BAC Information

Click to search

BAC

Clone NameB6Ng01-107G04
Chromosome12 (Build37)
Map Location 60,582,563 - 60,762,633
singlet/doubletdoublet
Overlap geneLOC665644
Upstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639
Downstream geneEG622488, LOC665665, Ppia-ps12_475.1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107G04.bB6Ng01-107G04.g
ACCDH914867DH914868
length1,0401,006
definitionDH914867|Mus musculus domesticus DNA, BAC clone: B6Ng01-107G04, 5' end.DH914868|Mus musculus domesticus DNA, BAC clone: B6Ng01-107G04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,582,563 - 60,583,614)(60,761,631 - 60,762,633)
sequence
gaattcacacacacacacacacacacacacacacacacacacacacgcac
acacacacgcacacacacatacacattttataaaaaaatcaactttatta
tatatgttggctgtataactatcctctaaaattttttaaatttaattaaa
atataattacactatttccttcttctcactcctcccttcaaatcctccca
tgttcctcccttccaagtctatttcttcttattccttaacgattattgtt
acatgtatgtggcactaagcatatagacaaatcctgttcatttattgttg
cttgtgtgtatgtttttagggctgagcatttgggataaatagctcttcag
gaagctccatccttagggaagggaagttccctctaacagcgctcttcaat
tgcctagagttcttcatctagggatagggacttgtgtcattttctccttt
cacgttggcatgtcaactcttgtgattgctcaggtcttgcttagacaaac
atattgttgatatttcatgggtgtagcttcctgtcatttctggtggacac
agtctctcgaaaggcatcctggtcttctgtctcttatagtctttctaccc
actctctttgatgttttctgttttctgagtcttcagtgtaggaactgtgt
tggagataaactggttggggtttgttagctccaggtcgctgttctctgca
tttgactagttgtggctttctgtgacggcctccttgtgctgcaaacagaa
gcttctttgatgagtgagggtcaagagtgtcacttatctgtgggaataag
gataagtatttagattgaagttaaggattatactggtttagggaagtaca
gtagtattttctcctccattcaaaataaattataatatgggcttgatctg
tagtataccttttgttttataatatttagtttagaattataattacatta
ttttctcatttccttttcccatgcctccaaccctccatgcctgcttcctc
ttgatctctcaaattgtggcttttctctaattgtgcttta
gaattctctaaactcactaataaataaaaatgaaagagctaggagaaata
tttgaacaactgcttcaatcaaagaaggcttacagatagcaaatgaataa
aatgagaagaaatgcagcacaattcattagagaatgcagtttaaagtggg
agatactgttcccctactcaaaagggaaaaggccataaagctatttcagc
agcattgtgttgctgagaatacagagacaccatagtattcacacttcagt
tctgggactggcaaactgtgtgttggctttaggagaaagtctgcagattt
ccaataaaggaaaaatatactgcttttgtatggtgtgtaacacagtcatc
ccacttctacattatttacccaagaaaattgaaaaccccgctaacaccca
aactggtatgcagacatttacattcagctcctttgtgatcattccaaaga
gtgaaacaccagtgtatttcacatgctaactggaaaggcttggtggcaca
tctgtggagccacaaggtactgaaacacacagcagcacagacaaatccga
gaaacactgtgaaagaagcagacccaaagtgtgataggtttccacttgtc
acatcctggacaaatcagcctctgtgtcaaggaagaacatggtgttgttg
tcagggtcaagggtgggagtgacaagggaaagaagagggatgggtggggc
aacgaacctttcgtgtctgggtgcaatggctacttgacagatcacttgtt
aaaacccttacatctgtacatgagagagagttaacttggtttgtgcaaat
ctaaaagtgcacacgaaatttttaaaagaaacactcatagtgtcctcttg
ctcttgggagtaggaggtaacagattgaattcttgggatacgacagccag
taatcacaattatctatgactgaaagagatatttactaaggtgcttgcat
ttttcgatagctgactggtttgtctgcagtaaattttacatcaaccagta
taattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_60582563_60583614
seq2: B6Ng01-107G04.b_44_1083

seq1  GAATTCACACACACACACACACACACACACACACACACACACACACGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACACACACACACACACACACACACACACACACACACACGCAC  50

seq1  ACACACACGCACACACACATACACATTTTATAAAAAAATCAACTTTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACGCACACACACATACACATTTTATAAAAAAATCAACTTTATTA  100

seq1  TATATGTTGGCTGTATAACTATCCTCTAAAATTTTTTAAATTTAATTAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATGTTGGCTGTATAACTATCCTCTAAAATTTTTTAAATTTAATTAAA  150

seq1  ATATAATTACACTATTTCCTTCTTCTCACTCCTCCCTTCAAATCCTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATTACACTATTTCCTTCTTCTCACTCCTCCCTTCAAATCCTCCCA  200

seq1  TGTTCCTCCCTTCCAAGTCTATTTCTTCTTATTCCTTAACGATTATTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTCCCTTCCAAGTCTATTTCTTCTTATTCCTTAACGATTATTGTT  250

seq1  ACATGTATGTGGCACTAAGCATATAGACAAATCCTGTTCATTTATTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATGTGGCACTAAGCATATAGACAAATCCTGTTCATTTATTGTTG  300

seq1  CTTGTGTGTATGTTTTTAGGGCTGAGCATTTGGGATAAATAGCTCTTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTGTATGTTTTTAGGGCTGAGCATTTGGGATAAATAGCTCTTCAG  350

seq1  GAAGCTCCATCCTTAGGGAAGGGAAGTTCCCTCTAACAGCGCTCTTCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTCCATCCTTAGGGAAGGGAAGTTCCCTCTAACAGCGCTCTTCAAT  400

seq1  TGCCTAGAGTTCTTCATCTAGGGATAGGGACTTGTGTCATTTTCTCCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGAGTTCTTCATCTAGGGATAGGGACTTGTGTCATTTTCTCCTTT  450

seq1  CACGTTGGCATGTCAACTCTTGTGATTGCTCAGGTCTTGCTTAGACAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTTGGCATGTCAACTCTTGTGATTGCTCAGGTCTTGCTTAGACAAAC  500

seq1  ATATTGTTGATATTTCATGGGTGTAGCTTCCTGTCATTTCTGGTGGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTTGATATTTCATGGGTGTAGCTTCCTGTCATTTCTGGTGGACAC  550

seq1  AGTCTCTCGAAAGGCATCCTGGTCTTCTGTCTCTTATAGTCTTTCTACCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTCGAAAGGCATCCTGGTCTTCTGTCTCTTATAGTCTTTCTACCC  600

seq1  ACTCTCTTTGATGTTTTCTGTTTTCTGAGTCTTCAGTGTAGGAACTGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCTTTGATGTTTTCTGTTTTCTGAGTCTTCAGTGTAGGAACTGTGT  650

seq1  TGGAGATAAACTGGTTGGGGTTTGTTAGCTCCAGGTCGCTGTTCTCTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATAAACTGGTTGGGGTTTGTTAGCTCCAGGTCGCTGTTCTCTGCA  700

seq1  TTTGACTAGTTGTGGCTTTCTGTGACGGCCTCCTTGTGCTGCAAACAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTAGTTGTGGCTTTCTGTGACGGCCTCCTTGTGCTGCAAACAGAA  750

seq1  GCTTCTTTGATGAGTGAGGGTCAAGAGTGTCACTTATCTGTGGGAATAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTTGATGAGTGAGGGTCAAGAGTGTCACTTATCTGTGGGAATAAG  800

seq1  GATAAGTATTTAGATTGAAGTTAAGGATTATACTGGTTTAGGGAAGTACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTATTTAGATTGAAGTTAAGGATTATACTGGTTTAGGGAAGTACA  850

seq1  GTAGTATTTTCTCCTCCATTCAAAATTAATTATAATATGGGCTTGATCTG  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTAGTATTTTCTCCTCCATTCAAAATAAATTATAATATGGGCTTGATCTG  900

seq1  TAGTATACCTTTTGTTTTTATAATATTTAGTTTTAGAAATTATAATTACA  950
      |||||||||||||| ||||||||||||||| ||||| |||||||||||||
seq2  TAGTATACCTTTTG-TTTTATAATATTTAG-TTTAG-AATTATAATTACA  947

seq1  TTATTTTCTCATTTCCTTTTCCCATGCCTCCAACCCCTCCCATGCCTGCT  1000
      ||||||||||||||||||||||||||||||||||||   |||||||||||
seq2  TTATTTTCTCATTTCCTTTTCCCATGCCTCCAACCC--TCCATGCCTGCT  995

seq1  TCCTCCTTGATCTCTCAAATTTGTGGCCTTTTTCTCCTTAATTGTTGCTT  1050
      |||| |||||||||||||| |||||||  |||||||  |||||| |||||
seq2  TCCT-CTTGATCTCTCAAA-TTGTGGC--TTTTCTC--TAATTG-TGCTT  1038

seq1  TA  1052
      ||
seq2  TA  1040

seq1: chr12_60761631_60762633
seq2: B6Ng01-107G04.g_66_1059 (reverse)

seq1  TTGATGTTAAAATTTACTGCAGACAAACCAGTTCAGCTATTCGAAAAATG  50
      |||||| |||||||||||||||||||||||| ||||||| ||||||||||
seq2  TTGATG-TAAAATTTACTGCAGACAAACCAG-TCAGCTA-TCGAAAAATG  47

seq1  CAAGCACCTTAGTAAATTATCTTCTTTTCAGTTCATAGATAATTGTTGAT  100
      |||||||||||||||| |||||   |||||| ||||||||||||| ||||
seq2  CAAGCACCTTAGTAAA-TATCT--CTTTCAG-TCATAGATAATTG-TGAT  92

seq1  TACTGGCTGTCGTATCCCAAGAATTCAATCTGTTACCTCCTACTCCCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCTGTCGTATCCCAAGAATTCAATCTGTTACCTCCTACTCCCAAG  142

seq1  AGCAAGAGGACACTATGAGTGTTTCTTTTTAAAAATTTCGTGTGCACTTT  200
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGCAAGAGGACACTATGAGTGTTTC-TTTTAAAAATTTCGTGTGCACTTT  191

seq1  TAGATTTGCACAAACCAAGTTAACTCTCTCTCATGTACAGATGTAAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTGCACAAACCAAGTTAACTCTCTCTCATGTACAGATGTAAGGGT  241

seq1  TTTAACAAGTGATCTGTCAAGTAGCCATTGCACCCAGACACGAAAGGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAAGTGATCTGTCAAGTAGCCATTGCACCCAGACACGAAAGGTTC  291

seq1  GTTGCCCCACCCATCCCTCTTCTTTCCCTTGTCACTCCCACCCTTGACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCCCCACCCATCCCTCTTCTTTCCCTTGTCACTCCCACCCTTGACCC  341

seq1  TGACAACAACACCATGTTCTTCCTTGACACAGAGGCTGATTTGTCCAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAACAACACCATGTTCTTCCTTGACACAGAGGCTGATTTGTCCAGGA  391

seq1  TGTGACAAGTGGAAACCTATCACACTTTGGGTCTGCTTCTTTCACAGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACAAGTGGAAACCTATCACACTTTGGGTCTGCTTCTTTCACAGTGT  441

seq1  TTCTCGGATTTGTCTGTGCTGCTGTGTGTTTCAGTACCTTGTGGCTCCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGGATTTGTCTGTGCTGCTGTGTGTTTCAGTACCTTGTGGCTCCAC  491

seq1  AGATGTGCCACCAAGCCTTTCCAGTTAGCATGTGAAATACACTGGTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGCCACCAAGCCTTTCCAGTTAGCATGTGAAATACACTGGTGTTT  541

seq1  CACTCTTTGGAATGATCACAAAGGAGCTGAATGTAAATGTCTGCATACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTTGGAATGATCACAAAGGAGCTGAATGTAAATGTCTGCATACCA  591

seq1  GTTTGGGTGTTAGCGGGGTTTTCAATTTTCTTGGGTAAATAATGTAGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGGTGTTAGCGGGGTTTTCAATTTTCTTGGGTAAATAATGTAGAAG  641

seq1  TGGGATGACTGTGTTACACACCATACAAAAGCAGTATATTTTTCCTTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGACTGTGTTACACACCATACAAAAGCAGTATATTTTTCCTTTAT  691

seq1  TGGAAATCTGCAGACTTTCTCCTAAAGCCAACACACAGTTTGCCAGTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCTGCAGACTTTCTCCTAAAGCCAACACACAGTTTGCCAGTCCC  741

seq1  AGAACTGAAGTGTGAATACTATGGTGTCTCTGTATTCTCAGCAACACAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGAAGTGTGAATACTATGGTGTCTCTGTATTCTCAGCAACACAAT  791

seq1  GCTGCTGAAATAGCTTTATGGCCTTTTCCCTTTTGAGTAGGGGAACAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGAAATAGCTTTATGGCCTTTTCCCTTTTGAGTAGGGGAACAGTA  841

seq1  TCTCCCACTTTAAACTGCATTCTCTAATGAATTGTGCTGCATTTCTTCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCACTTTAAACTGCATTCTCTAATGAATTGTGCTGCATTTCTTCTC  891

seq1  ATTTTATTCATTTGCTATCTGTAAGCCTTCTTTGATTGAAGCAGTTGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTCATTTGCTATCTGTAAGCCTTCTTTGATTGAAGCAGTTGTTC  941

seq1  AAATATTTCTCCTAGCTCTTTCATTTTTATTTATTAGTGAGTTTAGAGAA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTCTCCTAGCTCTTTCATTTTTATTTATTAGTGAGTTTAGAGAA  991

seq1  TTC  1003
      |||
seq2  TTC  994