BAC Information

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BAC

Clone NameB6Ng01-104E11
Chromosome12 (Build37)
Map Location 59,093,166 - 59,094,396
singlet/doubletsinglet
Overlap genenone
Upstream geneSlc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
Downstream geneSstr1, Clec14a, LOC100040183, Sec23a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104E11.bB6Ng01-104E11.g
ACCDH912627DH912628
length1,1981,192
definitionDH912627|Mus musculus domesticus DNA, BAC clone: B6Ng01-104E11, 5' end.DH912628|Mus musculus domesticus DNA, BAC clone: B6Ng01-104E11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
atcgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaattgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctttttttggttgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactccttcgtttggttaattctttg
aatagttcttcttatttccacttggttgatttcacccctgagtttgatta
tttcctgccgtctactcctcttgggtgaatttgcttcctttttttctagg
gttttagatgtgttgtcaagctgctagtatgtgctgtctcccgtttcttc
tggaggcactcagcgctatgagtttccctctagaaatgctttcattgtgt
cccataggtttgggtacgttgtggcttcatttcattaaactctaaaagtc
tttaatttctttcttatttctttcctggacaagggatcattagaagaagg
tatcagttccacggtgaatgttggccttcattattatggtgtattgaaga
tacgactagccctcgtgggtctgatgagaaactatggagcaatttcaa
gaattctatgggatcccttgaccccacaagattagaacaaattgtcagag
ttagtttgaggccaagcagagcaattcagtgagaagctgagagaaggcag
attgaatcagtcaggctgaagaggagtttgagtcagaatagctgagttta
accagtcagccagagtccagaaagaactagaaagggtgagattattcagc
agtaaacctcagagatgacaattacatctggtggataaaagttacattta
cagtgtagcttttacctccccaccccaactttgatgtctatactttctcc
aatttattcacattgcacctgaaatattctttatataatacactaacaat
actgtatcttaagatacttcaacttattctatatatgttcataatcaaat
caaaaattagcacaacagaaaggacccactgccatctctagatcctagca
tccttatctcagtccaggtaccaatcctgaataaactattttaaattatt
gaaagaaagaaaaaatggtctttctaagttaatttttttgtgcattctct
ttcctttttaaaatgattcttctaacctctactcattcttcaggtctcag
ctagctcaaattgttatttcctatagaataatctcctgccctctaaccag
gcctatatatctcttctgggttgccatggcaccctgtttttaacacatac
cacactataaaaaaaatctctctttatctgctgtctctcctgcaggcaaa
aagtccttgacatccagaatagttccttatatcctgaatatccaagtgct
gattatgatggctgacagctaaacatccaggaccaagcaattacatgaga
cttggtatcatgacattttcctttaaagaacttataatttcttgactata
tgctagctctgatatgtatcaccattattgtttcacatcagtgaatacac
acatttaattacacaatgtttcccactagagttaggtacagctttgtctt
aagaagacagctcagtagaatacaaaactaatattgtaggtagcaagcct
aattcggataattgatgaaatcataccgaaggtattctttaaaaaagcta
ctgggtgtaaaatgaatttatgagtgtctcaaaagaacattgaactcagg
gtaacagagaaggtgtgatatggtacaatgctatggggaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_59093166_59094396
seq2: B6Ng01-104E11.g_70_1261 (reverse)

seq1  CCCTCCCCATAAGACATTGTTCACATTTAATTCCATCAACAATCCTCCTG  50
      |||||||||||   |||||| | ||| | |  || ||          |||
seq2  CCCTCCCCATA--GCATTGTAC-CATATCACACCTTC---------TCTG  38

seq1  TTACTCCTGCAGTTTTCAATGTTCTCTCTTGAGAACATCAATAATGTTCA  100
      |||| |||| ||  ||||||||  ||| ||||||   |||  |||     
seq2  TTAC-CCTG-AG--TTCAATGT--TCTTTTGAGACACTCATAAAT----T  78

seq1  CATTTTACCACACAGTTAGCTATTTTTTAAAG-ATACATTCTGTATTGAT  149
      ||||||| ||| ||| ||||  |||||||||| |||| ||| ||| ||| 
seq2  CATTTTA-CACCCAG-TAGC--TTTTTTAAAGAATACCTTCGGTA-TGA-  122

seq1  TTTCATCTAATTATCTGATTTAAGACTTGCTACCTACAATATTAGTTTTG  199
      ||||||| ||||||| || || || |||||||||||||||||||||||||
seq2  TTTCATC-AATTATCCGAATT-AGGCTTGCTACCTACAATATTAGTTTTG  170

seq1  TATTCTAACTTGAAGCTGGTCTTCTTAAGACAAAGCTGTACCTAACTCTA  249
      |||||| |||   |||| ||||||||||||||||||||||||||||||||
seq2  TATTCT-ACT--GAGCT-GTCTTCTTAAGACAAAGCTGTACCTAACTCTA  216

seq1  GTTGGGAACATTGTTGTAATTTAAAATGTGTGTAATTCACTGATGTGAAA  299
      || || ||||||| |||||||  |||||||||| ||||||||||||| ||
seq2  GTGGGAAACATTG-TGTAATT--AAATGTGTGT-ATTCACTGATGTG-AA  261

seq1  ACAATAATGGTGATACATTATCAGAGCTAGCATATAGTCAAGAAATTATA  349
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ACAATAATGGTGATACA-TATCAGAGCTAGCATATAGTCAAGAAATTATA  310

seq1  AGTTCTTTAAAGGAAAATGTCATGATACCAAGTCTCATGTAATTGCTTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTAAAGGAAAATGTCATGATACCAAGTCTCATGTAATTGCTTGG  360

seq1  TCCTGGATGTTTAGCTGTCAGCCATCATAATCAGCACTTGGATATTCAGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGATGTTTAGCTGTCAGCCATCATAATCAGCACTTGGATATTCAGG  410

seq1  ATATAAGGAACTATTCTGGATGTCAAGGACTTTTTGCCTGCAGGAGAGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGGAACTATTCTGGATGTCAAGGACTTTTTGCCTGCAGGAGAGAC  460

seq1  AGCAGATAAAGAGAGATTTTTTTTATAGTGTGGTATGTGTTAAAAACAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATAAAGAGAGATTTTTTTTATAGTGTGGTATGTGTTAAAAACAGG  510

seq1  GTGCCATGGCAACCCAGAAGAGATATATAGGCCTGGTTAGAGGGCAGGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCATGGCAACCCAGAAGAGATATATAGGCCTGGTTAGAGGGCAGGAG  560

seq1  ATTATTCTATAGGAAATAACAATTTGAGCTAGCTGAGACCTGAAGAATGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCTATAGGAAATAACAATTTGAGCTAGCTGAGACCTGAAGAATGA  610

seq1  GTAGAGGTTAGAAGAATCATTTTAAAAAGGAAAGAGAATGCACAAAAAAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGTTAGAAGAATCATTTTAAAAAGGAAAGAGAATGCACAAAAAAA  660

seq1  TTAACTTAGAAAGACCATTTTTTCTTTCTTTCAATAATTTAAAATAGTTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTTAGAAAGACCATTTTTTCTTTCTTTCAATAATTTAAAATAGTTT  710

seq1  ATTCAGGATTGGTACCTGGACTGAGATAAGGATGCTAGGATCTAGAGATG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGGATTGGTACCTGGACTGAGATAAGGATGCTAGGATCTAGAGATG  760

seq1  GCAGTGGGTCCTTTCTGTTGTGCTAATTTTTGATTTGATTATGAACATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGGTCCTTTCTGTTGTGCTAATTTTTGATTTGATTATGAACATAT  810

seq1  ATAGAATAAGTTGAAGTATCTTAAGATACAGTATTGTTAGTGTATTATAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATAAGTTGAAGTATCTTAAGATACAGTATTGTTAGTGTATTATAT  860

seq1  AAAGAATATTTCAGGTGCAATGTGAATAAATTGGAGAAAGTATAGACATC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATATTTCAGGTGCAATGTGAATAAATTGGAGAAAGTATAGACATC  910

seq1  AAAGTTGGGGTGGGGAGGTAAAAGCTACACTGTAAATGTAACTTTTATCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTGGGGTGGGGAGGTAAAAGCTACACTGTAAATGTAACTTTTATCC  960

seq1  ACCAGATGTAATTGTCATCTCTGAGGTTTACTGCTGAATAATCTCACCCT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATGTAATTGTCATCTCTGAGGTTTACTGCTGAATAATCTCACCCT  1010

seq1  TTCTAGTTCTTTCTGGACTCTGGCTGACTGGTTAAACTCAGCTATTCTGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGTTCTTTCTGGACTCTGGCTGACTGGTTAAACTCAGCTATTCTGA  1060

seq1  CTCAAACTCCTCTTCAGCCTGACTGATTCAATCTGCCTTCTCTCAGCTTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAACTCCTCTTCAGCCTGACTGATTCAATCTGCCTTCTCTCAGCTTC  1110

seq1  TCACTGAATTGCTCTGCTTGGCCTCAAACTAACTCTGACAATTTGTTCTA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGAATTGCTCTGCTTGGCCTCAAACTAACTCTGACAATTTGTTCTA  1160

seq1  ATCTTGTGGGGTCAAGGGATCCCATAGAATTC  1231
      ||||||||||||||||||||||||||||||||
seq2  ATCTTGTGGGGTCAAGGGATCCCATAGAATTC  1192