BAC Information

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BAC

Clone NameB6Ng01-109L14
Chromosome12 (Build37)
Map Location 16,977,325 - 17,118,262
singlet/doubletdoublet
Overlap geneRock2, Pqlc3, 2410004P03Rik, EG668514
Upstream geneLpin1, Ntsr2, Greb1, E2f6
Downstream geneKcnf1, LOC100043299, Pdia6, Atp6v1c2, Nol10, LOC672501, Odc1, LOC100042522, LOC100042528, Hpcal1, EG668525, LOC673341, EG245297
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109L14.bB6Ng01-109L14.g
ACCDH916554DH916555
length1,1101,054
definitionDH916554|Mus musculus domesticus DNA, BAC clone: B6Ng01-109L14, 5' end.DH916555|Mus musculus domesticus DNA, BAC clone: B6Ng01-109L14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,977,325 - 16,978,450)(17,117,203 - 17,118,262)
sequence
gaattcaacttcttcaatagaaattcattttttttctagccaggtggtgt
ggttcacgcctttaatcccaacacttacgaggcagaggcaggtagatctt
tgaacttgaagtcagggctacacgaagaatccctgtctcaaaaaaaaaaa
caaaaaaaaaaaaaacaaacaaaaaaaaaaaccctcactttttattttaa
agtaatatttcgaaagaaatactatggttttataattcgtttagcacaat
ggaaacacaagcctttgttttcactcttcttgatttattaagtggttttc
tcatttaaggaaaaaaactgctaaggaattttgaaagaaggaaattttta
gctttttggggtacatatgaagttttgagggagcagcatttttctcaagg
gtaacactggtgtggtaacagggggagtgcagaggtgagcagtgatccag
tgctctcaaattggatcagtatttgacaactaaaattttataaattgata
tgtaagggtttttcttcttctatttcttagcttgaagaaacaaataggac
actaactagcgatgttgcaaatcttgcaaatgagaaagaagaattaaaca
acaagctgaaagatagccaagaacgtatgtattagcagggactaaagctt
attgtgaatatgcctagtagctattcttgtaactttaatatttctgtgta
tttcagaactgtccaagttgaaagatgaagagatgagtgcagcagctatt
aaagcacagtttgagaagcagcttctgaatgagagaactctcaagactca
agtatgtcaccaggacggaaaggcggttttaaattttgtttatattcttg
tcacctgttacttctagtgctatagggtagatgctaagctcaagcaatat
cactattttgaataattttgtgatttttttttaattcaagttagaagaaa
cttcatgtatgtgaagtgcccccacattctcccctagctttttattattt
gctggtagctgaagagtcagctgatctgaaggcacctgtgattatggaca
ccctctggggctccccattagttgtatcttagcatatatggggtgctagt
acatctctgt
gaattctcagttatcctcttgtggttgggctatggggccaattcaccaac
tagagtctggacctacacacagtctctggccttgagcaacccttccccga
gggtggagctcagtatctcaggacccagttttcagagggaacctcaggct
agctccctccctgcctccacaaatagggaagtactaggtttccttctgga
gacttctcccctgacctgcgaatgtgctttctctttgggttacaagccag
caccaaattatggttcaaataatatggacaacacactaaaagtctcgtgt
gcttgcctaagtgcaggctggggagggcattctatggcacctgcatggtg
attttattgtacttttatacaaggtttctctgcagtgtgatggctaatct
tgtcaacttgaccaaatctggaatccactaaaacccaagcagatggtcac
atccgtgaggtggttttttcttggtcagatcatttgaggcgagaaggctc
actgtaaatctaagcccaaccttgtggtggctgcacacttgaaaggacat
ggaaggaggaagttttttccttttttccttttttccttttttcctttttt
ccttcttgctctcactcttgataacaagttcatttattctgttgctgggg
cattcccacactggtgttaaacctacttccggattccaatgtagattgaa
gaccagcctcatggattgaacaactatcagattctctaacttcctatggg
aggtagccattattggacaagctgaatcacaggctgcaagccactctaat
aagtcccatacatacatacatacatgcatacatacacacacatatataca
catataaacatacatataggcatgcatatgtttgttctatcagttcttat
cctctatagcagtggttctcagtcttcctaatgctttaatactgtcctca
tgtttggtaactcccaacataatattattttttgttgctacttcataatt
gcactgtattgattataagcaaacattctttgttttcattgttttaggca
accc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_16977325_16978450
seq2: B6Ng01-109L14.b_51_1160

seq1  GAATTCAACTTCTTCAATAGAAATTCATTTTTTTTCTAGCCAGGTGGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACTTCTTCAATAGAAATTCATTTTTTTTCTAGCCAGGTGGTGT  50

seq1  GGTTCACGCCTTTAATCCCAACACTTACGAGGCAGAGGCAGGTAGATCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCACGCCTTTAATCCCAACACTTACGAGGCAGAGGCAGGTAGATCTT  100

seq1  TGAACTTGAAGTCAGGGCTACACGAAGAATCCCTGTCTCAAAAAAAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTGAAGTCAGGGCTACACGAAGAATCCCTGTCTCAAAAAAAAAAA  150

seq1  CAAAAAAAAAAAAAACAAACAAAAAAAAAAACCCTCACTTTTTATTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAAAAACAAACAAAAAAAAAAACCCTCACTTTTTATTTTAA  200

seq1  AGTAATATTTCGAAAGAAATACTATGGTTTTATAATTCGTTTAGCACAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATATTTCGAAAGAAATACTATGGTTTTATAATTCGTTTAGCACAAT  250

seq1  GGAAACACAAGCCTTTGTTTTCACTCTTCTTGATTTATTAAGTGGTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACAAGCCTTTGTTTTCACTCTTCTTGATTTATTAAGTGGTTTTC  300

seq1  TCATTTAAGGAAAAAAACTGCTAAGGAATTTTGAAAGAAGGAAATTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAAGGAAAAAAACTGCTAAGGAATTTTGAAAGAAGGAAATTTTTA  350

seq1  GCTTTTTGGGGTACATATGAAGTTTTGAGGGAGCAGCATTTTTCTCAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTGGGGTACATATGAAGTTTTGAGGGAGCAGCATTTTTCTCAAGG  400

seq1  GTAACACTGGTGTGGTAACAGGGGGAGTGCAGAGGTGAGCAGTGATCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACACTGGTGTGGTAACAGGGGGAGTGCAGAGGTGAGCAGTGATCCAG  450

seq1  TGCTCTCAAATTGGATCAGTATTTGACAACTAAAATTTTATAAATTGATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTCAAATTGGATCAGTATTTGACAACTAAAATTTTATAAATTGATA  500

seq1  TGTAAGGGTTTTTCTTCTTCTATTTCTTAGCTTGAAGAAACAAATAGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGGGTTTTTCTTCTTCTATTTCTTAGCTTGAAGAAACAAATAGGAC  550

seq1  ACTAACTAGCGATGTTGCAAATCTTGCAAATGAGAAAGAAGAATTAAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAACTAGCGATGTTGCAAATCTTGCAAATGAGAAAGAAGAATTAAACA  600

seq1  ACAAGCTGAAAGATAGCCAAGAACGTATGTATTAGCAGGGACTAAAGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCTGAAAGATAGCCAAGAACGTATGTATTAGCAGGGACTAAAGCTT  650

seq1  ATTGTGAATATGCCTAGTAGCTATTCTTGTAACTTTAATATTTCTGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAATATGCCTAGTAGCTATTCTTGTAACTTTAATATTTCTGTGTA  700

seq1  TTTCAGAACTGTCCAAGTTGAAAGATGAAGAGATGAGTGCAGCAGCTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGAACTGTCCAAGTTGAAAGATGAAGAGATGAGTGCAGCAGCTATT  750

seq1  AAAGCACAGTTTGAGAAGCAGCTTCTGAATGAGAGAACTCTCAAGACTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACAGTTTGAGAAGCAGCTTCTGAATGAGAGAACTCTCAAGACTCA  800

seq1  AGTATGTCACCAGGACGGAAAGGCGGTTTTAAATTTTGTTTATATTCTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTCACCAGGACGGAAAGGCGGTTTTAAATTTTGTTTATATTCTTG  850

seq1  TCACCTGTTACTTCTAGTGCTATAGGGTAGATGCTAAGCTCAAAGCAATA  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCACCTGTTACTTCTAGTGCTATAGGGTAGATGCTAAGCTC-AAGCAATA  899

seq1  TCACTA-TTTGAATAATTTTGTGATTTTTTTTTTAATTCAAGTTAGAAGA  949
      |||||| ||||||||||||||||| |||||||||||||||||||||||||
seq2  TCACTATTTTGAATAATTTTGTGA-TTTTTTTTTAATTCAAGTTAGAAGA  948

seq1  AACTTCATGTATGTGGAAGTG-CCCCACATTCTCTCCTAGCTTTTTATTA  998
      |||||||||||||| |||||| |||||||||||| |||||||||||||||
seq2  AACTTCATGTATGT-GAAGTGCCCCCACATTCTCCCCTAGCTTTTTATTA  997

seq1  TTTGCTGGTAGCCTGAAAGAGTCAGCTGATCTGAAAGGGCACCTGTGATT  1048
      ||||||||||| ||| |||||||||||||||||||  |||||||||||||
seq2  TTTGCTGGTAG-CTG-AAGAGTCAGCTGATCTGAA--GGCACCTGTGATT  1043

seq1  ATTGACAACCCTCTGTGAGCTCCCACAGTTAGTTGTATCTGTAGCATAAA  1098
      || ||| |||||||| | |||||| || |||||||||||| ||||||| |
seq2  ATGGAC-ACCCTCTG-GGGCTCCC-CA-TTAGTTGTATCT-TAGCATATA  1088

seq1  TAATGTGGGTGCTAGTACCATTCTCTGT  1126
      |     ||||||||||||   |||||||
seq2  T----GGGGTGCTAGTAC--ATCTCTGT  1110

seq1: chr12_17117203_17118262
seq2: B6Ng01-109L14.g_68_1121 (reverse)

seq1  GGGTTGCCTAAGACCACTGAAAAACACAG-ATGTTTGCTTTATAATCAAT  49
      ||||||||||| | || || |||||| || |||||||| |||||||||||
seq2  GGGTTGCCTAA-AACAATG-AAAACAAAGAATGTTTGC-TTATAATCAAT  47

seq1  AACAGTGCAATTATGAAGTAGCAAC-AAAAATAATATTATGGTTGGGAGT  98
       |||||||||||||||||||||||| |||||||||||||| |||||||||
seq2  -ACAGTGCAATTATGAAGTAGCAACAAAAAATAATATTAT-GTTGGGAGT  95

seq1  TACCAAAACATGAGGAACAGTATTAAAGCATTAGGAAGACTGAGAACCAC  148
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  TACC-AAACATGAGG-ACAGTATTAAAGCATTAGGAAGACTGAGAACCAC  143

seq1  TGCTATAGAGGATAAGAACTGATAGAACAAACATATGCATGCCTATATGT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATAGAGGATAAGAACTGATAGAACAAACATATGCATGCCTATATGT  193

seq1  ATGTTTATATGTGTATATATGTGTGTGTATGTATGCATGTATGTATGTAT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATATGTGTATATATGTGTGTGTATGTATGCATGTATGTATGTAT  243

seq1  GTATGGGACTTATTAGAGTGGCTTGCAGCCTGTGATTCAGCTTGTCCAAT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGGGACTTATTAGAGTGGCTTGCAGCCTGTGATTCAGCTTGTCCAAT  293

seq1  AATGGCTACCTCCCAATAGGAAGTTAGAGAATCTGATAGTTGTTCAATCC  348
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AATGGCTACCTCCC-ATAGGAAGTTAGAGAATCTGATAGTTGTTCAATCC  342

seq1  ATGAGGCTGGTCTTCAATCTACATTGGAATCCGGAAGTAGGTTTAACACC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGCTGGTCTTCAATCTACATTGGAATCCGGAAGTAGGTTTAACACC  392

seq1  AGTGTGGGAATGCCCCAGCAACAGAATAAATGAACTTGTTATCAAGAGTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGGAATGCCCCAGCAACAGAATAAATGAACTTGTTATCAAGAGTG  442

seq1  AGAGCAAGAAGGAAAAAAGGAAAAAAGGAAAAAAGGAAAAAAGGAAAAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAGAAGGAAAAAAGGAAAAAAGGAAAAAAGGAAAAAAGGAAAAAA  492

seq1  CTTCCTCCTTCCATGTCCTTTCAAGTGTGCAGCCACCACAAGGTTGGGCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCTTCCATGTCCTTTCAAGTGTGCAGCCACCACAAGGTTGGGCT  542

seq1  TAGATTTACAGTGAGCCTTCTCGCCTCAAATGATCTGACCAAGAAAAAAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTACAGTGAGCCTTCTCGCCTCAAATGATCTGACCAAGAAAAAAC  592

seq1  CACCTCACGGATGTGACCATCTGCTTGGGTTTTAGTGGATTCCAGATTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCACGGATGTGACCATCTGCTTGGGTTTTAGTGGATTCCAGATTTG  642

seq1  GTCAAGTTGACAAGATTAGCCATCACACTGCAGAGAAACCTTGTATAAAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTTGACAAGATTAGCCATCACACTGCAGAGAAACCTTGTATAAAA  692

seq1  GTACAATAAAATCACCATGCAGGTGCCATAGAATGCCCTCCCCAGCCTGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAATAAAATCACCATGCAGGTGCCATAGAATGCCCTCCCCAGCCTGC  742

seq1  ACTTAGGCAAGCACACGAGACTTTTAGTGTGTTGTCCATATTATTTGAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGGCAAGCACACGAGACTTTTAGTGTGTTGTCCATATTATTTGAAC  792

seq1  CATAATTTGGTGCTGGCTTGTAACCCAAAGAGAAAGCACATTCGCAGGTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTTGGTGCTGGCTTGTAACCCAAAGAGAAAGCACATTCGCAGGTC  842

seq1  AGGGGAGAAGTCTCCAGAAGGAAACCTAGTACTTCCCTATTTGTGGAGGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGAAGTCTCCAGAAGGAAACCTAGTACTTCCCTATTTGTGGAGGC  892

seq1  AGGGAGGGAGCTAGCCTGAGGTTCCCTCTGAAAACTGGGTCCTGAGATAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGGAGCTAGCCTGAGGTTCCCTCTGAAAACTGGGTCCTGAGATAC  942

seq1  TGAGCTCCACCCTCGGGGAAGGGTTGCTCAAGGCCAGAGACTGTGTGTAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTCCACCCTCGGGGAAGGGTTGCTCAAGGCCAGAGACTGTGTGTAG  992

seq1  GTCCAGACTCTAGTTGGTGAATTGGCCCCATAGCCCAACCACAAGAGGAT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGACTCTAGTTGGTGAATTGGCCCCATAGCCCAACCACAAGAGGAT  1042

seq1  AACTGAGAATTC  1060
      ||||||||||||
seq2  AACTGAGAATTC  1054