BAC Information

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BAC

Clone NameB6Ng01-110A05
Chromosome12 (Build37)
Map Location 79,720,936 - 79,721,460
singlet/doubletsinglet
Overlap geneGphn
Upstream geneLOC230765, LOC666659, EG626215
Downstream gene4921509E07Rik, Mpp5, Atp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12, Zfyve26, Rad51l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110A05.bB6Ng01-110A05.g
ACCDH916761DH916762
length1,167699
definitionDH916761|Mus musculus domesticus DNA, BAC clone: B6Ng01-110A05, 5' end.DH916762|Mus musculus domesticus DNA, BAC clone: B6Ng01-110A05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgattttacccctgagtttgattat
ttcctgccgtctactcctcttgggtgaatttgcttcctttttttctagag
ctttagatgtgttgtcaagctgctagtatgtgctctctcccgttttttct
tgaagcactcatagctatgagtttccctcttaagaaatgctttcattgtg
tcccaaaggtttgggacgtgtgggcttcatttcattaaactcctaaaagc
ctttaattctttctttatttcttccttgaccaagtatcattgagaaaaag
ggtgaccagtccaagtgagatgtggcctccgatatatgtgtgatgaaaat
cagcctatggcagtgtg
gaattcctgatctttccaagacttttatcatgaatggatgttggatagtg
tcaaatgctttctctgtatctaacaaaaagatcatgtggcttttgtcttt
gagtttgtttatatagtggattatgttgatgtatttccatatattgaaca
atccctgcatccttggtatgaaacctacttggtctggatggatggttgtt
ttgatgtgttcttggatttggttagcgagaattttattgattatttttgc
atcgttattcataatggaaattggtctgaagtaatctatctttgttgggc
cttttttttttttttttggtttaggtatcagagtaattttggcttcatag
aatgaattgggtagagtaccttctgcttctattttgtggaatagtttgtg
aagaactggaattatatcttctttgaaagtctgataggactctgcagtaa
acccatgtacttcggctttatttatttatttatttttggttgggagacta
ttaatgactgcttctatttctttaggggatataggactgtttagatcatt
aatctgatcctgatttaactttgattcctgggtatctgtctagaactttg
tccctttcatccaggttctccagttttgttgagcatatccttttttagaa
ggatctgatgctgttttagatttcttcaggatctgttgtttatgtctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_79720936_79721460
seq2: B6Ng01-110A05.g_213_764 (reverse)

seq1  GGAGACAT-AACAACAGATCCTGAAGAAATCCAAAACACCATCAGATCCT  49
      |||||||| |||||||||||||||||||||| |||||| |||||||||||
seq2  GGAGACATAAACAACAGATCCTGAAGAAATCTAAAACAGCATCAGATCCT  50

seq1  TCTACAAAAAGCTATACTCAACAAAACTGGAAAACCTGGATAAAATGGAC  99
      |||| |||| | ||| ||||||||||||||| ||||||||| ||| ||||
seq2  TCTAAAAAAGGATATGCTCAACAAAACTGGAGAACCTGGATGAAAGGGAC  100

seq1  AAATTTCTAGACAGATA-CTAGGTACCAAAGTTAAATCAGAATCAGGTTA  148
      ||| ||||||||||||| | ||| | |||||||||||||| ||||| |||
seq2  AAAGTTCTAGACAGATACCCAGGAATCAAAGTTAAATCAGGATCAGATTA  150

seq1  ATGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTAAT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTAAACAGTCCTATATCCCCTAAAGAAATAGAAGCAGTCATTAAT  200

seq1  AGTTTCCC------------------AAAAAAAGCCCAAAACCAGATGGG  230
      ||| ||||                  ||| ||||||   ||  | |||||
seq2  AGTCTCCCAACCAAAAATAAATAAATAAATAAAGCC--GAAGTACATGGG  248

seq1  TTTAGTGCAGAGTTCTATCAGACCTTCAAAGAAGATCTAATTCCAGTTCT  280
      |||| |||||||| ||||||||| |||||||||||| |||||||||||||
seq2  TTTACTGCAGAGTCCTATCAGACTTTCAAAGAAGATATAATTCCAGTTCT  298

seq1  GCACAAACTATTCCACAAAATAGAAGCAGAAGGTACTCTACCCAATTCAT  330
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAACTATTCCACAAAATAGAAGCAGAAGGTACTCTACCCAATTCAT  348

seq1  TCTATGAAGCCACAATTACTCTGATACCTATTCC---------ACAGAAA  371
      |||||||||||| |||||||||||||||||  ||         | | |||
seq2  TCTATGAAGCCAAAATTACTCTGATACCTAAACCAAAAAAAAAAAAAAAA  398

seq1  GACCCAACAAAGATAGAGAACTTCAGACCAATTTCCCTTATGAATATCGA  421
      | |||||||||||||||  ||||||||||||||||| ||||||||| |||
seq2  GGCCCAACAAAGATAGATTACTTCAGACCAATTTCCATTATGAATAACGA  448

seq1  TGCAAAAATCCTCAATTAAATTCTCGCTAACCGAATCCAAAAACACATCA  471
      |||||||||  ||||| ||||||||||||||| ||||||| |||||||||
seq2  TGCAAAAATAATCAATAAAATTCTCGCTAACCAAATCCAAGAACACATCA  498

seq1  AAACAATCATCCATCCTGACCAAGTAGGTTTCATTCCAGGGGTGCAGGGA  521
      |||||| ||||||||| ||||||||||||||||| ||| || ||||||||
seq2  AAACAACCATCCATCCAGACCAAGTAGGTTTCATACCAAGGATGCAGGGA  548

seq1  TGGT  525
      | ||
seq2  TTGT  552