BAC Information

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BAC

Clone NameB6Ng01-109L22
Chromosome12 (Build37)
Map Location 52,057,298 - 52,220,091
singlet/doubletdoublet
Overlap geneLOC100039517
Upstream genePrkcm
Downstream geneLOC636070, LOC100039525, 6030408C04Rik, Scfd1, LOC620390, LOC100039578, Coch, Strn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109L22.bB6Ng01-109L22.g
ACCDH916567DH916568
length1,164967
definitionDH916567|Mus musculus domesticus DNA, BAC clone: B6Ng01-109L22, 5' end.DH916568|Mus musculus domesticus DNA, BAC clone: B6Ng01-109L22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,218,915 - 52,220,091)(52,057,298 - 52,058,261)
sequence
gaattctgctccagggtgtcactcttccgttcagtacacacctcgtaacg
tgccgcaagggaacggacaaaatcaataagaaaagcagactcttctgatg
gatgaagaggttgaaccgaagccagggaaggcttaggagggaaagggaac
agccctgctgacccactcacaagaaccaagaattgatgtggttttgtaaa
caactgttttagtgactggtcaaagtcccttctctacccgaagaccagaa
caagccaccgcaatgactctttttttccagagactcagttttcactcttt
tcttatcttttaaacaccatttttccttcttatgccttttaattactagg
cttcctagtactcagacctagattgtcttgtctaaactttctttcagtga
ctatttgcctcctgggagtcctggcaaccaggcaaagagaccccaatctg
ggagccaaagaaggcctagttttccctcccatccccagcctcattaaata
tggtgcagtttctaccaagagtgttgggggcggaggctgtgtgggcaaga
cacagcttccaaatgttcttgtaaatattcataaaaacacgtcagtgttg
ctaaacccacggtaaaccataaccacccatccctgtacaccctgcatcct
tttgctgttaatccttttgtccgccttgaattccttcccacaattgcttc
tccctccatcttgtgtttttgaattgctgccagccaccttagcctttcag
gcagcccgcggtacccttttcaaagcagcgggccttgctgccagctagga
tgcgaacgatacacgctgtcccagcgatgttgtgttttctcatcttgggt
ccttgctcatggggaacacggcaattattctacccaggacctgatgggga
tttcggagcgacctggcacatctgaacatttttctgactcactgagttgg
catctctgctagatcagcattggcccagttccacacagcctgtcacagca
gtgggtgttgttgtagcactagttttgattgtggcagatgggctctgtga
ctcctcctcttgttctgtgagttcagaaaaggcatctgcttctcattcac
attgcatttgccagagtccaactaattgatgtgtgctataaagaactgta
aggaaaactgttga
gaattcaatccttctggaagtgcttgtaaaagcaaagctggctctgaggt
ggtggggcaggggtaggccagacaggtagctggccgaaagcaactccccc
tctaagaattctcctgtgcatacatgatcaaaataaaaatcttgacagga
tgaatattggcccacttcctcttaatgcatattgagacacaaagctttac
tcgtgatatgcaattctgtactcaggaaccatatatggtaaataagatag
ggcatgttatatcttaatttttacaaacaagttacaaaatatcaggatat
tgaaaccttggggtagtgctttggaatacagtctggaggctgagaagagg
aagcgaaagcatgcatatttatggtagttaaaccatacagcatattaaaa
aattaataatagctttaaaaacttcattccactccttcattcaaaaactt
gggtctttaactactatcagcatctcctcatcagtatcgaagccgccatt
tgcacaggagcatcactacatcatttacctgctgattggaggaataactt
agacgaattattttccatttgatttaagtggggaacatagcatgcaccat
ttctgcttattttatgcacaagcatcataatatattaatcttgaaaactg
tgaaatcgaagcatattttcaagaatgaggggttttttaagaactaaatg
aagtcagcacaggatcatcccatatgagaaaggagctcaccactgtcgga
aaaggatatgactctcgttcaagggggcgaagagcagagtggactcccta
ggcaggaatatttcttgtagcatcactgcttcctcaagcatttctgcctt
gggacaaagatcaatggcaacattcctggtaaaaacatcaacttgttttt
tatcaaacaaactcaaaaaagaagtctggttgtttcttcaccatatcatc
taactgtgtgattgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_52218915_52220091
seq2: B6Ng01-109L22.b_50_1213 (reverse)

seq1  TCAACATGTTTTTTCCTTACAGTTCTTTATTAGCA-ACATTCATTTAGGT  49
      ||||||    ||||||||||||||||||| ||||| ||| ||| ||||  
seq2  TCAACA---GTTTTCCTTACAGTTCTTTA-TAGCACACA-TCAATTAG--  43

seq1  TTTGGACTCTTGTCAAATGCAATGTGAATGGAGAGCAGATGCCTTTTCTG  99
       |||||||| || |||||||||||||||||   |||||||||||||||||
seq2  -TTGGACTC-TGGCAAATGCAATGTGAATGAGAAGCAGATGCCTTTTCTG  91

seq1  AACTCAACAGAACAAGAGGA-GAGTCACAGAGCCCATCTTGCCACAATCA  148
      ||||| |||||||||||||| ||||||||||||||||| |||||||||||
seq2  AACTC-ACAGAACAAGAGGAGGAGTCACAGAGCCCATC-TGCCACAATCA  139

seq1  AAACTAGTGCTTACAACAACACCCACTGCTGGTGACAGGCTGTGTGGAAC  198
      |||||||||| ||||||||||||||||||| |||||||||||||||||||
seq2  AAACTAGTGC-TACAACAACACCCACTGCT-GTGACAGGCTGTGTGGAAC  187

seq1  TGGGCCAATGCTGATCTAGCAAGAGATGCCAACTCAGTGAGTCAGAAAAA  248
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TGGGCCAATGCTGATCTAGC-AGAGATGCCAACTCAGTGAGTCAGAAAAA  236

seq1  TGTTTCAGATGTGCCAGGTCGCTCCGAAATCCCCATCAGGTCCTGGGTAG  298
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-TTCAGATGTGCCAGGTCGCTCCGAAATCCCCATCAGGTCCTGGGTAG  285

seq1  AATAATTGCCGTGTTCCCCATGAGCAAGGAACCAAGATGAGAAAACACAA  348
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AATAATTGCCGTGTTCCCCATGAGCAAGGACCCAAGATGAGAAAACACAA  335

seq1  CATCGCTGGGACAGCGTGTATCGTTCGCATCCTAGCTGGCAGCAAGGCCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGCTGGGACAGCGTGTATCGTTCGCATCCTAGCTGGCAGCAAGGCCC  385

seq1  GCTGCTTTGAAAAGGGTACCGCGGGCTGCCTGAAAGGCTAAGGTGGCTGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTTGAAAAGGGTACCGCGGGCTGCCTGAAAGGCTAAGGTGGCTGG  435

seq1  CAGCAATTCAAAAACACAAGATGGAGGGAGAAGCAATTGTGGGAAGGAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAATTCAAAAACACAAGATGGAGGGAGAAGCAATTGTGGGAAGGAAT  485

seq1  TCAAGGCGGACAAAAGGATTAACAGCAAAAGGATGCAGGGTGTACAGGGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGCGGACAAAAGGATTAACAGCAAAAGGATGCAGGGTGTACAGGGA  535

seq1  TGGGTGGTTATGGTTTACCGTGGGTTTAGCAACACTGACGTGTTTTTATG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGGTTATGGTTTACCGTGGGTTTAGCAACACTGACGTGTTTTTATG  585

seq1  AATATTTACAAGAACATTTGGAAGCTGTGTCTTGCCCACACAGCCTCCGC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTACAAGAACATTTGGAAGCTGTGTCTTGCCCACACAGCCTCCGC  635

seq1  CCCCAACACTCTTGGTAGAAACTGCACCATATTTAATGAGGCTGGGGATG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACACTCTTGGTAGAAACTGCACCATATTTAATGAGGCTGGGGATG  685

seq1  GGAGGGAAAACTAGGCCTTCTTTGGCTCCCAGATTGGGGTCTCTTTGCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGGAAAACTAGGCCTTCTTTGGCTCCCAGATTGGGGTCTCTTTGCCT  735

seq1  GGTTGCCAGGACTCCCAGGAGGCAAATAGTCACTGAAAGAAAGTTTAGAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCCAGGACTCCCAGGAGGCAAATAGTCACTGAAAGAAAGTTTAGAC  785

seq1  AAGACAATCTAGGTCTGAGTACTAGGAAGCCTAGTAATTAAAAGGCATAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAATCTAGGTCTGAGTACTAGGAAGCCTAGTAATTAAAAGGCATAA  835

seq1  GAAGGAAAAATGGTGTTTAAAAGATAAGAAAAGAGTGAAAACTGAGTCTC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAAAATGGTGTTTAAAAGATAAGAAAAGAGTGAAAACTGAGTCTC  885

seq1  TGGAAAAAAAGAGTCATTGCGGTGGCTTGTTCTGGTCTTCGGGTAGAGAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAAAAGAGTCATTGCGGTGGCTTGTTCTGGTCTTCGGGTAGAGAA  935

seq1  GGGACTTTGACCAGTCACTAAAACAGTTGTTTACAAAACCACATCAATTC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTTTGACCAGTCACTAAAACAGTTGTTTACAAAACCACATCAATTC  985

seq1  TTGGTTCTTGTGAGTGGGTCAGCAGGGCTGTTCCCTTTCCCTCCTAAGCC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCTTGTGAGTGGGTCAGCAGGGCTGTTCCCTTTCCCTCCTAAGCC  1035

seq1  TTCCCTGGCTTCGGTTCAACCTCTTCATCCATCAGAAGAGTCTGCTTTTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGGCTTCGGTTCAACCTCTTCATCCATCAGAAGAGTCTGCTTTTC  1085

seq1  TTATTGATTTTGTCCGTTCCCTTGCGGCACGTTACGAGGTGTGTACTGAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGATTTTGTCCGTTCCCTTGCGGCACGTTACGAGGTGTGTACTGAA  1135

seq1  CGGAAGAGTGACACCCTGGAGCAGAATTC  1177
      |||||||||||||||||||||||||||||
seq2  CGGAAGAGTGACACCCTGGAGCAGAATTC  1164

seq1: chr12_52057298_52058261
seq2: B6Ng01-109L22.g_67_1033

seq1  GAATTCAATCCTTCTGGAAGTGCTTGTAAAAGCAAAGCTGGCTCTGAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATCCTTCTGGAAGTGCTTGTAAAAGCAAAGCTGGCTCTGAGGT  50

seq1  GGTGGGGCAGGGGTAGGCCAGACAGGTAGCTGGCCGAAAGCAACTCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGCAGGGGTAGGCCAGACAGGTAGCTGGCCGAAAGCAACTCCCCC  100

seq1  TCTAAGAATTCTCCTGTGCATACATGATCAAAATAAAAATCTTGACAGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAATTCTCCTGTGCATACATGATCAAAATAAAAATCTTGACAGGA  150

seq1  TGAATATTGGCCCACTTCCTCTTAATGCATATTGAGACACAAAGCTTTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTGGCCCACTTCCTCTTAATGCATATTGAGACACAAAGCTTTAC  200

seq1  TCGTGATATGCAATTCTGTACTCAGGAACCATATATGGTAAATAAGATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGATATGCAATTCTGTACTCAGGAACCATATATGGTAAATAAGATAG  250

seq1  GGCATGTTATATCTTAATTTTTACAAACAAGTTACAAAATATCAGGATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATGTTATATCTTAATTTTTACAAACAAGTTACAAAATATCAGGATAT  300

seq1  TGAAACCTTGGGGTAGTGCTTTGGAATACAGTCTGGAGGCTGAGAAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCTTGGGGTAGTGCTTTGGAATACAGTCTGGAGGCTGAGAAGAGG  350

seq1  AAGCGAAAGCATGCATATTTATGGTAGTTAAACCATACAGCATATTAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCGAAAGCATGCATATTTATGGTAGTTAAACCATACAGCATATTAAAA  400

seq1  AATTAATAATAGCTTTAAAAACTTCATTCCACTCCTTCATTCAAAAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATAATAGCTTTAAAAACTTCATTCCACTCCTTCATTCAAAAACTT  450

seq1  GGGTCTTTAACTACTATCAGCATCTCCTCATCAGTATCGAAGCCGCCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTTTAACTACTATCAGCATCTCCTCATCAGTATCGAAGCCGCCATT  500

seq1  TGCACAGGAGCATCACTACATCATTTACCTGCTGATTGGAGGAATAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGGAGCATCACTACATCATTTACCTGCTGATTGGAGGAATAACTT  550

seq1  AGACGAATTATTTTCCATTTGATTTAAGTGGGGAACATAGCATGCACCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGAATTATTTTCCATTTGATTTAAGTGGGGAACATAGCATGCACCAT  600

seq1  TTCTGCTTATTTTATGCACAAGCATCATAATATATTAATCTTGAAAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTTATTTTATGCACAAGCATCATAATATATTAATCTTGAAAACTG  650

seq1  TGAAATCGAAGCATATTTTCAAGAATGAGGGGTTTTTTAAGAACTAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCGAAGCATATTTTCAAGAATGAGGGGTTTTTTAAGAACTAAATG  700

seq1  AAGTCAGCACAGGATCATCCCATATGAGAAAGGAGCTCACCACTGTCGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGCACAGGATCATCCCATATGAGAAAGGAGCTCACCACTGTCGGA  750

seq1  AAAGGATATGACTCTCGTTCAAGGGGGCGAAGAGCAGAGTGGACTCCCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATATGACTCTCGTTCAAGGGGGCGAAGAGCAGAGTGGACTCCCTA  800

seq1  GGCAGGAATATTTCTTGTAGCATCACTGCTTCCTCAAGCATTTCTGCCTT  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGCAGGAATATTTCTTGTAGCATCACTGCTTCCTCAAGCATTTCTGCC-T  849

seq1  TGGGACAAAGATCAAATGCCACATT-CTGGT-AAAACATCAACTTTGTTT  898
      |||||||||||||||  || ||||| ||||| ||||||||||| ||||||
seq2  TGGGACAAAGATCAATGGCAACATTCCTGGTAAAAACATCAAC-TTGTTT  898

seq1  TTTATCAAACAAACTCAAAAA--GAGTCT-GTTGTTTCTTCACCATATCA  945
      |||||||||||||||||||||   ||||| ||||||||||||||||||||
seq2  TTTATCAAACAAACTCAAAAAAGAAGTCTGGTTGTTTCTTCACCATATCA  948

seq1  TCTAACTGTGTGATTGTGT  964
      |||||||||||||||||||
seq2  TCTAACTGTGTGATTGTGT  967