BAC Information

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BAC

Clone NameB6Ng01-106O11
Chromosome12 (Build37)
Map Location 14,166,480 - 14,228,579
singlet/doubletdoublet
Overlap genenone
Upstream geneDdx1, LOC627199, LOC627189, LOC100043243, LOC100042396, LOC238091, EG633789, LOC668481, AW125753
Downstream geneLOC100043256, Map1lc3-ps7, LOC668492, LOC100042426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106O11.bB6Ng01-106O11.g
ACCDH914515DH914516
length6051,124
definitionDH914515|Mus musculus domesticus DNA, BAC clone: B6Ng01-106O11, 5' end.DH914516|Mus musculus domesticus DNA, BAC clone: B6Ng01-106O11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,166,480 - 14,167,085)(14,227,443 - 14,228,579)
sequence
gaattctgtcttattcatctttaacaatagtctgtattatcactaataat
aataatgattaatcataatttcactgtggagaagccatctgttctctttg
tagccttcataatatggacagagaaggctaggacatgaatgatgcagact
aaaagaagctaatggaaagctagtatttaaaagcacagagtagagtgtta
tcagctatgtgagtgttcaggttaaggctgttttgcaaggagactgcaca
gaacagggcatttctgagctggaaagggtgggaaaatgctatgttatgaa
tgcaccaaaacagttaaaatttggttgtgttaaaaatccaaagaagactc
cacctaaatgaaggacatgtttctccatggagtaagctatcagtgtgagt
tcttggctctaccttgtgctctttgcactctctctctctctctctctctc
tctctctctctctctctctctctctctgtctctctctctgtgtccatctc
catctccatctccatctatctttatatatgctttcttgaccttccgggtc
atgggtcacgcatgttgtcaaagacctctactcgtggaaatcatagtctc
tggga
gaattctctctgtgttaaagaaaggtcagtctaaattgggggcaagaaag
gggtgaccaatttcctctttgaaaataacaaaacattatgtattgagaga
aactgaactagaaaatccatggtttgattgcctcataccaaaaccagttc
atgctgtcattaccttgatggtgtctttaaaattacaagaacctaaatta
tatagcgttttatatccaaaaccacctgcaagtattaccagcttcttgcc
tagccattaccctttaagaccttaatggccctgcctacacaaacttcaga
gtacaatttctctgcttgctctcttcctcctaaaatgtccttctataaaa
tctgggttcaaatacacgcttttgcaattaaagaaactcatgcaggttct
gttgtaagacagtctccctctgactcaaacattaaaaatgtgattttttt
ttacatagcataaaaggaaatggttgctaagagttggaagactagagtct
acatccaggtgtccaatccctaggtacactgggatcatgaagtcaccttt
gtaataaaatttctttcagaaagatacaatagcaagaaatacaagatttc
agtcagacactgaaaagggatgagtagaaaaacaaagatggctgaagtta
ttagtgaaaacaagggagaaccaagaccatggaggccaaagagctaactt
ttgtacaatatctcctgttagtgtatagtaactctttagaaatcactata
ctatattttagtcattaatattattatattattgagccaacacagggtct
acgtttcttatataacttacacatacacacagagcccatgggtaatttta
tacactatttttaatatatgtcttgttttgactgtgacctgtcatatgag
atttgctataggatatatgtgtctgcttttaatggtgagtttcaaatttt
gaagcagtttgaacttggcatttgggaattaaggcttctgagtagttttt
aaattactgacattgttattttttatgaaatagtttatttattctttgaa
atttcataaaactatataaattattctgatatattttatctctctttctt
gccacctctctgattcctccctgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_14166480_14167085
seq2: B6Ng01-106O11.b_48_652

seq1  GAATTCTGTCTTATTCATCTTTAACAATAGTCTGTATTATCACTAATAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCTTATTCATCTTTAACAATAGTCTGTATTATCACTAATAAT  50

seq1  AATAATGATTAATCATAATTTCACTGTGGAGAAGCCATCTGTTCTCTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGATTAATCATAATTTCACTGTGGAGAAGCCATCTGTTCTCTTTG  100

seq1  TAGCCTTCATAATATGGACAGAGAAGGCTAGGACATGAATGATGCAGACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTCATAATATGGACAGAGAAGGCTAGGACATGAATGATGCAGACT  150

seq1  AAAAGAAGCTAATGGAAAGCTAGTATTTAAAAGCACAGAGTAGAGTGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGCTAATGGAAAGCTAGTATTTAAAAGCACAGAGTAGAGTGTTA  200

seq1  TCAGCTATGTGAGTGTTCAGGTTAAGGCTGTTTTGCAAGGAGACTGCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTATGTGAGTGTTCAGGTTAAGGCTGTTTTGCAAGGAGACTGCACA  250

seq1  GAACAGGGCATTTCTGAGCTGGAAAGGGTGGGAAAATGCTATGTTATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGGCATTTCTGAGCTGGAAAGGGTGGGAAAATGCTATGTTATGAA  300

seq1  TGCACCAAAACAGTTAAAATTTGGTTGTGTTAAAAATCCAAAGAAGACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACCAAAACAGTTAAAATTTGGTTGTGTTAAAAATCCAAAGAAGACTC  350

seq1  CACCTAAATGAAGGACATGTTTCTCCATGGAGTAAGCTATCAGTGTGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTAAATGAAGGACATGTTTCTCCATGGAGTAAGCTATCAGTGTGAGT  400

seq1  TCTTGGCTCTACCTTGTGCTCTTTGCACTCTCTCTCTCTCTCTCTCTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCTCTACCTTGTGCTCTTTGCACTCTCTCTCTCTCTCTCTCTCTC  450

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCCATTTTTATCTCTGTTTCCATCTC  500
      ||||||||||||||||||||||||||  | | | ||||||| ||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTCTGTCTCTCTCTCTGTGTCCATCTC  500

seq1  CGTCTCCCTCTCCCTCTCTCTTTCACACAGGCTTAGCTGACCTTCTGGGT  550
      | ||||| ||||| ||| ||||| | | | ||||   |||||||| ||||
seq2  CATCTCCATCTCCATCTATCTTT-ATATATGCTTTCTTGACCTTCCGGGT  549

seq1  CATGGGACATGCAAGTTGTCAAAGACCTCTACTCTTGGACATCAAAGTCT  600
      |||||| || ||| |||||||||||||||||||| |||| |||| |||||
seq2  CATGGGTCACGCATGTTGTCAAAGACCTCTACTCGTGGAAATCATAGTCT  599

seq1  CTGGGA  606
      ||||||
seq2  CTGGGA  605

seq1: chr12_14227443_14228579
seq2: B6Ng01-106O11.g_69_1192 (reverse)

seq1  ACAGGGAGG-ATCAGGAAGGAGGTGGGGGCAGAAAGGAGAAGATAAATAT  49
      ||||||||| |||||    |||||   ||||  || ||| ||||||| ||
seq2  ACAGGGAGGAATCAG---AGAGGT---GGCAAGAAAGAG-AGATAAA-AT  42

seq1  A-ATCAGAATATATTATATAGTTTTATGAAATTATCAAAGAATAAATAAA  98
      | |||||||||  |||||||||||||||||||| ||||||||||||| ||
seq2  ATATCAGAATAATTTATATAGTTTTATGAAATT-TCAAAGAATAAAT-AA  90

seq1  ACTATTTCATTAAAAAAATAAACAATGTCAGTAATTTAAAAAACCTACTC  148
      ||||||||||  ||||||| ||||||||||||||||||||||  ||||||
seq2  ACTATTTCAT--AAAAAAT-AACAATGTCAGTAATTTAAAAA--CTACTC  135

seq1  AGAAGCCTTAATTCCCAAATGCCAAGTTCAAACTGCTTCAAAATTTGAAA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCTTAATTCCCAAATGCCAAGTTCAAACTGCTTCAAAATTTGAAA  185

seq1  CTCACCATTAAAAGCAGACACATATATCCTATAGCAAATCTCATATGACA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCATTAAAAGCAGACACATATATCCTATAGCAAATCTCATATGACA  235

seq1  GGTCACAGTCAAAACAAGACATATATTAAAAATAGTGTATAAAATTACCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACAGTCAAAACAAGACATATATTAAAAATAGTGTATAAAATTACCC  285

seq1  ATGGGCTCTGTGTGTATGTGTAAGTTATATAAGAAACGTAGACCCTGTGT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTCTGTGTGTATGTGTAAGTTATATAAGAAACGTAGACCCTGTGT  335

seq1  TGGCTCAATAATATAATAATATTAATGACTAAAATATAGTATAGTGATTT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAATAATATAATAATATTAATGACTAAAATATAGTATAGTGATTT  385

seq1  CTAAAGAGTTACTATACACTAACAGGAGATATTGTACAAAAGTTAGCTCT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAGTTACTATACACTAACAGGAGATATTGTACAAAAGTTAGCTCT  435

seq1  TTGGCCTCCATGGTCTTGGTTCTCCCTTGTTTTCACTAATAACTTCAGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCTCCATGGTCTTGGTTCTCCCTTGTTTTCACTAATAACTTCAGCC  485

seq1  ATCTTTGTTTTTCTACTCATCCCTTTTCAGTGTCTGACTGAAATCTTGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGTTTTTCTACTCATCCCTTTTCAGTGTCTGACTGAAATCTTGTA  535

seq1  TTTCTTGCTATTGTATCTTTCTGAAAGAAATTTTATTACAAAGGTGACTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGCTATTGTATCTTTCTGAAAGAAATTTTATTACAAAGGTGACTT  585

seq1  CATGATCCCAGTGTACCTAGGGATTGGACACCTGGATGTAGACTCTAGTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGATCCCAGTGTACCTAGGGATTGGACACCTGGATGTAGACTCTAGTC  635

seq1  TTCCAACTCTTAGCAACCATTTCCTTTTATGCTATGTAAAAAAAAATCAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAACTCTTAGCAACCATTTCCTTTTATGCTATGTAAAAAAAAATCAC  685

seq1  ATTTTTAATGTTTGAGTCAGAGGGAGACTGTCTTACAACAGAACCTGCAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAATGTTTGAGTCAGAGGGAGACTGTCTTACAACAGAACCTGCAT  735

seq1  GAGTTTCTTTAATTGCAAAAGCGTGTATTTGAACCCAGATTTTATAGAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTCTTTAATTGCAAAAGCGTGTATTTGAACCCAGATTTTATAGAAG  785

seq1  GACATTTTAGGAGGAAGAGAGCAAGCAGAGAAATTGTACTCTGAAGTTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTTAGGAGGAAGAGAGCAAGCAGAGAAATTGTACTCTGAAGTTTG  835

seq1  TGTAGGCAGGGCCATTAAGGTCTTAAAGGGTAATGGCTAGGCAAGAAGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCAGGGCCATTAAGGTCTTAAAGGGTAATGGCTAGGCAAGAAGCT  885

seq1  GGTAATACTTGCAGGTGGTTTTGGATATAAAACGCTATATAATTTAGGTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATACTTGCAGGTGGTTTTGGATATAAAACGCTATATAATTTAGGTT  935

seq1  CTTGTAATTTTAAAGACACCATCAAGGTAATGACAGCATGAACTGGTTTT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTAATTTTAAAGACACCATCAAGGTAATGACAGCATGAACTGGTTTT  985

seq1  GGTATGAGGCAATCAAACCATGGATTTTCTAGTTCAGTTTCTCTCAATAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGAGGCAATCAAACCATGGATTTTCTAGTTCAGTTTCTCTCAATAC  1035

seq1  ATAATGTTTTGTTATTTTCAAAGAGGAAATTGGTCACCCCTTTCTTGCCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTTTTGTTATTTTCAAAGAGGAAATTGGTCACCCCTTTCTTGCCC  1085

seq1  CCAATTTAGACTGACCTTTCTTTAACACAGAGAGAATTC  1137
      |||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTAGACTGACCTTTCTTTAACACAGAGAGAATTC  1124