BAC Information

Click to search

BAC

Clone NameB6Ng01-106M06
Chromosome12 (Build37)17 (Build37)
Map Location 83,015,130 - 83,015,55227,984,618 - 27,984,775
singlet/doubletsingletsinglet
Overlap genePcnx
Upstream geneSfrs5, Slc10a1, Smoc1, Slc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9
Downstream geneSipa1l1, LOC432675, EG666911, Rgs6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106M06.bB6Ng01-106M06.g
ACCDH914413DH914414
length417901
definitionDH914413|Mus musculus domesticus DNA, BAC clone: B6Ng01-106M06, 5' end.DH914414|Mus musculus domesticus DNA, BAC clone: B6Ng01-106M06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(83,015,130 - 83,015,552)(27,984,618 - 27,984,775)
sequence
actagtctgttgtctagcttaggagtccacatgcttatttttgcagaggc
ctaggtagctctgcagctcatctgtcccctcggtacccagctctgttgtt
atggaggggaaggatctctaaactacttgtgagtggacatggctgtacca
gactgccgtgagtcctttacaaacacggtcagcctggattccacagttct
tgcttggttggttgtcttcatgtgcatttacccagctctcactccaggct
gttggtacatcacagatgagcccgttatgactttaaaaagagttgtagga
aacttacccacactcatagccaaattcaaactactatactactttaaaat
agtgtaaaaaatacttattgtttgtggatttgagttcgtgggtgtgagtg
tgagtatgggtggggga
gaattccaaactagagacaggcaggtggctcagtaggtaaagactcttgt
tactacacctgaggatctgtgtttgattccagagttccagttccatgcag
tggaaagagaggccaatgtccataagttgtcttctgacttccacatgcct
gctaatagtatgtgcgcgcgcgcgcccgcgcacacacacacacatacaca
cacacacacacacacacacacacacactaagcaagcaagcaagcaagcaa
gcaagcaagcaagcaagtaagtaagcaagcaagcaagcaaataaacaaat
aaactcacataagaattccaaagaagccaggcggtggtggcatacgcctt
taatcccagcattcaggaggcagaggcaggcagatttctgagtttgaggc
cagcctggtctacaaagtgagttccaggacagccagggctatacagagaa
accctatcttgaaaacacacacacacacacacacacacacacacacacac
acaaacaaacaaaaaatccaaacaaaaaaagaatttcaaagaattccaaa
gaatttgctgggtgtagtgacccctgcctattgtcctagcatcagaaaac
taaaagcatgaggattttgagttcaagtttaacctgaggtatatagtgag
tcactatttgaaaaaaaaggaaattaaactatagatagaaagatagatag
atagatagatagatgcatgcataaatacattcatagattcattgatagat
ggtagatagatagacagatagatagatgataggtagatagatggtagata
gatagatagatagatagacagacgatagataggtagatagctagatggta
gataggtagatagataggtaggtagggtagatagatagatagatggatgg
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_83015130_83015552
seq2: B6Ng01-106M06.b_43_465

seq1  GAATTCACTAGTCTGTTGTCTAGCTTAGGAGTCCACATGCTTATTTTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGTCTGTTGTCTAGCTTAGGAGTCCACATGCTTATTTTTGC  50

seq1  AGAGGCCTAGGTAGCTCTGCAGCTCATCTGTCCCCTCGGTACCCAGCTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCCTAGGTAGCTCTGCAGCTCATCTGTCCCCTCGGTACCCAGCTCT  100

seq1  GTTGTTATGGAGGGGAAGGATCTCTAAACTACTTGTGAGTGGACATGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTATGGAGGGGAAGGATCTCTAAACTACTTGTGAGTGGACATGGCT  150

seq1  GTACCAGACTGCCGTGAGTCCTTTACAAACACGGTCAGCCTGGATTCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGACTGCCGTGAGTCCTTTACAAACACGGTCAGCCTGGATTCCAC  200

seq1  AGTTCTTGCTTGGTTGGTTGTCTTCATGTGCATTTACCCAGCTCTCACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTGCTTGGTTGGTTGTCTTCATGTGCATTTACCCAGCTCTCACTC  250

seq1  CAGGCTGTTGGTACATCACAGATGAGCCCGTTATGACTTTAAAAAGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGTTGGTACATCACAGATGAGCCCGTTATGACTTTAAAAAGAGTT  300

seq1  GTAGGAAACTTACCCACACTCATAGCCAAATTCAAACTACTATACTACTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAAACTTACCCACACTCATAGCCAAATTCAAACTACTATACTACTT  350

seq1  TAAAATAGTGTAAAAAATACTTATTGTTTGTGGATTTGAGTTCGTGGGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGTGTAAAAAATACTTATTGTTTGTGGATTTGAGTTCGTGGGTG  400

seq1  TGAGTGTGAGTATGGGTGGGGGA  423
      |||||||||||||||||||||||
seq2  TGAGTGTGAGTATGGGTGGGGGA  423

seq1: chr17_27984618_27984775
seq2: B6Ng01-106M06.g_391_582

seq1  AGCCAGGC-ATGGTGGCGCACGCCTTTAATCCCAGCACTTGGGAGG-AGA  48
      ||||||||  |||||||  |||||||||||||||||| |  ||||| |||
seq2  AGCCAGGCGGTGGTGGCATACGCCTTTAATCCCAGCATTCAGGAGGCAGA  50

seq1  GGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTC  98
      ||||||| |||||||||||| |||||||||||||||||||||||||||||
seq2  GGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTTC  100

seq1  CAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGAAAA---------  139
      ||||||||||||||||||||||||||||||| |||||||||         
seq2  CAGGACAGCCAGGGCTATACAGAGAAACCCTATCTTGAAAACACACACAC  150

seq1  ----------------------ACA-AAAAACAAACAAAAAA  158
                            ||| | ||||||||||||||
seq2  ACACACACACACACACACACACACACACAAACAAACAAAAAA  192