAATTAAAGACACATTTGGTAAAGTT  700

seq1  TCCTGGTGTGAAACCAGCAGGTCAGAGGGTAAATCACTGATACCTCAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGTGTGAAACCAGCAGGTCAGAGGGTAAATCACTGATACCTCAAAT  750

seq1  GAAAATAAAATAAAAGCCGGGCAGTGGTGGCACACGCCTTTAATCCCAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAAAATAAAAGCCGGGCAGTGGTGGCACACGCCTTTAATCCCAGC  800

seq1  ACTTGGGAGGCAGAGGCAGGCAAGTTTCTGAGTTTAAGGCCAGCCTGGTC  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACTTGGGAGGCAGAGGCAGGCAAGTTTCTGAGTTTAAAGCCAGCCTGGTC  850

seq1  TACAGAGTGAGTTTCATGACAGCCAAGGCTATACAGAGAAC-TCTGTCTC  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TACAGAGTGAGTTTCATGACAGCCAAGGCTATACAGAGAACTTCTGTCTC  900

seq1  AAAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATATAT  949
       ||||||||||||||||||||||| |||   ||||||||||  ||||| |
seq2  -AAAATAAATAAATAAATAAATAATTAA--TAATAAATAAACTAATATTT  947

seq1  AAATATGAGAGGAAAAGAAAAGAAAAATAAGAAATAAATAAATAAATAAA  999
       |||||||||||||| ||||   ||||||||||   ||| |||||   ||
seq2  TAATATGAGAGGAAAGGAAA--GAAAATAAGAA--TAATTAATAA--TAA  991

seq1  TAAATAAATATATAAATATGAGAGGAAAAGAAAAGAAAAAAAAGAAGAAA  1049
      | |||||   | | ||| ||||||| |||||||||  ||||||| |  ||
seq2  TTAATAA--TTTTTAATTTGAGAGG-AAAGAAAAG--AAAAAAGGATGAA  1036

seq1  AGCTTCAAAGTAAGAAGATGGATGTCATAGTGAAATTCCC-TCAGAATAA  1098
      ||| |||||||||||||||| ||||| ||||||| ||||| ||||||| |
seq2  AGC-TCAAAGTAAGAAGATGAATGTCTTAGTGAATTTCCCTTCAGAAT-A  1084

seq1  ACAAACAAACATGGGTTTATTTCTCCCCACTGTTACCAATGAAATGCCTT  1148
      ||||   ||||| ||||||||||||| ||| | |||||||| ||||| ||
seq2  ACAA--CAACATTGGTTTATTTCTCCTCACCGGTACCAATG-AATGCTTT  1131

seq1  TC-TCTCACACACCTCTGTGG--AGTAGATCCTAGCCCTGTGAGCAGGTA  1195
      || |||||| ||||  |||||  ||||||| |||||||||||| || |||
seq2  TCTTCTCAC-CACCCTTGTGGGAAGTAGATTCTAGCCCTGTGA-CAAGTA  1179

seq1  GACTG-TCTGTTCTGTGCTTTCTTGCTTGGCTGCA-TTTCTCTCATAGT  1242
      ||||| ||||||| |  ||||||||||| |||||| |||||||| ||||
seq2  GACTGTTCTGTTCCGGCCTTTCTTGCTT-GCTGCATTTTCTCTCTTAGT  1227

seq1: chr12_27231548_27232794
seq2: B6Ng01-103K06.g_67_1285 (reverse)

seq1  TGAAAACAAATGGAGAAGAGGTATCTTGTTAGCTGTGTGTGTGGATTAGT  50
      |||||||||  |||| ||||||||  || ||||||||||   ||| ||| 
seq2  TGAAAACAATAGGAG-AGAGGTATTCTG-TAGCTGTGTG---GGA-TAG-  43

seq1  AGTTGGATGACAGAGGTTGAGTGGAACCTTGGGGACTATTGGCTCAGGGC  100
      |||  ||||||| ||||||||||  ||||   |||  | | |||||||  
seq2  AGT--GATGACA-AGGTTGAGTG--ACCT---GGA-AACTTGCTCAGGCA  84

seq1  ACGCC--AGGAAGG-AACTCAGAAGTTCTTTATTGTTGGATGGGAAACAC  147
       ||||  ||||||| |||||||| ||||||   |||||||||||||||||
seq2  CCGCCCAAGGAAGGAAACTCAGAGGTTCTT--ATGTTGGATGGGAAACAC  132

seq1  GACCAACGGAATGCTTCCAGCATTTCTCCTTTCCCAG-ATAGAATCCACA  196
      ||||||||  |||||| |||||||||||||||||||| ||||||| ||| 
seq2  GACCAACG--ATGCTT-CAGCATTTCTCCTTTCCCAGAATAGAAT-CACC  178

seq1  TTCTGAAAATCTTCGAAAGAGAGGCAGAACACCCTGGAAAATGTCATCAC  246
       ||||  |||||||||| ||||||||||||| ||||||||||||||||||
seq2  ATCTG--AATCTTCGAAGGAGAGGCAGAACA-CCTGGAAAATGTCATCAC  225

seq1  TTTTTATGTTCACACTAATTCCTTATCACTTGTGTGGCTCAAATTCAAGT  296
       ||||||| ||||||||||||| |||||| ||||||||||||||||||||
seq2  -TTTTATG-TCACACTAATTCC-TATCAC-TGTGTGGCTCAAATTCAAGT  271

seq1  TTGCATGAGTTTCAGATTTGGCAAAGAAGGTTACAAGTTCAGATTAAATG  346
      |||||||||||||||| |||||||||||||||||||| ||||||||||||
seq2  TTGCATGAGTTTCAGA-TTGGCAAAGAAGGTTACAAG-TCAGATTAAATG  319

seq1  CAGTTCTTCAGAGAACAAATTATAAGCACTTTATTATAAGCATTCTGTAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CAGTTCTTCAGAGAACAAATTATAAGCACTTTATTATAAGCATTCTGTA-  368

seq1  CTTTCAGGGCTGCCAGAGACTGCCCACACCCCTTGGCTCCAGGGACAGTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGGGCTGCCAGAGACTGCCCACACCCCTTGGCTCCAGGGACAGTC  418

seq1  TTCATTTTCAAAGCCAGTCATATTTTCTCTAGCTGCTCTCTTTCATGATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTCAAAGCCAGTCATATTTTCTCTAGCTGCTCTCTTTCATGATG  468

seq1  AAGGAACAGATGGTCACAAGGGGTTCATCTCCCTCATCCACAGTATCCTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAACAGATGGTCACAAGGGGTTCATCTCCCTCATCCACAGTATCCTC  518

seq1  TGTGACTCTACTTCTTCTATTATGTGACTTGATACAGACTCATAGATTGG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCTACTTCTTCTATTATGTGACTTGATACAGACTCATAGATTGG  568

seq1  CTTGTGGACAACTTTGAGAGGCCTGGTTCTGCAGATGCATGTGGCAAGAA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGGACAACTTTGAGAGGCCTGGTTCTGCAGATGCATGTGGCAAGAA  618

seq1  GCTATGGGAGTCGGAGAGACAGAGACAGAACTGGGCTTGCGTGAGCTTCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGGGAGTCGGAGAGACAGAGACAGAACTGGGCTTGCGTGAGCTTCT  668

seq1  TCTTCTGGATTCTAGGACTCTCCTCTTTTAGCACCAATGTCCCGCTCACA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGGATTCTAGGACTCTCCTCTTTTAGCACCAATGTCCCGCTCACA  718

seq1  CCCCAACTGACTCTATATTGCTGTCATTTGCTCAGGGCTCAGCATAGCTC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACTGACTCTATATTGCTGTCATTTGCTCAGGGCTCAGCATAGCTC  768

seq1  ATTCCCACTTTATCTCACCCATTCACAGTTCATGAAACTAAAACAAACAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCACTTTATCTCACCCATTCACAGTTCATGAAACTAAAACAAACAC  818

seq1  AGACTACAAAAGACAAATGATGAGGGTGCTCTCTCTCAGCAGCCAGGAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTACAAAAGACAAATGATGAGGGTGCTCTCTCTCAGCAGCCAGGAGC  868

seq1  CCAACAGGAAAGAAAGACAAGTTCAAAGTCTGTGTGTGGGCTCCAAGTTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACAGGAAAGAAAGACAAGTTCAAAGTCTGTGTGTGGGCTCCAAGTTT  918

seq1  CTGTCTGAGAAACAGCCGAGCCACTACCATCCAGGGTAAGCAGGGAGGGG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGAGAAACAGCCGAGCCACTACCATCCAGGGTAAGCAGGGAGGGG  968

seq1  GAATATTTGCATTCCTTAGGCAACAGTGCCTGTGACATAAGCTGCTTGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTTGCATTCCTTAGGCAACAGTGCCTGTGACATAAGCTGCTTGCT  1018

seq1  AGCACAGCTGCTTTCTGGGAAGGGCACATGGAGCCCAAGAGGTTTTTCTG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCTGCTTTCTGGGAAGGGCACATGGAGCCCAAGAGGTTTTTCTG  1068

seq1  AGAAGGAACTGAGAAGACAAAACCCTTACACAAAGCTCAGCAGCCAAGTA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAACTGAGAAGACAAAACCCTTACACAAAGCTCAGCAGCCAAGTA  1118

seq1  CAGACACAACCAAAGCTTCTCTGGGATGGAGCAGAGTTGGCAGAAACAGA  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACAACCAAAGCTTCTCTGGGATGGAGCAGAGTTGGCAGAAACAGA  1168

seq1  GGATCAGAAAGGAAGCATCCAGCCCGCATCCTGAATTTAGGAAGTGAATT  1246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGAAAGGAAGCATCCAGCCCGCATCCTGAATTTAGGAAGTGAATT  1218

seq1  C  1247
      |
seq2  C  1219