BAC Information

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BAC

Clone NameB6Ng01-105J08
Chromosome12 (Build37)
Map Location 106,194,624 - 106,195,480
singlet/doubletsinglet
Overlap gene4831426I19Rik
Upstream geneSerpina1e, Serpina11, Serpina9, Serpina12, Serpina4-ps1, Serpina5, Serpina3a, Serpina3b, Serpina3c, LOC435318, LOC628883, Serpina3f, LOC667997, Serpina3g, Serpina3h, EG628900, EG238395, Serpina3k, EG628916, Serpina3m, Serpina3n, Gsc, Dicer1, Clmn
Downstream geneSnhg10, Glrx5, LOC100040301, Tcl1b2, Tcl1b1, Tcl1b5, Tcl1b3, Tcl1b4, Tcl1, LOC100040310, 2810011L19Rik, LOC100040339, EG668081, D430019H16Rik, Bdkrb2, Bdkrb1, 2410024A21Rik, 4933433P14Rik, Ak7, Papola
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105J08.bB6Ng01-105J08.g
ACCDH913565DH913566
length621860
definitionDH913565|Mus musculus domesticus DNA, BAC clone: B6Ng01-105J08, 5' end.DH913566|Mus musculus domesticus DNA, BAC clone: B6Ng01-105J08, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcccaactaaagaacatgcagagactggacctcggccttctcattc
atgcgtagcagatgtgcagcttggtcttcatgtggatcccaaacaactgg
aacagtggctatggcaaaagctgttgcctgctgtgatggtttgtatattc
ttggactagggagtggcaccatttggattgtagccttgttggaataggtg
tgacctggttggagtaagtgtatcactgtgggtgttggcttaagactctc
acaccagttgcctggaagtcagtcttccactagcaacctttggatgaaga
cgtagaactctcacatgatgctgccatgctcccacatgatgataatggac
tgaatctctgagcctgtaaggtagccccagtgaaatgttgtttttttaca
agacttgccttggtcatagttctgctcacagcattaaaaccctaactaag
acacctgtacatgggatatattcttctactgtgctgccttgtctggtttc
aatgggagaagaagcacctagcctcacagagacttgaagagatgaaagga
tatccaggtggaatagggtccccagctactcataggagaagggaatgggg
gtatagggaaggaatattgaa
gaattccaaggaagccaaataaatgctgggtgggcgaggtgggccaactg
taatctcggtttatggaggcagaggtggcaggggatggctaacaagaccg
gccacacccatgagccctgtgtccagcgaataatgcagaagtgtaaacaa
ggaggattcccagcaccaaccatgagctcacacatgggtaagctccaggc
tgcaggctgagcagcgggctccaggggaacagggccaaacctggttaaag
attcttccagcaacactcagtagaccagcaagggtgagaggtaaactggt
ccagtgtgttgatggaggccatgtgccttgtgggatggtaggtggttttt
ctttaattctctgggaatctttaccgtctctgggtaatataggtttattt
ttctaatcagaacaagaactatcaaatcaggttgacacccagcacaattt
gtgcctccctctctgctctgtgcatctgagcatccttagacacaagggca
tctcatggaccaagagctcagtggtgacatgcagggtttatcagccatga
aaagccccagtgggctggtgagatggctcagcgggttaagagcactgact
gctcctctgaaggtcctgagttcaaatcccagcaaccacatggtgactca
caaccatctgtacagctacagtatacttgtatacataaaataaataaata
aataaataaataaatctttttaaaaaaaaaaaaaagaaaaagaaaaaacc
ccattgttgagggacttttgtgacagatgctgccaaatgctcttcctcct
agtccccttttcccaaacaccaacatttgttttggaagtaatgtgcccag
cctaaaggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_106194624_106195480
seq2: B6Ng01-105J08.g_68_927

seq1  GAATTCCAAGGAAGCCAAATAAATGCTGGGTGGGCGAGGTGGGCCAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGGAAGCCAAATAAATGCTGGGTGGGCGAGGTGGGCCAACTG  50

seq1  TAATCTCGGTTTATGGAGGCAGAGGTGGCAGGGGATGGCTAACAAGACCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTCGGTTTATGGAGGCAGAGGTGGCAGGGGATGGCTAACAAGACCG  100

seq1  GCCACACCCATGAGCCCTGTGTCCAGCGAATAATGCAGAAGTGTAAACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACCCATGAGCCCTGTGTCCAGCGAATAATGCAGAAGTGTAAACAA  150

seq1  GGAGGATTCCCAGCACCAACCATGAGCTCACACATGGGTAAGCTCCAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGATTCCCAGCACCAACCATGAGCTCACACATGGGTAAGCTCCAGGC  200

seq1  TGCAGGCTGAGCAGCGGGCTCCAGGGGAACAGGGCCAAACCTGGTTAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCTGAGCAGCGGGCTCCAGGGGAACAGGGCCAAACCTGGTTAAAG  250

seq1  ATTCTTCCAGCAACACTCAGTAGACCAGCAAGGGTGAGAGGTAAACTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCCAGCAACACTCAGTAGACCAGCAAGGGTGAGAGGTAAACTGGT  300

seq1  CCAGTGTGTTGATGGAGGCCATGTGCCTTGTGGGATGGTAGGTGGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGTGTTGATGGAGGCCATGTGCCTTGTGGGATGGTAGGTGGTTTTT  350

seq1  CTTTAATTCTCTGGGAATCTTTACCGTCTCTGGGTAATATAGGTTTATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTCTCTGGGAATCTTTACCGTCTCTGGGTAATATAGGTTTATTT  400

seq1  TTCTAATCAGAACAAGAACTATCAAATCAGGTTGACACCCAGCACAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATCAGAACAAGAACTATCAAATCAGGTTGACACCCAGCACAATTT  450

seq1  GTGCCTCCCTCTCTGCTCTGTGCATCTGAGCATCCTTAGACACAAGGGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCCCTCTCTGCTCTGTGCATCTGAGCATCCTTAGACACAAGGGCA  500

seq1  TCTCATGGACCAAGAGCTCAGTGGTGACATGCAGGGTTTATCAGCCATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGGACCAAGAGCTCAGTGGTGACATGCAGGGTTTATCAGCCATGA  550

seq1  AAAGCCCCAGTGGGCTGGTGAGATGGCTCAGCGGGTTAAGAGCACTGACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCCAGTGGGCTGGTGAGATGGCTCAGCGGGTTAAGAGCACTGACT  600

seq1  GCTCCTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGACTCA  650

seq1  CAACCATCTGTACAGCTACAGTATACTTGTATACATAAAATAAATAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATCTGTACAGCTACAGTATACTTGTATACATAAAATAAATAAATA  700

seq1  AATAAATAAATAAATC-TTTTAAAAAAAAAAAAAAGAAAAAG-AAAAACC  748
      |||||||||||||||| ||||||||||||||||||||||||| |||||||
seq2  AATAAATAAATAAATCTTTTTAAAAAAAAAAAAAAGAAAAAGAAAAAACC  750

seq1  CCAGTGTTGAGGGAC-TTTGTGACAGATGCTGCCAAATGCTCTTCCTCCT  797
      ||| ||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCATTGTTGAGGGACTTTTGTGACAGATGCTGCCAAATGCTCTTCCTCCT  800

seq1  AGTCCCCTTTTCCCAAACAGCCAACATTTGTTTTGGAAGTAATGTGCCCA  847
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AGTCCCCTTTTCCCAAACA-CCAACATTTGTTTTGGAAGTAATGTGCCCA  849

seq1  G-CTAAAGGCT  857
      | |||||||||
seq2  GCCTAAAGGCT  860