BAC Information

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BAC

Clone NameB6Ng01-109F06
Chromosome12 (Build37)
Map Location 26,693,353 - 26,866,383
singlet/doubletdoublet
Overlap genenone
Upstream geneC330002I19Rik, Id2, LOC100042973, LOC100042974, LOC668726
Downstream geneRnf144, Rsad2, Tyki, LOC668731, 1700020D12Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109F06.bB6Ng01-109F06.g
ACCDH916264DH916265
length1,144892
definitionDH916264|Mus musculus domesticus DNA, BAC clone: B6Ng01-109F06, 5' end.DH916265|Mus musculus domesticus DNA, BAC clone: B6Ng01-109F06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,693,353 - 26,694,518)(26,865,491 - 26,866,383)
sequence
gaattcacagtatttgtgagttctacaaaacagcaatctggaaatcttaa
ttccaaaatatcaagatgggagctgagttcaagccttagcagctcataaa
agcaagcatgttggcacctgcctctaatcctgacacacaggagaaagaga
ctgcatgctcaagagttcaagatttttaactgctcagcaaactcagtaac
agcctggggtatgtgaaatcccattggaaaaatatttttaaaaattagta
taacaaagcagccagggtgatcaaatggaattaaaggtaattctgtgttg
cctttctgtgtgtctcgtggtcagagagaacaatggacacccacctagca
gaactcacaagctaagacttcaagggaaataactgagctgtgctgaaatt
aattgtacagaaaccacagaacccagtaagtgaaatgcaagctggagaaa
ggagtttcatgactgggcccaaaaagggagctaacgagtgtgaaggcaga
tatgcaggaattgtgtcaagtttaaccgagtgtggcaaaagcagaaaatg
gagataaaagcatacttgatggatggctgtcctgccacatcacagaaagg
ctgatcatagagttggggaggcaatgtcaccattgataaagacaaaatgt
tttcagactcaaccttgtctgtaatcctccaaaggcagaaaagtctagca
cacactaggaagaactggaaaaaaaaaaaaaaaaagaagagtttcagtaa
gatgtatgtgctaagcaaatgtgaaagatgaaagcacggagatttctcac
cattctgaagacaatgaggaatgacaattcagctttctaggaacagcagt
ttaggctgagagttgtctactgaccgttgaataaatactagggaatgtgt
ctttaaaatgggatgagataaaaaatgcctaagtagtgaaatcatacaca
caaaagcaaattgtgaaatttgagagctatttcaaatgattgttattttt
aacacttcaagaactgatgagattttcagttacaacctgataatggtatc
attttattagaacttcaaaatacatttcagcaagaagacatttataccat
gtgaggactcttatcagaatgaagccaagagaaatatatatgta
gaattcttctgtggaaggaaaaatgaaatctctctgcttccctcttgttt
ttattgttttttgtttttgttttcatcttctacctcttttctttattcaa
catacattttgtatatccaaagacaacaatgttttaggcctgggatgaga
agatggaaagtcaaggtcttcactcgcccccaccccagaagcttccacag
aaggagcaagaaaacccaaaatatgtatctcagtttttttttttttcatc
ttggcatttttatgggcagagcagagattgttctgccatggtgctggcga
tgccttcccttctggctctcgcagcctttgtttttggctcccaagagata
cccccctccccccatctctgtgtgtgtgtagtttaaagtgcagtgaaccg
cacactgaagttctttctctctgcagattttgtagatgtgacatctcagc
ccacacagcccacctgctccagtctctctttcttctttaacaactggtgt
ttggaacagcggtgctgactctggaggagttagcaaagcgtgaggcagcc
agagaagcccagagtactcagtctgtgcagatcaatttggagccagctgg
ccaggtgttgagatcaagaccgcatgtccatcagaaagaaggtcacaagt
cctggcatggccactgctagcgtatcattcttaataagtacagaaaattc
tggaaatgtagttgttttaagaacagtgtaaggaagtggaagccttcctg
ggatgcaggtgtgtggttaatactttgtggtttgtgtgtggttaaaactt
tggtttttttttttatggctttcagcagcaattttggttgtttctttttc
atgtatatatatatatatgtataatgtgtgtatgtgtgaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_26693353_26694518
seq2: B6Ng01-109F06.b_47_1190

seq1  GAATTCACAGTATTTGTGAGTTCTACAAAACAGCAATCTGGAAATCTTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTATTTGTGAGTTCTACAAAACAGCAATCTGGAAATCTTAA  50

seq1  TTCCAAAATATCAAGATGGGAGCTGAGTTCAAGCCTTAGCAGCTCATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAATATCAAGATGGGAGCTGAGTTCAAGCCTTAGCAGCTCATAAA  100

seq1  AGCAAGCATGTTGGCACCTGCCTCTAATCCTGACACACAGGAGAAAGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGCATGTTGGCACCTGCCTCTAATCCTGACACACAGGAGAAAGAGA  150

seq1  CTGCATGCTCAAGAGTTCAAGATTTTTAACTGCTCAGCAAACTCAGTAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGCTCAAGAGTTCAAGATTTTTAACTGCTCAGCAAACTCAGTAAC  200

seq1  AGCCTGGGGTATGTGAAATCCCATTGGAAAAATATTTTTAAAAATTAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGGTATGTGAAATCCCATTGGAAAAATATTTTTAAAAATTAGTA  250

seq1  TAACAAAGCAGCCAGGGTGATCAAATGGAATTAAAGGTAATTCTGTGTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGCAGCCAGGGTGATCAAATGGAATTAAAGGTAATTCTGTGTTG  300

seq1  CCTTTCTGTGTGTCTCGTGGTCAGAGAGAACAATGGACACCCACCTAGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTCTGTGTGTCTCGTGGTCAGAGAGAACAATGGACACCCACCTAGCA  350

seq1  GAACTCACAAGCTAAGACTTCAAGGGAAATAACTGAGCTGTGCTGAAATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCACAAGCTAAGACTTCAAGGGAAATAACTGAGCTGTGCTGAAATT  400

seq1  AATTGTACAGAAACCACAGAACCCAGTAAGTGAAATGCAAGCTGGAGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTACAGAAACCACAGAACCCAGTAAGTGAAATGCAAGCTGGAGAAA  450

seq1  GGAGTTTCATGACTGGGCCCAAAAAGGGAGCTAACGAGTGTGAAGGCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTTCATGACTGGGCCCAAAAAGGGAGCTAACGAGTGTGAAGGCAGA  500

seq1  TATGCAGGAATTGTGTCAAGTTTAACCGAGTGTGGCAAAAGCAGAAAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGGAATTGTGTCAAGTTTAACCGAGTGTGGCAAAAGCAGAAAATG  550

seq1  GAGATAAAAGCATACTTGATGGATGGCTGTCCTGCCACATCACAGAAAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATAAAAGCATACTTGATGGATGGCTGTCCTGCCACATCACAGAAAGG  600

seq1  CTGATCATAGAGTTGGGGAGGCAATGTCACCATTGATAAAGACAAAATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATCATAGAGTTGGGGAGGCAATGTCACCATTGATAAAGACAAAATGT  650

seq1  TTTCAGACTCAACCTTGTCTGTAATCCTCCAAAGGCAGAAAAGTCTAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGACTCAACCTTGTCTGTAATCCTCCAAAGGCAGAAAAGTCTAGCA  700

seq1  CACACTAGGAAGAACTGGAAAAAAAAAAAAAAAAAGAAGAGTTTCAGTAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTAGGAAGAACTGGAAAAAAAAAAAAAAAAAGAAGAGTTTCAGTAA  750

seq1  GATGTATGTGCTAAGCAAATGTGAAAGATGAAAGCACGGAGATTTCTCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATGTGCTAAGCAAATGTGAAAGATGAAAGCACGGAGATTTCTCAC  800

seq1  CATTCTGAAGACAATGAGGAAATGACAATTCAGC-TTCTAGGAACAGCAG  849
      ||||||||||||||||||| |||||||||||||| |||||||||||||||
seq2  CATTCTGAAGACAATGAGG-AATGACAATTCAGCTTTCTAGGAACAGCAG  849

seq1  TTTAGGCTGAGAGTTGTCTACTGACCG-TGAATAAATACTAGGGAATGTG  898
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTAGGCTGAGAGTTGTCTACTGACCGTTGAATAAATACTAGGGAATGTG  899

seq1  TCTTTAAAATGGGATGAGATAAAAAATGCCTAAGTAGTGAAATCATACAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTAAAATGGGATGAGATAAAAAATGCCTAAGTAGTGAAATCATACAC  949

seq1  ACAAAAAGCAAAATGTGAAAATATGAAGAGCTATTTCAAATGAATGTTAT  998
      || ||||||||| |||| |||| || ||||||||||||||||| ||||||
seq2  AC-AAAAGCAAATTGTG-AAATTTG-AGAGCTATTTCAAATGATTGTTAT  996

seq1  TTTTAACAACTCAAGAACTGAATGAGATTTTCAGTTTACAAACTGATAAT  1048
      ||||||||  |||||||||| ||||||||||||| |||||| ||||||||
seq2  TTTTAACACTTCAAGAACTG-ATGAGATTTTCAG-TTACAACCTGATAAT  1044

seq1  GGTTATCATTTTATTAAAGAAACCTCAAAAAATACATTTCAGCAAGACAG  1098
      || |||||||||||||    ||| ||  ||||||||||||||||||| ||
seq2  GG-TATCATTTTATTA---GAACTTC--AAAATACATTTCAGCAAGA-AG  1087

seq1  AACATTTATCACCAATGTGAGGACTTCATATCAAGAATGAAAGGCAAAAG  1148
       |||||||| ||| |||||||||| || |||| ||||||||  ||  |||
seq2  -ACATTTAT-ACC-ATGTGAGGAC-TCTTATC-AGAATGAA--GC-CAAG  1129

seq1  AGAAATAATAATTATGTA  1166
      |||||| |||  ||||||
seq2  AGAAAT-ATA--TATGTA  1144

seq1: chr12_26865491_26866383
seq2: B6Ng01-109F06.g_69_960 (reverse)

seq1  CATACACACATACACACATTATACATATATATATATATACATGAAAAAAG  50
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CATTCACACATACACACATTATACATATATATATATATACATG-AAAAAG  49

seq1  AAACAACCAAAATTGCTGCTGAAAGCCATAAAAAAAAAAACCAAAGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACCAAAATTGCTGCTGAAAGCCATAAAAAAAAAAACCAAAGTTTT  99

seq1  AACCACACACAAACCACAAAGTATTAACCACACACCTGCATCCCAGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACACAAACCACAAAGTATTAACCACACACCTGCATCCCAGGAAG  149

seq1  GCTTCCACTTCCTTACACTGTTCTTAAAACAACTACATTTCCAGAATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCACTTCCTTACACTGTTCTTAAAACAACTACATTTCCAGAATTTT  199

seq1  CTGTACTTATTAAGAATGATACGCTAGCAGTGGCCATGCCAGGACTTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTTATTAAGAATGATACGCTAGCAGTGGCCATGCCAGGACTTGTG  249

seq1  ACCTTCTTTCTGATGGACATGCGGTCTTGATCTCAACACCTGGCCAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCTTTCTGATGGACATGCGGTCTTGATCTCAACACCTGGCCAGCTG  299

seq1  GCTCCAAATTGATCTGCACAGACTGAGTACTCTGGGCTTCTCTGGCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCAAATTGATCTGCACAGACTGAGTACTCTGGGCTTCTCTGGCTGCC  349

seq1  TCACGCTTTGCTAACTCCTCCAGAGTCAGCACCGCTGTTCCAAACACCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGCTTTGCTAACTCCTCCAGAGTCAGCACCGCTGTTCCAAACACCAG  399

seq1  TTGTTAAAGAAGAAAGAGAGACTGGAGCAGGTGGGCTGTGTGGGCTGAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAAAGAAGAAAGAGAGACTGGAGCAGGTGGGCTGTGTGGGCTGAGA  449

seq1  TGTCACATCTACAAAATCTGCAGAGAGAAAGAACTTCAGTGTGCGGTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACATCTACAAAATCTGCAGAGAGAAAGAACTTCAGTGTGCGGTTCA  499

seq1  CTGCACTTTAAACTACACACACACAGAGATGGGGGGAGGGGGGTATCTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACTTTAAACTACACACACACAGAGATGGGGGGAGGGGGGTATCTCT  549

seq1  TGGGAGCCAAAAACAAAGGCTGCGAGAGCCAGAAGGGAAGGCATCGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGCCAAAAACAAAGGCTGCGAGAGCCAGAAGGGAAGGCATCGCCAG  599

seq1  CACCATGGCAGAACAATCTCTGCTCTGCCCATAAAAATGCCAAGATGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATGGCAGAACAATCTCTGCTCTGCCCATAAAAATGCCAAGATGAAA  649

seq1  AAAAAAAAAACTGAGATACATATTTTGGGTTTTCTTGCTCCTTCTGTGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAACTGAGATACATATTTTGGGTTTTCTTGCTCCTTCTGTGGA  699

seq1  AGCTTCTGGGGTGGGGGCGAGTGAAGACCTTGACTTTCCATCTTCTCATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCTGGGGTGGGGGCGAGTGAAGACCTTGACTTTCCATCTTCTCATC  749

seq1  CCAGGCCTAAAACATTGTTGTCTTTGGATATACAAAATGTATGTTGAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCTAAAACATTGTTGTCTTTGGATATACAAAATGTATGTTGAATA  799

seq1  AAGAAAAGAGGTAGAAGATGAAAACAAAAACAAAAAACAATAAAAACAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGAGGTAGAAGATGAAAACAAAAACAAAAAACAATAAAAACAAG  849

seq1  AGGGAAGCAGAGAGATTTCATTTTTCCTTCCACAGAAGAATTC  893
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGCAGAGAGATTTCATTTTTCCTTCCACAGAAGAATTC  892