BAC Information

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BAC

Clone NameB6Ng01-106B20
Chromosome12 (Build37)
Map Location 103,919,578 - 104,056,701
singlet/doubletdoublet
Overlap geneItpk1, Moap1, D230037D09Rik, 5730410I19Rik, Btbd7
Upstream geneMtac2d1, Fbln5, Trip11, Atxn3, LOC100040305, LOC100040297, Cpsf2, Slc24a4, Rin3, Lgmn, Golga5, Chga
Downstream geneEG634678, Cox8c, 9030205A07Rik, LOC667269, Prima1, EG544888, Asb2, Otub2, Ddx24, D12Ertd647e, Ifi27, 1810023F06Rik, 8430415E04Rik, Serpina10, Serpina6, Gm46, Serpina1f, EG435316, Serpina1b, Serpina1d, LOC667951
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106B20.bB6Ng01-106B20.g
ACCDH913944DH913945
length8521,213
definitionDH913944|Mus musculus domesticus DNA, BAC clone: B6Ng01-106B20, 5' end.DH913945|Mus musculus domesticus DNA, BAC clone: B6Ng01-106B20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,055,849 - 104,056,701)(103,919,578 - 103,920,806)
sequence
gaattctcctcccaaggaagtgtaaagagaaacacttacccacagagtcc
aaagactggccatttaaaactgaggcataggttagcttgtcttctagtct
tctagcctgcatgtatgattttttttttttttttttttttttttgccttg
gacttggaatttctactttcctttttaaaataattaagtagggacggtgt
gatggtagcagtgttccacagacctttcaaccatgtgtgtggtatagata
cttgagaaatgcagaaagtaggaagaaaactttaggagttgatatgtgag
attctgaagatttgaaaataggtggtattagtaggagtggttacaaggat
aagaggaaagataaaaagcccataagagtattttgaaagaaaaatcattg
ggactagactaaatgttgaggtcaaagtgtccttgagatctcactctggc
ctcccctttgggcccttggtccttgtaatctctttcaaaagaattcagat
gtgacacacggtgtgaatttagaagagtttataggaaagaacactctcaa
ggggtgtcagtgaacaatgaaagggacagttgttcaaatctttattttat
actttatactgttgctgtttgtttgtttgtttgtttgtttatgattgttc
agctgcctgtatacctgcatgccagaagagggcatcaaatccctttatag
atggttaggagcccacatgtacgtgctgagaatttatctccgctctggaa
gagcggccagtgctcgtaactgctaagccctactgctgcctttttaaaca
gttatttatttatgtatttaatcatttggctgtcttggggggagagagag
ac
gaattctattgtccatggttcacgattttccaacacccactgtttacaga
agcagccctgcacatagacagcaagcatgcagagtactcacactcagaaa
ggctacacaccagtgactgagctgtctcctgagcggccaacgcacctctc
caactataaactccttcctggtcccaggagcgcctggggattctgaagcc
acacaccttacagggactcttggacatagatttccctcacctgactgtca
ccgtcagatgttgggcttctctgtggaaccctggcacaggggagccccta
agccacaggttcgatgtaaacagtcccatgagaggcggaggggtataaac
catgagctggctggcgggtgtgccatggggtcccaagttcagccaacatc
ctcaccaccctcaccagcaggaggcgcctgagggttcatgacagagcaag
aggcagagttggccctgcctgcctcagaggattgtctacacactgcccaa
accttggtcccaaggtgcaggcagtgactttaccctttatccactggtct
gccatggggtagaaagccaagaagcctggctctgatatccacgtggccag
agagagttccgaccttgacccaaaactgctctctgaggttgcagtctcac
cctacagccggatggagatggtcattgtaaatgagtactgtatttgtagc
ctatggcttccgtaacaaatgaaacacactggatccacagaggacaacta
aaagcaacagagaaccttccatggtgtgggtcggcctgttcttccttctc
agggtgggaggactgcactctggcctggcctctccagttctggaaactgt
cacactctttggcccccagccacatcgctgactagcctcatctcctctct
ttggcactccctcctcatctatcaggacctttgtgacagccctgggtcca
cccagctaatccagggcaatttccctgtctcggatcacccctgtgtggca
ctggtgccctctgaccatgcaaagcagctgggttcacagagtctgaccac
aagactgccatctctggtagctccttgttttgtcgctaacgcacaaagat
ttcagcgggttgctaccctgtgaccggtaccttcctctaagttccagttg
aaggcaagaaacctgtcctgaattcaagggagctctggatgtacctaaga
ggcggagtatcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_104055849_104056701
seq2: B6Ng01-106B20.b_35_886 (reverse)

seq1  GTCTCTCTCTCCCCCC-AGACAGACAAATAAATAAATACATAAATAAATA  49
      |||||||||||||||| |||||| ||||| | ||||||||||||||||||
seq2  GTCTCTCTCTCCCCCCAAGACAGCCAAATGATTAAATACATAAATAAATA  50

seq1  ACTGTTTAAAAAAGGCAACAGTAGGGCTTAGCAGTTAAGAGCACTGGCTG  99
      ||||||| ||||||||| ||||||||||||||||||| |||||||||| |
seq2  ACTGTTT-AAAAAGGCAGCAGTAGGGCTTAGCAGTTACGAGCACTGGCCG  99

seq1  CTCTTCCAGAGCCTGAGTTAAATTCCTAGCACCTACATGTTGGCTCCTAA  149
      ||||||||||| | ||| |||||||  ||||| ||||||| |||||||||
seq2  CTCTTCCAGAG-CGGAGATAAATTCTCAGCACGTACATGTGGGCTCCTAA  148

seq1  CCATCTATAAAGGGATCTGATGCCCTCTTCTGGCATGCAGGTATACAGGC  199
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCATCTATAAAGGGATTTGATGCCCTCTTCTGGCATGCAGGTATACAGGC  198

seq1  AGCTGAACAATCATAAACAAACAAACAAACAAACAAACAGCAACAGTATA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAACAATCATAAACAAACAAACAAACAAACAAACAGCAACAGTATA  248

seq1  AAGTATAAAATAAAGATCTGAACAACTGTCCCTTTCATTGTTCACTGACA  299
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAGTATAAAATAAAGATTTGAACAACTGTCCCTTTCATTGTTCACTGACA  298

seq1  CCCCTTGAGAGTGTTCTTTCCTATAAACTCTTCTAAATTCACACCGTGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGAGAGTGTTCTTTCCTATAAACTCTTCTAAATTCACACCGTGTG  348

seq1  TCACATCTGAATTCTTTTGAAAGAGATTACAAGGACCAAGGGCCCAAAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCTGAATTCTTTTGAAAGAGATTACAAGGACCAAGGGCCCAAAGG  398

seq1  GGAGGCCAGAGTGAGATCTCAAGGACACTCTGACCTCAACATCTAGTCTA  449
      ||||||||||||||||||||||||||||| |||||||||||| |||||||
seq2  GGAGGCCAGAGTGAGATCTCAAGGACACTTTGACCTCAACATTTAGTCTA  448

seq1  GTCCCAATGACTCTTCTTTCAAAATACTCTTATGGGCTTTTTATCTTTCC  499
      |||||||||| | |||||||||||||||||||||||||||||||||||||
seq2  GTCCCAATGATTTTTCTTTCAAAATACTCTTATGGGCTTTTTATCTTTCC  498

seq1  TCTTATCCTTGTAACCACTCCTACTAATACCACCTATTTTCAAATCTTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCCTTGTAACCACTCCTACTAATACCACCTATTTTCAAATCTTCA  548

seq1  GAATCTCACATATCAACTCCTAAAGTTTTCTTCCTACTTTCTGCATTTCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCACATATCAACTCCTAAAGTTTTCTTCCTACTTTCTGCATTTCT  598

seq1  CAAGTATCTATACCACACACATGGTTGAAAGGTCTGTGGAACACTGCTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATCTATACCACACACATGGTTGAAAGGTCTGTGGAACACTGCTAC  648

seq1  CATCACACCGTCCCTACTTAACTATTTTAAAAAGGAAAGTAGAAATTCCA  699
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CATCACACCGTCCCTACTTAATTATTTTAAAAAGGAAAGTAGAAATTCCA  698

seq1  AGTCCAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAATCATACATGCAGGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAATCATACATGCAGGC  748

seq1  TAGAAGACTAGAAGACAAGCTAACCTATGCCTCAGTTTTAAATGGCCAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGACTAGAAGACAAGCTAACCTATGCCTCAGTTTTAAATGGCCAGT  798

seq1  CTTTGGACTCTGTGGGTAAGTGTTTCTCTTTACACTTCCTTGGGAGGAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGACTCTGTGGGTAAGTGTTTCTCTTTACACTTCCTTGGGAGGAGA  848

seq1  ATTC  853
      ||||
seq2  ATTC  852

seq1: chr12_103919578_103920806
seq2: B6Ng01-106B20.g_65_1277

seq1  GAATTCTATTGTCCATGGTTCACGATTTTCCAACACCCACTGTTTACAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTGTCCATGGTTCACGATTTTCCAACACCCACTGTTTACAGA  50

seq1  AGCAGCCCTGCACATAGACAGCAAGCATGCAGAGTACTCACACTCAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCCCTGCACATAGACAGCAAGCATGCAGAGTACTCACACTCAGAAA  100

seq1  GGCTACACACCAGTGACTGAGCTGTCTCCTGAGCGGCCAACGCACCTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACACACCAGTGACTGAGCTGTCTCCTGAGCGGCCAACGCACCTCTC  150

seq1  CAACTATAAACTCCTTCCTGGTCCCAGGAGCGCCTGGGGATTCTGAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTATAAACTCCTTCCTGGTCCCAGGAGCGCCTGGGGATTCTGAAGCC  200

seq1  ACACACCTTACAGGGACTCTTGGACATAGATTTCCCTCACCTGACTGTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACCTTACAGGGACTCTTGGACATAGATTTCCCTCACCTGACTGTCA  250

seq1  CCGTCAGATGTTGGGCTTCTCTGTGGAACCCTGGCACAGGGGAGCCCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTCAGATGTTGGGCTTCTCTGTGGAACCCTGGCACAGGGGAGCCCCTA  300

seq1  AGCCACAGGTTCGATGTAAACAGTCCCATGAGAGGCGGAGGGGTATAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGGTTCGATGTAAACAGTCCCATGAGAGGCGGAGGGGTATAAAC  350

seq1  CATGAGCTGGCTGGCGGGTGTGCCATGGGGTCCCAAGTTCAGCCAACATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGCTGGCTGGCGGGTGTGCCATGGGGTCCCAAGTTCAGCCAACATC  400

seq1  CTCACCACCCTCACCAGCAGGAGGCGCCTGAGGGTTCATGACAGAGCAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCACCCTCACCAGCAGGAGGCGCCTGAGGGTTCATGACAGAGCAAG  450

seq1  AGGCAGAGTTGGCCCTGCCTGCCTCAGAGGATTGTCTACACACTGCCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGTTGGCCCTGCCTGCCTCAGAGGATTGTCTACACACTGCCCAA  500

seq1  ACCTTGGTCCCAAGGTGCAGGCAGTGACTTTACCCTTTATCCACTGGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGTCCCAAGGTGCAGGCAGTGACTTTACCCTTTATCCACTGGTCT  550

seq1  GCCATGGGGTAGAAAGCCAAGAAGCCTGGCTCTGATATCCACGTGGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGGGGTAGAAAGCCAAGAAGCCTGGCTCTGATATCCACGTGGCCAG  600

seq1  AGAGAGTTCCGACCTTGACCCAAAACTGCTCTCTGAGGTTGCAGTCTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGTTCCGACCTTGACCCAAAACTGCTCTCTGAGGTTGCAGTCTCAC  650

seq1  CCTACAGCCGGATGGAGATGGTCATTGTAAATGAGTACTGTATTTGTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAGCCGGATGGAGATGGTCATTGTAAATGAGTACTGTATTTGTAGC  700

seq1  CTATGGCTTCCGTAACAAATGAAACACACTGGATCCACAGAGGACAACTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGCTTCCGTAACAAATGAAACACACTGGATCCACAGAGGACAACTA  750

seq1  AAAGCAACAGAGAACCTTCCATGGTGTGGGTCGGCCTGTTCTTCCTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAACAGAGAACCTTCCATGGTGTGGGTCGGCCTGTTCTTCCTTCTC  800

seq1  AGGGTGGGAGGACTGCACTCTGGCCTGGCCTCTCCAGTTCTGGAAACTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGGAGGACTGCACTCTGGCCTGGCCTCTCCAGTTCTGGAAACTGT  850

seq1  CACACTCTTTGGCCCCCAGCCACATCGCTGACTAGCCTCATCTCCTCTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCTTTGGCCCCCAGCCACATCGCTGACTAGCCTCATCTCCTCTCT  900

seq1  TTGGCACTCCCTCCTCATCTTATCAGGACCTTTGTGACAGCCCTGGGTCC  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTGGCACTCCCTCCTCATC-TATCAGGACCTTTGTGACAGCCCTGGGTCC  949

seq1  ACCCAGCTAATCCAGGGCAATTTCCCTGTCTCGGGATCACCCCTGTTGTG  1000
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  ACCCAGCTAATCCAGGGCAATTTCCCTGTCTC-GGATCACCCCTG-TGTG  997

seq1  GCACT-GTGCCCTCTGACCATGCAAGGCAGCTGGG-TCACAGAGTCTGAA  1048
      ||||| ||||||||||||||||||| ||||||||| ||||||||||||| 
seq2  GCACTGGTGCCCTCTGACCATGCAAAGCAGCTGGGTTCACAGAGTCTGAC  1047

seq1  CACAAAGACCTGGCCATCTCTGGTAGGCTCCTTGTTCTGTCGGCTACAGC  1098
      ||| |||||   ||||||||||||| |||||||||| |||| ||||  ||
seq2  CAC-AAGAC--TGCCATCTCTGGTA-GCTCCTTGTTTTGTC-GCTAACGC  1092

seq1  ACCAAAGA-TTCAGCGGTGTTGCCACCCTGTGACACGGGACACTTCCTCA  1147
      | |||||| |||||||| ||||| |||||||||| ||| || ||||||| 
seq2  A-CAAAGATTTCAGCGG-GTTGCTACCCTGTGAC-CGGTAC-CTTCCTCT  1138

seq1  AAGTTCCCAGGGTAGAGAAGGGGCAAAGGAAAACCTGCCCAGGAATTCAA  1197
      |||||||    || ||     |||||    ||||||| ||  ||||||||
seq2  AAGTTCC---AGTTGA----AGGCAA---GAAACCTGTCC-TGAATTCAA  1177

seq1  GGGGAAGCTGGATGGCC---AAAGGCGGAGT-TCAC  1229
      |||    |||||||  |   | ||||||||| ||||
seq2  GGGAGCTCTGGATGTACCTAAGAGGCGGAGTATCAC  1213