BAC Information

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BAC

Clone NameB6Ng01-108E03
Chromosome12 (Build37)
Map Location 27,291,126 - 27,459,269
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042974, LOC668726, Rnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
Downstream geneSox11, LOC100043009
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108E03.bB6Ng01-108E03.g
ACCDH915489DH915490
length1,159913
definitionDH915489|Mus musculus domesticus DNA, BAC clone: B6Ng01-108E03, 5' end.DH915490|Mus musculus domesticus DNA, BAC clone: B6Ng01-108E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,291,126 - 27,292,294)(27,458,359 - 27,459,269)
sequence
gaattctgttatgcatgttgtaataaaaatggtttattgggctatcaaat
gcaggcatgggagccaaaactgcagcctctgctgggtcttctcatacaag
aatctacctgtatatacctctgttcttctggactattctgaaggacttac
actttttacttaaattggtaccttttgagatgccgatccttggacatgta
aatttttctttcggcctccagattcctaatctgagaaagcaaagttggtc
cacacatactgattttggggaaactggttgtttttttgtttttttgtttt
tgtttttttttcttctcaaatagcagaaagttcatgattccttttgggga
tgaagtttaaaacctaattagacaggagatgaagtttaagacctagttag
gcaggattaaccttcgtttcttgctgtgtagaaacaaagggtgcgtgctt
tcgacatcttcagaatcagaaaagaagggcgtgcccaggaaatgaacatc
tatcattaggttcagggtcagctccaaggagaagccactggccaaagctg
agacttgtggaggatctgaacttcaaatgacaatgacagtgacagctcag
gtgggaccaagaaaataaagagaaaatctgccaggtcattgacttcagcc
agttagaagcatatggtagtacctgtgttatcttggttcagatggtttct
gctgagtttctcagcacatagcaaatgatttttttccttcatggcatatt
gcagtgagagacagtgagaatatatgaatcttctgttttctatcaaatct
gtacaaatagcccaaaccaatgactctttcccgttgctacagtggctgct
acatagtgaccttgtcattctatcctctgtacttgtgggttgaccttctg
gtttaagtcactaattcagatgaaagtaaaagatggtctcttattcattt
ttctattttactgtagtgcagattatgtttttcttcaggagcttgtatgc
atatgtgtgcatacatgtatttctatacaggtattttactacatgtatgt
agtattccacacatttgtacaatgtgtacaaggtgtacatgtggtttaca
tgtaatctatgtgtgcatgcaaggcaagacaacctcgaatgcttccttct
ctttcaggt
gaattccaatacactgcaattcaaatgcacaatacatgcaaattcaaata
tccagcaattcaaatacacagcatacaaattcaagagtgtagagaatatt
tactaccaagttcctgtttataaaaatagaggcggttgttgttattccca
ttatctacacagatggtgagtgggctgttgcaaacccatgaaaggaagtt
ctcccataagtgggaatattgtggttctcacccagggtccccatacccac
agttgttggcttcagagaaaagagagtactgcttgtgtcagactcgctgt
gtgaggaacaggaggtggcttttacatgcaattctgcttgatatatattt
cataggtggtatgaagtaggattagggaggtgatttcatcaaacgcctct
tgtccttaggtcattgatcacccaggtccattgtagcaaactgccccaac
tcaatggcacataataacagaaacttgttttcccatggttctgatattat
gggaagcccaaaagagatgacctctcatacaattcattggcaattaacgt
ctttattctagctagctgggattacactcaaatgattgggacctaattat
agtccacagtattgagagtactagttcttgacaagtgggtcatgacttct
tggggtggggtgtcaaatgacccaaccattacctaagaccattagaaaac
acaggtattcaccttacaattaatagaagcagcaaaattagagctataaa
gtggaaacaaaactaattttattgctggagtcaccacaacatgaggaact
atattagagggttgcggcttcaggaaagttgagaaccatagattagagaa
agggttttaagacacaactacatactaaccaccactctgcagctccaggg
agatttgactaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_27291126_27292294
seq2: B6Ng01-108E03.b_47_1205

seq1  GAATTCTGTTATGCATGTTGTAATAAAAATGGTTTATTGGGCTATCAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTATGCATGTTGTAATAAAAATGGTTTATTGGGCTATCAAAT  50

seq1  GCAGGCATGGGAGCCAAAACTGCAGCCTCTGCTGGGTCTTCTCATACAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCATGGGAGCCAAAACTGCAGCCTCTGCTGGGTCTTCTCATACAAG  100

seq1  AATCTACCTGTATATACCTCTGTTCTTCTGGACTATTCTGAAGGACTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTACCTGTATATACCTCTGTTCTTCTGGACTATTCTGAAGGACTTAC  150

seq1  ACTTTTTACTTAAATTGGTACCTTTTGAGATGCCGATCCTTGGACATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTACTTAAATTGGTACCTTTTGAGATGCCGATCCTTGGACATGTA  200

seq1  AATTTTTCTTTCGGCCTCCAGATTCCTAATCTGAGAAAGCAAAGTTGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTCTTTCGGCCTCCAGATTCCTAATCTGAGAAAGCAAAGTTGGTC  250

seq1  CACACATACTGATTTTGGGGAAACTGGTTGTTTTTTTGTTTTTTTGTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACTGATTTTGGGGAAACTGGTTGTTTTTTTGTTTTTTTGTTTT  300

seq1  TGTTTTTTTTTCTTCTCAAATAGCAGAAAGTTCATGATTCCTTTTGGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTTTCTTCTCAAATAGCAGAAAGTTCATGATTCCTTTTGGGGA  350

seq1  TGAAGTTTAAAACCTAATTAGACAGGAGATGAAGTTTAAGACCTAGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTTAAAACCTAATTAGACAGGAGATGAAGTTTAAGACCTAGTTAG  400

seq1  GCAGGATTAACCTTCGTTTCTTGCTGTGTAGAAACAAAGGGTGCGTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATTAACCTTCGTTTCTTGCTGTGTAGAAACAAAGGGTGCGTGCTT  450

seq1  TCGACATCTTCAGAATCAGAAAAGAAGGGCGTGCCCAGGAAATGAACATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGACATCTTCAGAATCAGAAAAGAAGGGCGTGCCCAGGAAATGAACATC  500

seq1  TATCATTAGGTTCAGGGTCAGCTCCAAGGAGAAGCCACTGGCCAAAGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTAGGTTCAGGGTCAGCTCCAAGGAGAAGCCACTGGCCAAAGCTG  550

seq1  AGACTTGTGGAGGATCTGAACTTCAAATGACAATGACAGTGACAGCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTGTGGAGGATCTGAACTTCAAATGACAATGACAGTGACAGCTCAG  600

seq1  GTGGGACCAAGAAAATAAAGAGAAAATCTGCCAGGTCATTGACTTCAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGACCAAGAAAATAAAGAGAAAATCTGCCAGGTCATTGACTTCAGCC  650

seq1  AGTTAGAAGCATATGGTAGTACCTGTGTTATCTTGGTTCAGATGGTTTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGAAGCATATGGTAGTACCTGTGTTATCTTGGTTCAGATGGTTTCT  700

seq1  GCTGAGTTTCTCAGCACATAGCAAATGATTTTTTTCCTTCATGGCATATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGTTTCTCAGCACATAGCAAATGATTTTTTTCCTTCATGGCATATT  750

seq1  GCAGTGAGAGACAGTGAGAATATATGAATCTTCTGTTTTCTATCAAATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGAGAGACAGTGAGAATATATGAATCTTCTGTTTTCTATCAAATCT  800

seq1  GTACAAATAGCCCAAACCAATGACTCTTTCCCGTTGCTACAGTGGCTGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAATAGCCCAAACCAATGACTCTTTCCCGTTGCTACAGTGGCTGCT  850

seq1  ACATAGTGACCTTGTCATTCTATCCTCTGTACTTGTGGGTTGACCTTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAGTGACCTTGTCATTCTATCCTCTGTACTTGTGGGTTGACCTTCTG  900

seq1  GTTTAAGTCACTAATTCAGGATGAAAGTTAAAAAGATGGTCTCTTATTCA  950
      |||||||||||||||||| |||||||||  ||||||||||||||||||||
seq2  GTTTAAGTCACTAATTCA-GATGAAAGT--AAAAGATGGTCTCTTATTCA  947

seq1  TTTTTCTATTTTACTGTAGTGCAGAATTATGTTTTTTCCTTCAGGAGCTT  1000
      |||||||||||||||||||||||| |||||||||||  ||||||||||||
seq2  TTTTTCTATTTTACTGTAGTGCAG-ATTATGTTTTT--CTTCAGGAGCTT  994

seq1  GTATGCATATGTGTGCATACATGTATTTCTATACAGGTA-TTTACTACAT  1049
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GTATGCATATGTGTGCATACATGTATTTCTATACAGGTATTTTACTACAT  1044

seq1  GTATGTAGTATT-CACACATATGTACATATGTGTAC-AGGTGTACATGT-  1096
      |||||||||||| ||||||| |||||| |||||||| |||||||||||| 
seq2  GTATGTAGTATTCCACACATTTGTACA-ATGTGTACAAGGTGTACATGTG  1093

seq1  GTCTACATGTATACCTATGTGTGCATGCAGAGGCCAAAGAACAACCTCAG  1146
      || |||||||| | ||||||||||||||| ||||  ||| ||||||||  
seq2  GTTTACATGTA-ATCTATGTGTGCATGCA-AGGC--AAG-ACAACCTCGA  1138

seq1  ATGCTTCTCTTCTCTCTTCAGGT  1169
      ||||||| ||||||| |||||||
seq2  ATGCTTC-CTTCTCT-TTCAGGT  1159

seq1: chr12_27458359_27459269
seq2: B6Ng01-108E03.g_67_972 (reverse)

seq1  AAATCTCCCTGTGTAGCTGCAGAGTGGTGGTTAGTATGTAGTTTGTGTCT  50
      |||||||||  || ||||||||||||||||||||||||||| ||||||| 
seq2  AAATCTCCC--TGGAGCTGCAGAGTGGTGGTTAGTATGTAG-TTGTGTC-  46

seq1  TTAAAAACCTTTCTCTAATCTATTGGTTCTCAACTTTCCTGAAGCCGCAA  100
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  TTAAAACCCTTTCTCTAATCTA-TGGTTCTCAACTTTCCTGAAGCCGCAA  95

seq1  CCCTCTAATATAGTTCCTCATGTTGTGGTGACTCCAGCAATAAAATTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTAATATAGTTCCTCATGTTGTGGTGACTCCAGCAATAAAATTAGT  145

seq1  TTTGTTTCCACTTTATAGCTCTAATTTTGCTGCTTCTATTAATTGTAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTCCACTTTATAGCTCTAATTTTGCTGCTTCTATTAATTGTAAGG  195

seq1  TGAATACCTGTGTTTTCTAATGGTCTTAGGTAATGGTTGGGTCATTTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATACCTGTGTTTTCTAATGGTCTTAGGTAATGGTTGGGTCATTTGAC  245

seq1  ACCCCACCCCAAGAAGTCATGACCCACTTGTCAAGAACTAGTACTCTCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCACCCCAAGAAGTCATGACCCACTTGTCAAGAACTAGTACTCTCAA  295

seq1  TACTGTGGACTATAATTAGGTCCCAATCATTTGAGTGTAATCCCAGCTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGGACTATAATTAGGTCCCAATCATTTGAGTGTAATCCCAGCTAG  345

seq1  CTAGAATAAAGACGTTAATTGCCAATGAATTGTATGAGAGGTCATCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATAAAGACGTTAATTGCCAATGAATTGTATGAGAGGTCATCTCTT  395

seq1  TTGGGCTTCCCATAATATCAGAACCATGGGAAAACAAGTTTCTGTTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTTCCCATAATATCAGAACCATGGGAAAACAAGTTTCTGTTATTA  445

seq1  TGTGCCATTGAGTTGGGGCAGTTTGCTACAATGGACCTGGGTGATCAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCATTGAGTTGGGGCAGTTTGCTACAATGGACCTGGGTGATCAATG  495

seq1  ACCTAAGGACAAGAGGCGTTTGATGAAATCACCTCCCTAATCCTACTTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGGACAAGAGGCGTTTGATGAAATCACCTCCCTAATCCTACTTCA  545

seq1  TACCACCTATGAAATATATATCAAGCAGAATTGCATGTAAAAGCCACCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCTATGAAATATATATCAAGCAGAATTGCATGTAAAAGCCACCTC  595

seq1  CTGTTCCTCACACAGCGAGTCTGACACAAGCAGTACTCTCTTTTCTCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCTCACACAGCGAGTCTGACACAAGCAGTACTCTCTTTTCTCTGA  645

seq1  AGCCAACAACTGTGGGTATGGGGACCCTGGGTGAGAACCACAATATTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACAACTGTGGGTATGGGGACCCTGGGTGAGAACCACAATATTCCC  695

seq1  ACTTATGGGAGAACTTCCTTTCATGGGTTTGCAACAGCCCACTCACCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATGGGAGAACTTCCTTTCATGGGTTTGCAACAGCCCACTCACCATC  745

seq1  TGTGTAGATAATGGGAATAACAACAACCGCCTCTATTTTTATAAACAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGATAATGGGAATAACAACAACCGCCTCTATTTTTATAAACAGGA  795

seq1  ACTTGGTAGTAAATATTCTCTACACTCTTGAATTTGTATGCTGTGTATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGTAGTAAATATTCTCTACACTCTTGAATTTGTATGCTGTGTATTT  845

seq1  GAATTGCTGGATATTTGAATTTGCATGTATTGTGCATTTGAATTGCAGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCTGGATATTTGAATTTGCATGTATTGTGCATTTGAATTGCAGTG  895

seq1  TATTGGAATTC  911
      |||||||||||
seq2  TATTGGAATTC  906