BAC Information

Click to search

BAC

Clone NameB6Ng01-109N13
Chromosome12 (Build37)
Map Location 53,244,780 - 53,390,406
singlet/doubletdoublet
Overlap geneNubpl
Upstream geneLOC100039525, 6030408C04Rik, Scfd1, LOC620390, LOC100039578, Coch, Strn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627
Downstream geneArhgap5, Akap6, Npas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109N13.bB6Ng01-109N13.g
ACCDH916639DH916640
length9921,111
definitionDH916639|Mus musculus domesticus DNA, BAC clone: B6Ng01-109N13, 5' end.DH916640|Mus musculus domesticus DNA, BAC clone: B6Ng01-109N13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,244,780 - 53,245,631)(53,389,287 - 53,390,406)
sequence
gaattcattatctaaatctaattttaaagctatcccaggcaatttatact
tcctgtttcttaggttatgattttgggatattttacattttctttttaaa
aggtttgttactgtgtagtctcttttgtctggtgaacctgatgaataatc
ttttgatgattttggttttcttgcagtccaaggcggttggcttgttagat
gtggatgtgtatggtccttccattccaaagatgatgaacctgagaggaaa
tccagaattatcaccaagtgagtacagaaaagatgaagagtacctactgt
tcactttccaggcaccatatgtgcttgatatgtcatgtagagtagcagtt
tagtgctgagggctggcctcagtcagtccctcaacctgagggaaaagtca
gggtcctaatactcaggtgggcaaggagttgttgaatgacaaacagacac
gaacacgagggaatgctggatttgaatgtaatttctcaaagtgagcatca
gacttatattacagaagaaaacaaaaaagttaggtgacacatcagacaag
gtacattgaagttatcctatgcataatgacagaaaacagagaaatgcata
cataaaggactgacaggaaccagacagtggttacaactgagataaaaggt
ggccctttctaaagtcagctattttaggagccaggttttcacaccttagt
cacaatttatgctattcctctgagccttatgaaagcttataccagagggt
tccgctcttgttaacctttttcatgaataatgcaatactgtagttccttt
ttaaactataacctcttcctagaccattgtaaattcctacatatgggagt
gacttggttctctctagagaactcaccaactttcttctaatatgtcatgt
agtctgtcatacctgactgtaatgaaaatttaagtttactttgttgaatt
aatcctgagatttctagctcttatccataaatactaaaaaaa
gaattccaatgacatcactgtctccatggtaactaatgcacttcaaaagg
gggaaaacagaacaaggctgaaaagcaggggaacaggaatgaagtgggat
aaactgcgcagcactgcctctgcattacggggcactttctaactgaacac
tttgctgtgccttacacttggagcttttaagagccagaaggctcagaagt
caccatattcacgtctcactgataactgagacccacttttctacagagca
gcaccatggttgttagactgcatacagagctcagcactggacgttcttgt
tcactggtgagctttactccagacacgcatgcgtcctttgggtttaagag
atgattaagacatcctacttgtttttaaactgattttgcagtatagaggg
caaatgattaaaatcagggcataaaaagagcgctgtcacagagatacagc
aggcagatgtctaagttgccagaaaagcggggaggattaactccatctta
gaaacaacctcagaatagacactctggtgattttcatttctatgccattt
agtcccaacacacccatgaccacatcctggccttatcaagacccagaact
gtcctaagcctgcaaacttaaaacgacttgtgcgatcccaagcagctgtt
tcctctcttcaccaggcctggatgcagtcctccgggcccttgcaggccac
cacccctcacttccttgtggcatttccttgttaacatcctcaacttttat
ccttatgtggcatctagccagcgatatcccagctgggcttagtgactggc
ctcttttcctctgttatgttctctaagaattatatggcctactctctggc
ttggagaccagaaaaaaaaaatctaacacatcagtatgagattttttttt
ttttaataattgtatctcagaagtatcaagaatgtcaggaggaaagaaac
atctgactagagcacacacgctgacttgttgcagtgtgagcattagactt
tggagtaagagtccacgaaggtacggccatagccacttatgacctcaacg
acgtgtagtaaatgatctagcagtataaacggattcgtttctgaggtgaa
tgggaagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_53244780_53245631
seq2: B6Ng01-109N13.b_47_898

seq1  GAATTCATTATCTAAATCTAATTTTAAAGCTATCCCAGGCAATTTATACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTATCTAAATCTAATTTTAAAGCTATCCCAGGCAATTTATACT  50

seq1  TCCTGTTTCTTAGGTTATGATTTTGGGATATTTTACATTTTCTTTTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTTTCTTAGGTTATGATTTTGGGATATTTTACATTTTCTTTTTAAA  100

seq1  AGGTTTGTTACTGTGTAGTCTCTTTTGTCTGGTGAACCTGATGAATAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGTTACTGTGTAGTCTCTTTTGTCTGGTGAACCTGATGAATAATC  150

seq1  TTTTGATGATTTTGGTTTTCTTGCAGTCCAAGGCGGTTGGCTTGTTAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGATGATTTTGGTTTTCTTGCAGTCCAAGGCGGTTGGCTTGTTAGAT  200

seq1  GTGGATGTGTATGGTCCTTCCATTCCAAAGATGATGAACCTGAGAGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATGTGTATGGTCCTTCCATTCCAAAGATGATGAACCTGAGAGGAAA  250

seq1  TCCAGAATTATCACCAAGTGAGTACAGAAAAGATGAAGAGTACCTACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAATTATCACCAAGTGAGTACAGAAAAGATGAAGAGTACCTACTGT  300

seq1  TCACTTTCCAGGCACCATATGTGCTTGATATGTCATGTAGAGTAGCAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTTTCCAGGCACCATATGTGCTTGATATGTCATGTAGAGTAGCAGTT  350

seq1  TAGTGCTGAGGGCTGGCCTCAGTCAGTCCCTCAACCTGAGGGAAAAGTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCTGAGGGCTGGCCTCAGTCAGTCCCTCAACCTGAGGGAAAAGTCA  400

seq1  GGGTCCTAATACTCAGGTGGGCAAGGAGTTGTTGAATGACAAACAGACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCCTAATACTCAGGTGGGCAAGGAGTTGTTGAATGACAAACAGACAC  450

seq1  GAACACGAGGGAATGCTGGATTTGAATGTAATTTCTCAAAGTGAGCATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACACGAGGGAATGCTGGATTTGAATGTAATTTCTCAAAGTGAGCATCA  500

seq1  GACTTATATTACAGAAGAAAACAAAAAAGTTAGGTGACACATCAGACAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTATATTACAGAAGAAAACAAAAAAGTTAGGTGACACATCAGACAAG  550

seq1  GTACATTGAAGTTATCCTATGCATAATGACAGAAAACAGAGAAATGCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTGAAGTTATCCTATGCATAATGACAGAAAACAGAGAAATGCATA  600

seq1  CATAAAGGACTGACAGGAACCAGACAGTGGTTACAACTGAGATAAAAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAGGACTGACAGGAACCAGACAGTGGTTACAACTGAGATAAAAGGT  650

seq1  GGCCCTTTCTAAAGTCAGCTATTTTAGGAGCCAGGTTTTCACACCTTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTTTCTAAAGTCAGCTATTTTAGGAGCCAGGTTTTCACACCTTAGT  700

seq1  CACAATTTATGCTATTCCTCTGAGCCTTATGAAAGCTTATACCAGAGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATTTATGCTATTCCTCTGAGCCTTATGAAAGCTTATACCAGAGGGT  750

seq1  TCCGCTCTTGTTAACCTTTTTCATGAATAATGCAATACTGTAGTTCCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCTCTTGTTAACCTTTTTCATGAATAATGCAATACTGTAGTTCCTTT  800

seq1  TTAAACTATAACCTCTTCCTAGACCATTGTAAATTCCTACATATGGGAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTATAACCTCTTCCTAGACCATTGTAAATTCCTACATATGGGAGT  850

seq1  GA  852
      ||
seq2  GA  852

seq1: chr12_53389287_53390406
seq2: B6Ng01-109N13.g_66_1176 (reverse)

seq1  TTTTCTCTCCCATTTCACCTCAGAAACG-ATCCGTTTTATACTGCTAGAT  49
      |||||| ||||| ||||||||||||||| ||||| |||||||||||||||
seq2  TTTTCT-TCCCA-TTCACCTCAGAAACGAATCCG-TTTATACTGCTAGAT  47

seq1  CATTTTAACTAACACTGTCGTTTGAGGTCAT-AGTGGCTATGGGCCGTAC  98
      |||||  ||| |||| |||| |||||||||| ||||||||| ||||||| 
seq2  CATTT--ACT-ACAC-GTCG-TTGAGGTCATAAGTGGCTAT-GGCCGTA-  90

seq1  CCTTCGTGGACTCTTTACT-CAAAGTCTAATGCTCACACTTGCAAC-AGT  146
      ||||||||||||| ||||| ||||||||||||||||||| |||||| |||
seq2  CCTTCGTGGACTC-TTACTCCAAAGTCTAATGCTCACAC-TGCAACAAGT  138

seq1  CAGCGTGTGTGCTCTTAGTTCAGATGTTTCTTTCCT-CTGACATTCTTGA  195
      |||||||||||||| ||| ||||||||||||||||| |||||||||||||
seq2  CAGCGTGTGTGCTC-TAG-TCAGATGTTTCTTTCCTCCTGACATTCTTGA  186

seq1  TACTTCTTGAGATACAATTATT-AAAAAAAAAAAATCTCATACTGATGTG  244
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  TACTTC-TGAGATACAATTATTAAAAAAAAAAAAATCTCATACTGATGTG  235

seq1  TTAGATTTTTTTTTTCTGGTCTCCAAGCCAGAGAGTAGGCCATATAATTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTTTTTTTTCTGGTCTCCAAGCCAGAGAGTAGGCCATATAATTC  285

seq1  TTAGAGAACATAACAGAGGAAAAGAGGCCAGTCACTAAGCCCAGCTGGGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAACATAACAGAGGAAAAGAGGCCAGTCACTAAGCCCAGCTGGGA  335

seq1  TATCGCTGGCTAGATGCCACATAAGGATAAAAGTTGAGGATGTTAACAAG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCGCTGGCTAGATGCCACATAAGGATAAAAGTTGAGGATGTTAACAAG  385

seq1  GAAATGCCACAAGGAAGTGAGGGGTGGTGGCCTGCAAGGGCCCGGAGGAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGCCACAAGGAAGTGAGGGGTGGTGGCCTGCAAGGGCCCGGAGGAC  435

seq1  TGCATCCAGGCCTGGTGAAGAGAGGAAACAGCTGCTTGGGATCGCACAAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCAGGCCTGGTGAAGAGAGGAAACAGCTGCTTGGGATCGCACAAG  485

seq1  TCGTTTTAAGTTTGCAGGCTTAGGACAGTTCTGGGTCTTGATAAGGCCAG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTTAAGTTTGCAGGCTTAGGACAGTTCTGGGTCTTGATAAGGCCAG  535

seq1  GATGTGGTCATGGGTGTGTTGGGACTAAATGGCATAGAAATGAAAATCAC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGGTCATGGGTGTGTTGGGACTAAATGGCATAGAAATGAAAATCAC  585

seq1  CAGAGTGTCTATTCTGAGGTTGTTTCTAAGATGGAGTTAATCCTCCCCGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGTCTATTCTGAGGTTGTTTCTAAGATGGAGTTAATCCTCCCCGC  635

seq1  TTTTCTGGCAACTTAGACATCTGCCTGCTGTATCTCTGTGACAGCGCTCT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGCAACTTAGACATCTGCCTGCTGTATCTCTGTGACAGCGCTCT  685

seq1  TTTTATGCCCTGATTTTAATCATTTGCCCTCTATACTGCAAAATCAGTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCCCTGATTTTAATCATTTGCCCTCTATACTGCAAAATCAGTTT  735

seq1  AAAAACAAGTAGGATGTCTTAATCATCTCTTAAACCCAAAGGACGCATGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAGTAGGATGTCTTAATCATCTCTTAAACCCAAAGGACGCATGC  785

seq1  GTGTCTGGAGTAAAGCTCACCAGTGAACAAGAACGTCCAGTGCTGAGCTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTGGAGTAAAGCTCACCAGTGAACAAGAACGTCCAGTGCTGAGCTC  835

seq1  TGTATGCAGTCTAACAACCATGGTGCTGCTCTGTAGAAAAGTGGGTCTCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCAGTCTAACAACCATGGTGCTGCTCTGTAGAAAAGTGGGTCTCA  885

seq1  GTTATCAGTGAGACGTGAATATGGTGACTTCTGAGCCTTCTGGCTCTTAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCAGTGAGACGTGAATATGGTGACTTCTGAGCCTTCTGGCTCTTAA  935

seq1  AAGCTCCAAGTGTAAGGCACAGCAAAGTGTTCAGTTAGAAAGTGCCCCGT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCCAAGTGTAAGGCACAGCAAAGTGTTCAGTTAGAAAGTGCCCCGT  985

seq1  AATGCAGAGGCAGTGCTGCGCAGTTTATCCCACTTCATTCCTGTTCCCCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAGAGGCAGTGCTGCGCAGTTTATCCCACTTCATTCCTGTTCCCCT  1035

seq1  GCTTTTCAGCCTTGTTCTGTTTTCCCCCTTTTGAAGTGCATTAGTTACCA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCAGCCTTGTTCTGTTTTCCCCCTTTTGAAGTGCATTAGTTACCA  1085

seq1  TGGAGACAGTGATGTCATTGGAATTC  1120
      ||||||||||||||||||||||||||
seq2  TGGAGACAGTGATGTCATTGGAATTC  1111