BAC Information

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BAC

Clone NameB6Ng01-109M03
Chromosome12 (Build37)
Map Location 41,114,030 - 41,320,020
singlet/doubletdoublet
Overlap geneZfp277, Dock4
Upstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820
Downstream geneLOC638487, LOC100043157, LOC100043162, Lrrn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109M03.bB6Ng01-109M03.g
ACCDH916577DH916578
length1,2321,101
definitionDH916577|Mus musculus domesticus DNA, BAC clone: B6Ng01-109M03, 5' end.DH916578|Mus musculus domesticus DNA, BAC clone: B6Ng01-109M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,318,769 - 41,320,020)(41,114,030 - 41,115,152)
sequence
gaattccaggtcaagagaggctctgtcccaaagaaaagaatagacaacac
atgaagacagacactcaagactgtcctctggccttcacagccatgtacat
atatgaacccacagacacatcaacagcacacacatacataaacacaccga
tactatggaaaaaaacagtacattgtcttaaaaatgaacaggctggggaa
aggattaaaatcccagcatggctcagaatctagcatatggactccgcaga
gcacctaaggtctcctgtaaactggggtatagaagaaagaagctgaactg
gaatttccagagggcagggaggacctctgagacccacgggcagagtttag
catgctgctttatgtgacatacaagacagcaagcaaactttgttgggctg
agtcaaattattggtggcaacacacattgagcaggggagaactgatattt
ttcagaagaggaacactaaggcagcatagccataacttatgtgtgccctg
gacaaagatgaagagggagaatttctaagatgcagagacgtccatgtgaa
atttgcaaaatctcagacatgccagcctgggtaaacatccgagactcctg
ttaatgactgcactctcaggcagcctgcaaactgaaggtggggatttgga
aacaaactatgccccaagaaattagaaacagtagaagttaactcaagtct
acttgatggaatcaaagaagcaactatggaaagttgtccacgctgcatag
aaatgatgaacagaggataactctgaaaatatactaaaatataatggggg
tgaggggccgcattagaaagacaaatgtggagccatgagtgaaagaaaca
ttatccaagaaacagaagatggcttccagatcctagaagacttctttaaa
ctgcacagaacatctgtagtttctgagcaaatactgaaatgaggaaacag
aatcaaatgactgaaaggagaggagacatcaaatcagaaagcaccaacag
gaaatgcacgccacagtgagaggaacaaaaccttagccgaaaaaagacga
caaacagctgtactgagttgctcaaaagggacacaccccagacttaacca
aatgtcaagacgtggatattcttgaactacgcacatgtgtgctgcatgtg
agtatgaatgccatccccagccaccgacaggggcttgaaggaatggtcca
tttctaaggcttctttaaaaggagaatgaggt
gaattccagcccccaaatctggcttctgattccattttgtggtctttttc
cccgccttttaagtttcaaaattacctaagggtgaaaaatataatgattg
agattttgtccctcgggcaaatctggttaaaacaaagtaggaaatgaaat
tggacgcttgtttcatttcttggttattgtaatggctaatcgtgcttgtc
aactttattggataaagaaatgcccaagggctacagagacacagaacagc
aagagctcagcagctgagagtgctttcagagtaccagagtttggctctca
tcatccatgccaggcagctcacaactgccagtaacttcagtctgagggtt
ctgagacgttcttctggcttttgtaggaacatggatgcatgtgcacataa
tgaatatatacacagacacataaacatactcagaaataaaaaataaagta
tgacttttaaaaaagagcatgtctgtgaggtgtttccagggaggattgac
tgcagggggaggctcagactgagtgtgggtggccccattccacgggctga
agtccagaactaacaaaaacaggagttggcgaaagcaagctgggcactga
tagtcccccttccctctgtttcctgatctatatagatgtgaggggggcct
caggtcctcgctgccatgaacccagccagtcctgccaccatggtttcctt
tctaaggtggactgtatcctcaaactgtgagacgagagaaacttcctccc
ttacctttcttcttgttaacgatttgctcagagcaacacgtaatgaattt
agctataaagtaactacatttttgggcaatacatgataccttcttttcct
aattcactccagaagagggaatgagtcctacctccccgatcatgcaagaa
taacatgaaagcagcggctgctggaaacatacaaccccgacattttaaag
gaaacctcccctataaatatggtagcacctgagtcgatacatttccactg
gtgaaacatgcttcaaacataccacgagtaagctattcactccttggagc
tcttctcctactggatgctcacgtcacaagaaatcattctaagtgatgaa
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_41318769_41320020
seq2: B6Ng01-109M03.b_51_1282 (reverse)

seq1  ACCTCAATTCCTCCTTTATTTATAAAGGAAGCATTAGAAATGTGACCATT  50
      ||||||  | |||||||     |||| ||||| ||||||||| |||||||
seq2  ACCTCA--TTCTCCTTT-----TAAA-GAAGCCTTAGAAATG-GACCATT  41

seq1  CTCTTCATGCCCCTGTCTGGTGCCTGCGTATGTGCACTCATACTCACATG  100
      | ||||| ||||||||| |||| ||| | ||| ||| |||||||||||||
seq2  C-CTTCAAGCCCCTGTC-GGTGGCTGGGGATG-GCATTCATACTCACATG  88

seq1  CATGCACACATGTGCGTTAGTTCAAGAATATCCACCGTCTTGACATTTGG  150
      || ||||||||||||| ||||||||||||||||| |||||||||||||||
seq2  CA-GCACACATGTGCG-TAGTTCAAGAATATCCA-CGTCTTGACATTTGG  135

seq1  TTATGTCTTGGGTGTGTCCCTTTTGAAGCACTCAGTACAGCTGTTTGTCG  200
      ||| |||| |||||||||||||||||   |||||||||||||||||||||
seq2  TTAAGTCTGGGGTGTGTCCCTTTTGAGCAACTCAGTACAGCTGTTTGTCG  185

seq1  TCTTTTCTCGGCTAAGGTTTTGTGTCCTCTCACCTGTGGCGTGCATTTTC  250
      |||||| |||||||||||||||| |||||||| |||||||||||| ||||
seq2  TCTTTTTTCGGCTAAGGTTTTGT-TCCTCTCA-CTGTGGCGTGCA-TTTC  232

seq1  CTGTTGGTGCTTTCTGATTTTGATGTCTCCTCTCCCTTCAGTCATTTGAT  300
      ||||||||||||||||| ||||||||||||||||| ||||||||||||||
seq2  CTGTTGGTGCTTTCTGA-TTTGATGTCTCCTCTCCTTTCAGTCATTTGAT  281

seq1  TCTGTTTTCCTCATTTCAGTATTTGCTCAGAAACTACAGATGTTCTGTGC  350
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTG-TTTCCTCATTTCAGTATTTGCTCAGAAACTACAGATGTTCTGTGC  330

seq1  AGTTTAAAGAAGTCTTCTAGGATCTGGAAGCCATCTTCTGTTTCTTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAAAGAAGTCTTCTAGGATCTGGAAGCCATCTTCTGTTTCTTGGAT  380

seq1  AATGTTTCTTTCACTCATGGCTCCACATTTGTCTTTCTAATGCGGCCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTCTTTCACTCATGGCTCCACATTTGTCTTTCTAATGCGGCCCCT  430

seq1  CACCCCCATTATATTTTAGTATATTTTCAGAGTTATCCTCTGTTCATCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCATTATATTTTAGTATATTTTCAGAGTTATCCTCTGTTCATCAT  480

seq1  TTCTATGCAGCGTGGACAACTTTCCATAGTTGCTTCTTTGATTCCATCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGCAGCGTGGACAACTTTCCATAGTTGCTTCTTTGATTCCATCAA  530

seq1  GTAGACTTGAGTTAACTTCTACTGTTTCTAATTTCTTGGGGCATAGTTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACTTGAGTTAACTTCTACTGTTTCTAATTTCTTGGGGCATAGTTTG  580

seq1  TTTCCAAATCCCCACCTTCAGTTTGCAGGCTGCCTGAGAGTGCAGTCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAAATCCCCACCTTCAGTTTGCAGGCTGCCTGAGAGTGCAGTCATT  630

seq1  AACAGGAGTCTCGGATGTTTACCCAGGCTGGCATGTCTGAGATTTTGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAGTCTCGGATGTTTACCCAGGCTGGCATGTCTGAGATTTTGCAA  680

seq1  ATTTCACATGGACGTCTCTGCATCTTAGAAATTCTCCCTCTTCATCTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCACATGGACGTCTCTGCATCTTAGAAATTCTCCCTCTTCATCTTTG  730

seq1  TCCAGGGCACACATAAGTTATGGCTATGCTGCCTTAGTGTTCCTCTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGCACACATAAGTTATGGCTATGCTGCCTTAGTGTTCCTCTTCTG  780

seq1  AAAAATATCAGTTCTCCCCTGCTCAATGTGTGTTGCCACCAATAATTTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATCAGTTCTCCCCTGCTCAATGTGTGTTGCCACCAATAATTTGA  830

seq1  CTCAGCCCAACAAAGTTTGCTTGCTGTCTTGTATGTCACATAAAGCAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCCCAACAAAGTTTGCTTGCTGTCTTGTATGTCACATAAAGCAGCA  880

seq1  TGCTAAACTCTGCCCGTGGGTCTCAGAGGTCCTCCCTGCCCTCTGGAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAAACTCTGCCCGTGGGTCTCAGAGGTCCTCCCTGCCCTCTGGAAAT  930

seq1  TCCAGTTCAGCTTCTTTCTTCTATACCCCAGTTTACAGGAGACCTTAGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTCAGCTTCTTTCTTCTATACCCCAGTTTACAGGAGACCTTAGGT  980

seq1  GCTCTGCGGAGTCCATATGCTAGATTCTGAGCCATGCTGGGATTTTAATC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCGGAGTCCATATGCTAGATTCTGAGCCATGCTGGGATTTTAATC  1030

seq1  CTTTCCCCAGCCTGTTCATTTTTAAGACAATGTACTGTTTTTTTCCATAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCCAGCCTGTTCATTTTTAAGACAATGTACTGTTTTTTTCCATAG  1080

seq1  TATCGGTGTGTTTATGTATGTGTGTGCTGTTGATGTGTCTGTGGGTTCAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGGTGTGTTTATGTATGTGTGTGCTGTTGATGTGTCTGTGGGTTCAT  1130

seq1  ATATGTACATGGCTGTGAAGGCCAGAGGACAGTCTTGAGTGTCTGTCTTC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTACATGGCTGTGAAGGCCAGAGGACAGTCTTGAGTGTCTGTCTTC  1180

seq1  ATGTGTTGTCTATTCTTTTCTTTGGGACAGAGCCTCTCTTGACCTGGAAT  1250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTGTCTATTCTTTTCTTTGGGACAGAGCCTCTCTTGACCTGGAAT  1230

seq1  TC  1252
      ||
seq2  TC  1232

seq1: chr12_41114030_41115152
seq2: B6Ng01-109M03.g_67_1167

seq1  GAATTCCAGCCCCCAAATCTGGCTTCTGATTCCATTTTGTGGTCTTTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCCCCAAATCTGGCTTCTGATTCCATTTTGTGGTCTTTTTC  50

seq1  CCCGCCTTTTAAGTTTCAAAATTACCTAAGGGTGAAAAATATAATGATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGCCTTTTAAGTTTCAAAATTACCTAAGGGTGAAAAATATAATGATTG  100

seq1  AGATTTTGTCCCTCGGGCAAATCTGGTTAAAACAAAGTAGGAAATGAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGTCCCTCGGGCAAATCTGGTTAAAACAAAGTAGGAAATGAAAT  150

seq1  TGGACGCTTGTTTCATTTCTTGGTTATTGTAATGGCTAATCGTGCTTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACGCTTGTTTCATTTCTTGGTTATTGTAATGGCTAATCGTGCTTGTC  200

seq1  AACTTTATTGGATAAAGAAATGCCCAAGGGCTACAGAGACACAGAACAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTATTGGATAAAGAAATGCCCAAGGGCTACAGAGACACAGAACAGC  250

seq1  AAGAGCTCAGCAGCTGAGAGTGCTTTCAGAGTACCAGAGTTTGGCTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTCAGCAGCTGAGAGTGCTTTCAGAGTACCAGAGTTTGGCTCTCA  300

seq1  TCATCCATGCCAGGCAGCTCACAACTGCCAGTAACTTCAGTCTGAGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCATGCCAGGCAGCTCACAACTGCCAGTAACTTCAGTCTGAGGGTT  350

seq1  CTGAGACGTTCTTCTGGCTTTTGTAGGAACATGGATGCATGTGCACATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACGTTCTTCTGGCTTTTGTAGGAACATGGATGCATGTGCACATAA  400

seq1  TGAATATATACACAGACACATAAACATACTCAGAAATAAAAAATAAAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATATACACAGACACATAAACATACTCAGAAATAAAAAATAAAGTA  450

seq1  TGACTTTTAAAAAAGAGCATGTCTGTGAGGTGTTTCCAGGGAGGATTGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTTAAAAAAGAGCATGTCTGTGAGGTGTTTCCAGGGAGGATTGAC  500

seq1  TGCAGGGGGAGGCTCAGACTGAGTGTGGGTGGCCCCATTCCACGGGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGGGGAGGCTCAGACTGAGTGTGGGTGGCCCCATTCCACGGGCTGA  550

seq1  AGTCCAGAACTAACAAAAACAGGAGTTGGCGAAAGCAAGCTGGGCACTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGAACTAACAAAAACAGGAGTTGGCGAAAGCAAGCTGGGCACTGA  600

seq1  TAGTCCCCCTTCCCTCTGTTTCCTGATCTATATAGATGTGAGGGGGGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCCCCTTCCCTCTGTTTCCTGATCTATATAGATGTGAGGGGGGCCT  650

seq1  CAGGTCCTCGCTGCCATGAACCCAGCCAGTCCTGCCACCATGGTTTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCTCGCTGCCATGAACCCAGCCAGTCCTGCCACCATGGTTTCCTT  700

seq1  TCTAAGGTGGACTGTATCCTCAAACTGTGAGACGAGAGAAACTTCCTCCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGGTGGACTGTATCCTCAAACTGTGAGACGAGAGAAACTTCCTCCC  750

seq1  TTACCTTTCTTCTTGTTAACGATTTGCTCAGAGCAACACGTAATGAATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTTCTTCTTGTTAACGATTTGCTCAGAGCAACACGTAATGAATTT  800

seq1  AGCTATAAAGTAACTACATTTTTGGGCAATACATGATACCTTCTTTTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAAAGTAACTACATTTTTGGGCAATACATGATACCTTCTTTTCCT  850

seq1  AATTCACTCCAGAAGAGGGAATGAGTCCTACCTCCCCGATCAATGCAAGA  900
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AATTCACTCCAGAAGAGGGAATGAGTCCTACCTCCCCGATC-ATGCAAGA  899

seq1  ATAACATGAAAGCAGCGGCTGCTGGAAACCATACAAACCCCCGACATTTT  950
      |||||||||||||||||||||||||||| |||||||  ||||||||||||
seq2  ATAACATGAAAGCAGCGGCTGCTGGAAA-CATACAA--CCCCGACATTTT  946

seq1  AAAGGAAACCCTCCCTTAT-AATATGGTAAGCACCTGAGTCGTATACCAT  999
      |||||||| |||||| ||| |||||||| ||||||||||||| ||| |||
seq2  AAAGGAAA-CCTCCCCTATAAATATGGT-AGCACCTGAGTCG-ATA-CAT  992

seq1  TTCCACTGTGAAAACATGCTTCAAAACATACACACGAGTAAGCATATTCA  1049
      ||||||||   ||||||||||| |||||||| ||||||||||| ||||||
seq2  TTCCACTGGTGAAACATGCTTC-AAACATAC-CACGAGTAAGC-TATTCA  1039

seq1  TCTCCCTTGAAGCTACTTCTCCTACTGGAATGCTCACTGTCAACAAGAGA  1099
       || ||||| |||| ||||||||||||| |||||||| ||| |||||| |
seq2  -CT-CCTTGGAGCT-CTTCTCCTACTGG-ATGCTCAC-GTC-ACAAGAAA  1083

seq1  TTTCAATTCTAAAAGTAGATGAAG  1123
      |    |||||  |||| |||||||
seq2  T---CATTCT--AAGT-GATGAAG  1101