BAC Information

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BAC

Clone NameB6Ng01-109G23
Chromosome12 (Build37)
Map Location 65,804,817 - 65,941,488
singlet/doubletdoublet
Overlap geneLOC623123, LOC217645
Upstream geneLOC435302, EG623046
Downstream geneLOC217647, Gm527, Klhl28, A430041B07Rik, Prpf39, Fkbp3, Fancm, C79407, Wdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109G23.bB6Ng01-109G23.g
ACCDH916346DH916347
length1,154892
definitionDH916346|Mus musculus domesticus DNA, BAC clone: B6Ng01-109G23, 5' end.DH916347|Mus musculus domesticus DNA, BAC clone: B6Ng01-109G23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,940,325 - 65,941,488)(65,804,817 - 65,805,615)
sequence
gaattcttcaactcccactgccttgattttctcataatgatgggctgtaa
cctggaatcatgagctaatataaaccctttgtctcctagaaaagaaatgt
tcactaagctaaaagtcaattttacagctgaactactttatatatctttg
gtacccttcacatgttaaagtgctacccattgttaaggacacctaaattt
atggcttattttaagaaattaccctttcctttgaagagactgtggaaaat
gacagtgttactggtgacttttttattaattctaagaagttatgctatgc
tcatttgggggtcagttttagaatctgagaaatatctaagtgacaattct
tttttctccctcagaaaaaatggttgtgaagaggtttctatgctaacatt
aagtattccacaaagtgcttatggattatgataattcattgggtactggt
gttaaaaggcctgtgagtagaaatactgccagtcacatatgaaataggat
attgtgaatccttccagcttgctcttccttgaagggagtgctaatggatg
ctagctcaagtgaagccaagaaactggagtggactcagataatgttttcc
ctactaacttccattgtgtggaatttggaatgggatattcagatcacaag
agacaatcaactttcagaaaggaaaatatttgtataacaacaaggttcta
ttacgtttgcttaaatccagtctcctgtgttctccagctacactcatcac
tagagtcttggtatttgctcaaatctcatctcactgtgatggaaacagta
gctaaataaccgggttccctcctcttcatatcagagagtgagcctaattc
agagggacgcagtctgagcagggaccattacctgggaaagagtgcagctg
ccaggtctgagcccagaacaaatcccagagcttctgagctgaaagggttg
cccatttttttcctccatggcaagctggagccctgacactgagaaatgtt
ctttcttctactagagactatttgtcttccaggaaagtattgttgacact
cgagaaaagtgcttatttattggtcctctagtaagagaaacgcaggctgt
tcactttcaccagaagggagctggaatagattggggacactggctctctc
tagt
gaattcatctctttccacacagtcttttaagagatctttcacagagaaaa
ggtaatgtgtgtgtatgtcgatgaccttgtggttggaagtgaaatcatac
ctttaacctccatagcccttaaaaaggaaacctctagcatcatctatatt
tcaaagaaaaggaaactgaaatccaacattgggcaaccaagtcaaggtta
aacagcaattatcaatactatgcagcatagctctcaaactcatggctaga
gcaactagacaaaaaaatgtgtaagaggcagcaacctgttgtttgttatt
ttacatcagttgcatttctacatcgttggaataactcctatgaaaaagaa
atgtaggagacaatttcttctactcaaaaaggaaaaaaagttagggataa
acttagggatactcagaaaatagattcctgttcactggaatctatgaaac
attgacatgaaaagttagaaaagaagtctttaagactttctgtgtttgtg
gactggaaacaacattgttaaaatacccatactaccttaagtaatgcgta
cacagaatggattctctctgaaaaccccagagaccctacttgagaaatgg
aaagggttgtcctaacattaaaatggaagctcagggggaaccagcaatag
ctgacataatctttcaaaatgacaacactggagaagtcacacttcttgac
ttcaaaaccttctgcagcatagaataattaagactctatttccggaataa
agacagaaatgcaaaccaatcaacagaaagtctaaaactaagtcctcaac
aacacctgcatctaaggcacaatctcttcacaaatggaaagtcttaggaa
gctgggtaattacccgcaaaaaacgaaggaaaaaaaagacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_65940325_65941488
seq2: B6Ng01-109G23.b_50_1203 (reverse)

seq1  ACTAGAGAGAGCATGTGTCCCCCAATTCTAATTCCAGCTTCCCTCCTGTG  50
      ||||||||||||  ||||||||  | ||| ||||||||| || ||  |||
seq2  ACTAGAGAGAGCCAGTGTCCCC--AATCT-ATTCCAGCTCCCTTCTGGTG  47

seq1  ATAGTGACAAGCCTGCTGTTTCTCTTACTAGGGGACCAATTAAATAAGCA  100
      | |||||  ||||||| |||||||||||||| ||||||| ||||||||||
seq2  AAAGTGAACAGCCTGC-GTTTCTCTTACTAGAGGACCAA-TAAATAAGCA  95

seq1  CTTTTCTCG-GTGTCAAACATTAACTTTCCTTGGAGACAAATAAGTCTCT  149
      ||||||||| |||||||  ||  |||||||| | |||||||| |||||||
seq2  CTTTTCTCGAGTGTCAACAAT--ACTTTCCTGGAAGACAAAT-AGTCTCT  142

seq1  AAGTAGAAGAAAGAACATTTCTTCAGTGTCAGGGCTCCAGCTTGCCATGG  199
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  -AGTAGAAGAAAGAACATTTC-TCAGTGTCAGGGCTCCAGCTTGCCATGG  190

seq1  GGGAAAAAAATGGGCAACCCTTTCAGCTCAGAAGCTCTGGGATTTTGTTC  249
       ||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGGAAAAAAATGGGCAACCCTTTCAGCTCAGAAGCTCTGGGA-TTTGTTC  239

seq1  TGGGCTCAGACCTGGCAGCTGCACTCTTTCCCAGGTAATGGTCCCTGCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCAGACCTGGCAGCTGCACTCTTTCCCAGGTAATGGTCCCTGCTC  289

seq1  AGACTGCGTCCCTCTGAATTAGGCTCACTCTCTGATATGAAGAGGAGGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCGTCCCTCTGAATTAGGCTCACTCTCTGATATGAAGAGGAGGGA  339

seq1  ACCCGGTTATTTAGCTACTGTTTCCATCACAGTGAGATGAGATTTGAGCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGTTATTTAGCTACTGTTTCCATCACAGTGAGATGAGATTTGAGCA  389

seq1  AATACCAAGACTCTAGTGATGAGTGTAGCTGGAGAACACAGGAGACTGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCAAGACTCTAGTGATGAGTGTAGCTGGAGAACACAGGAGACTGGA  439

seq1  TTTAAGCAAACGTAATAGAACCTTGTTGTTATACAAATATTTTCCTTTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCAAACGTAATAGAACCTTGTTGTTATACAAATATTTTCCTTTCT  489

seq1  GAAAGTTGATTGTCTCTTGTGATCTGAATATCCCATTCCAAATTCCACAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTGATTGTCTCTTGTGATCTGAATATCCCATTCCAAATTCCACAC  539

seq1  AATGGAAGTTAGTAGGGAAAACATTATCTGAGTCCACTCCAGTTTCTTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGAAGTTAGTAGGGAAAACATTATCTGAGTCCACTCCAGTTTCTTGG  589

seq1  CTTCACTTGAGCTAGCATCCATTAGCACTCCCTTCAAGGAAGAGCAAGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACTTGAGCTAGCATCCATTAGCACTCCCTTCAAGGAAGAGCAAGCT  639

seq1  GGAAGGATTCACAATATCCTATTTCATATGTGACTGGCAGTATTTCTACT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGATTCACAATATCCTATTTCATATGTGACTGGCAGTATTTCTACT  689

seq1  CACAGGCCTTTTAACACCAGTACCCAATGAATTATCATAATCCATAAGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCCTTTTAACACCAGTACCCAATGAATTATCATAATCCATAAGCA  739

seq1  CTTTGTGGAATACTTAATGTTAGCATAGAAACCTCTTCACAACCATTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGGAATACTTAATGTTAGCATAGAAACCTCTTCACAACCATTTTT  789

seq1  TCTGAGGGAGAAAAAAGAATTGTCACTTAGATATTTCTCAGATTCTAAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGGAGAAAAAAGAATTGTCACTTAGATATTTCTCAGATTCTAAAA  839

seq1  CTGACCCCCAAATGAGCATAGCATAACTTCTTAGAATTAATAAAAAAGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCCCAAATGAGCATAGCATAACTTCTTAGAATTAATAAAAAAGTC  889

seq1  ACCAGTAACACTGTCATTTTCCACAGTCTCTTCAAAGGAAAGGGTAATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTAACACTGTCATTTTCCACAGTCTCTTCAAAGGAAAGGGTAATTT  939

seq1  CTTAAAATAAGCCATAAATTTAGGTGTCCTTAACAATGGGTAGCACTTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAATAAGCCATAAATTTAGGTGTCCTTAACAATGGGTAGCACTTTA  989

seq1  ACATGTGAAGGGTACCAAAGATATATAAAGTAGTTCAGCTGTAAAATTGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGAAGGGTACCAAAGATATATAAAGTAGTTCAGCTGTAAAATTGA  1039

seq1  CTTTTAGCTTAGTGAACATTTCTTTTCTAGGAGACAAAGGGTTTATATTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAGCTTAGTGAACATTTCTTTTCTAGGAGACAAAGGGTTTATATTA  1089

seq1  GCTCATGATTCCAGGTTACAGCCCATCATTATGAGAAAATCAAGGCAGTG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGATTCCAGGTTACAGCCCATCATTATGAGAAAATCAAGGCAGTG  1139

seq1  GGAGTTGAAGAATTC  1164
      |||||||||||||||
seq2  GGAGTTGAAGAATTC  1154

seq1: chr12_65804817_65805615
seq2: B6Ng01-109G23.g_67_865

seq1  GAATTCATCTCTTTCCACACAGTCTTTTAAGAGATCTTTCACAGAGAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTCTTTCCACACAGTCTTTTAAGAGATCTTTCACAGAGAAAA  50

seq1  GGTAATGTGTGTGTATGTCGATGACCTTGTGGTTGGAAGTGAAATCATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGTGTGTGTATGTCGATGACCTTGTGGTTGGAAGTGAAATCATAC  100

seq1  CTTTAACCTCCATAGCCCTTAAAAAGGAAACCTCTAGCATCATCTATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAACCTCCATAGCCCTTAAAAAGGAAACCTCTAGCATCATCTATATT  150

seq1  TCAAAGAAAAGGAAACTGAAATCCAACATTGGGCAACCAAGTCAAGGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAAAAGGAAACTGAAATCCAACATTGGGCAACCAAGTCAAGGTTA  200

seq1  AACAGCAATTATCAATACTATGCAGCATAGCTCTCAAACTCATGGCTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGCAATTATCAATACTATGCAGCATAGCTCTCAAACTCATGGCTAGA  250

seq1  GCAACTAGACAAAAAAATGTGTAAGAGGCAGCAACCTGTTGTTTGTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTAGACAAAAAAATGTGTAAGAGGCAGCAACCTGTTGTTTGTTATT  300

seq1  TTACATCAGTTGCATTTCTACATCGTTGGAATAACTCCTATGAAAAAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCAGTTGCATTTCTACATCGTTGGAATAACTCCTATGAAAAAGAA  350

seq1  ATGTAGGAGACAATTTCTTCTACTCAAAAAGGAAAAAAAGTTAGGGATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGAGACAATTTCTTCTACTCAAAAAGGAAAAAAAGTTAGGGATAA  400

seq1  ACTTAGGGATACTCAGAAAATAGATTCCTGTTCACTGGAATCTATGAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGGATACTCAGAAAATAGATTCCTGTTCACTGGAATCTATGAAAC  450

seq1  ATTGACATGAAAAGTTAGAAAAGAAGTCTTTAAGACTTTCTGTGTTTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACATGAAAAGTTAGAAAAGAAGTCTTTAAGACTTTCTGTGTTTGTG  500

seq1  GACTGGAAACAACATTGTTAAAATACCCATACTACCTTAAGTAATGCGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGAAACAACATTGTTAAAATACCCATACTACCTTAAGTAATGCGTA  550

seq1  CACAGAATGGATTCTCTCTGAAAACCCCAGAGACCCTACTTGAGAAATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAATGGATTCTCTCTGAAAACCCCAGAGACCCTACTTGAGAAATGG  600

seq1  AAAGGGTTGTCCTAACATTAAAATGGAAGCTCA-GGGGAACCAGCAATAG  649
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAGGGTTGTCCTAACATTAAAATGGAAGCTCAGGGGGAACCAGCAATAG  650

seq1  CTGACATAATCTTTCAAAATGACAACACTGGAGAAGTCACACTTCTTGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACATAATCTTTCAAAATGACAACACTGGAGAAGTCACACTTCTTGAC  700

seq1  TTCAAAACCTTCTGCAGCATAGAATAATTAAGACTCTATTTCCGGAATAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAACCTTCTGCAGCATAGAATAATTAAGACTCTATTTCCGGAATAA  750

seq1  AGACAGAAATGCAAACCAATCAACAGAAAAGTCTAAAACTAAGTCCTCAA  799
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGACAGAAATGCAAACCAATCAACAG-AAAGTCTAAAACTAAGTCCTCAA  799