BAC Information

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BAC

Clone NameB6Ng01-109I24
Chromosome12 (Build37)
Map Location 66,146,271 - 66,147,371
singlet/doubletsinglet
Overlap genenone
Upstream geneEG623046, LOC623123, LOC217645, LOC217647, Gm527, Klhl28, A430041B07Rik
Downstream genePrpf39, Fkbp3, Fancm, C79407, Wdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109I24.bB6Ng01-109I24.g
ACCDH916439DH916440
length1,2191,093
definitionDH916439|Mus musculus domesticus DNA, BAC clone: B6Ng01-109I24, 5' end.DH916440|Mus musculus domesticus DNA, BAC clone: B6Ng01-109I24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaatgatataaaatatcttggcg
tgactctaactaaggaggtgaaagatctgtatgataaaaacttcaaatct
ctgaagaaagaaattaaagaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaagtggaaggagcaatttgcaaatttgtctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatca
ccatgccagacctaaagctttactacagagcaattgtaataaaaactgca
tggtactggtatagagacagacaagtagaccaatggaatagaattgaaga
tccagaaatgaacccacacacctatggtcacttgatcttcgacaagggag
ctaaaaccatccagtggaagaaagacagcattttcaacaattggtgctgg
cacactgggtgttatcgtgtagaagaatgcgaatcgatccatacttatct
ccttgtactaggtcaaatctaggtgatcaggaactcacataaaacagaga
cactgaaacttatagaggagaaagtggggaaagccttgaagatatggcac
aggaaaatctgaacagaaagcatgctgtgctgtagatcgagaatcgacaa
ttggactaatgactcaagttgcagcaagactcgtcatagcaaagatctca
cgaactgggagagaacctc
gaattcactgtacagaccaggcctactccaaattgacagggatctatctg
cccatacttccagagtaccaggattacagttacctggtatcatggctggc
aagactcaatattttgatacattaaggaaaaaaaactataataaaaagtc
actaaacaaagttcatttgcttttatttttaaatatttttgtttgtgtgt
gtatgtatgactatatgaatatatgagatcagactggaacactggatgtc
ctggatttggatttacaggtagttgtaaatccaagcacctgatgtgagta
ctggaaactgaacttgggtcttctccaattgtgaatggtaattcacaaaa
caaagtttaaagacacaggagtactggaagaaatgtttactataggaaga
taaagtgtccaaatgtgagcgtgcatgcacatgcatgtttgtatatatat
aaagatgttactactctggaccaatctcagtgaatctagagaattaccag
aaaccaagaaaagttggtgaaagaaacacagtaagaaagaatggctagat
gactctaactcgggccagctgggagacttcagaacttaggtttacattca
ccaggtctcctctctgaagaaattgctcactgtaagccttagaccaacaa
tatgatttctccaacaaaaacctaaatggttttaaaatattttttctttt
tcaaggatcctctatgaagaggctattaactatatacttctataagtagg
tataaagaaagaaaaagtatctaacaaactcctataacaaaatctgaaat
ctagaagtaaggaaaagacatttcctagaaccatggtgaatgagataata
gcattgaggacatactgcagaacagaaacagctacagagggagaggggaa
aggtaagatttacagattatcaacaggcctgttgggaaagctatatgaac
agcctttttatacacaaatgaagaaacatgggttaggtgagaagaattaa
gccatggaaaatagacttgctgaagattacgatgatgaaaaatccttaga
tttcaatggactaaaatacatacattacatttactgaagccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_66146271_66147371
seq2: B6Ng01-109I24.g_69_1161 (reverse)

seq1  TAGGCTTCAGTAAATGTTAATTGTATGTATTTTAGTCATTTTGAATCTAT  50
      |||||||||||||||||  | ||||||||||||||||  ||  |||||| 
seq2  TAGGCTTCAGTAAATGT--AATGTATGTATTTTAGTCCATTGAAATCTA-  47

seq1  AGTATTTTTCATCATCGTCATCTTCAGC-AGTCTATTTTCCCTGGGCTTA  99
      || ||||||||||||||| ||||||||| |||||||||||| | ||||||
seq2  AGGATTTTTCATCATCGTAATCTTCAGCAAGTCTATTTTCCAT-GGCTTA  96

seq1  ATTTCTTCTCACTTAA-CCATGTTTC-TCATTTGTGTAATAAAAAGGCTG  147
      | |||||||||| ||| ||||||||| |||||||||| ||||||||||||
seq2  A-TTCTTCTCACCTAACCCATGTTTCTTCATTTGTGT-ATAAAAAGGCTG  144

seq1  TTCATATAGCTTTCCCAACAGGCCTGTTGATAATCTGTAAATCTTACCTT  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATAGCTTTCCCAACAGGCCTGTTGATAATCTGTAAATCTTACCTT  194

seq1  TTCCCCCTTCTCCCTCTTGTAGCTGTTTCTGTTCTGCAGTATGTCCTCAA  247
      |   ||| |||||||| |||||||||||||||||||||||||||||||||
seq2  T---CCCCTCTCCCTC-TGTAGCTGTTTCTGTTCTGCAGTATGTCCTCAA  240

seq1  TGCTATTATCTCATTCACCATGGTTCTAGGAAATGTCTTTTCCTTACTTC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTATCTCATTCACCATGGTTCTAGGAAATGTCTTTTCCTTACTTC  290

seq1  TAGATTTCAGATTTTGTTTATAGGAGTTTGTTAGATACTTTTTCTTTCTT  347
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TAGATTTCAGATTTTG-TTATAGGAGTTTGTTAGATACTTTTTCTTTCTT  339

seq1  TATACCTACTTATAGAAGTATATAGTTAATAGCCTCTTCATAGAGGATCC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTACTTATAGAAGTATATAGTTAATAGCCTCTTCATAGAGGATCC  389

seq1  TTGAAAAAGAAAAAATATTTTAAAACCATTTAGGTTTTTGTTGGAGAAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAAAGAAAAAATATTTTAAAACCATTTAGGTTTTTGTTGGAGAAAT  439

seq1  CATATTGTTGGTCTAAGGCTTACAGTGAGCAATTTCTTCAGAGAGGAGAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGTTGGTCTAAGGCTTACAGTGAGCAATTTCTTCAGAGAGGAGAC  489

seq1  CTGGTGAATGTAAACCTAAGTTCTGAAGTCTCCCAGCTGGCCCGAGTTAG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGAATGTAAACCTAAGTTCTGAAGTCTCCCAGCTGGCCCGAGTTAG  539

seq1  AGTCATCTAGCCATTCTTTCTTACTGTGTTTCTTTCACCAACTTTTCTTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCTAGCCATTCTTTCTTACTGTGTTTCTTTCACCAACTTTTCTTG  589

seq1  GTTTCTGGTAATTCTCTAGATTCACTGAGATTGGTCCAGAGTAGTAACAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGGTAATTCTCTAGATTCACTGAGATTGGTCCAGAGTAGTAACAT  639

seq1  CTTTATATATATACAAACATGCATGTGCATGCACGCTCACATTTGGACAC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATATATATACAAACATGCATGTGCATGCACGCTCACATTTGGACAC  689

seq1  TTTATCTTCCTATAGTAAACATTTCTTCCAGTACTCCTGTGTCTTTAAAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTCCTATAGTAAACATTTCTTCCAGTACTCCTGTGTCTTTAAAC  739

seq1  TTTGTTTTGTGAATTACCATTCACAATTGGAGAAGACCCAAGTTCAGTTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTGTGAATTACCATTCACAATTGGAGAAGACCCAAGTTCAGTTT  789

seq1  CCAGTACTCACATCAGGTGCTTGGATTTACAACTACCTGTAAATCCAAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTACTCACATCAGGTGCTTGGATTTACAACTACCTGTAAATCCAAAT  839

seq1  CCAGGACATCCAGTGTTCCAGTCTGATCTCATATATTCATATAGTCATAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACATCCAGTGTTCCAGTCTGATCTCATATATTCATATAGTCATAC  889

seq1  ATACACACACAAACAAAAATATTTAAAAATAAAAGCAAATGAACTTTGTT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACAAACAAAAATATTTAAAAATAAAAGCAAATGAACTTTGTT  939

seq1  TAGTGACTTTTTATTATAGTTTTTTTTCCTTAATGTATCAAAATATTGAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGACTTTTTATTATAGTTTTTTTTCCTTAATGTATCAAAATATTGAG  989

seq1  TCTTGCCAGCCATGATACCAGGTAACTGTAATCCTGGTACTCTGGAAGTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCCAGCCATGATACCAGGTAACTGTAATCCTGGTACTCTGGAAGTA  1039

seq1  TGGGCAGATAGATCCCTGTCAATTTGGAGTAGGCCTGGTCTGTACAGTGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGATAGATCCCTGTCAATTTGGAGTAGGCCTGGTCTGTACAGTGA  1089

seq1  ATTC  1101
      ||||
seq2  ATTC  1093