BAC Information

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BAC

Clone NameB6Ng01-110G05
Chromosome12 (Build37)
Map Location 42,757,825 - 42,970,011
singlet/doubletdoublet
Overlap geneImmp2l
Upstream geneLOC100043157, LOC100043162, Lrrn3
Downstream geneEG638533
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110G05.bB6Ng01-110G05.g
ACCDH917023DH917024
length954531
definitionDH917023|Mus musculus domesticus DNA, BAC clone: B6Ng01-110G05, 5' end.DH917024|Mus musculus domesticus DNA, BAC clone: B6Ng01-110G05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,968,907 - 42,970,011)(42,757,825 - 42,758,360)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttatgcttaattgggacacaggatcctgtctatgaaaggggaggaaaaaa
aaatgcggtcctgcttaaacattcttactctagacctattatccttgttg
gggttttagtcaacttgatacaagttggagttattggggaagaattctga
ttgaaaacatgcttccagcatattttctgcagaagagtctgcaggtatta
ttttgactaatgatggatgtgaaagggcctagcttacagggggttgtgct
acccctgggcaggtggtactgtgttgtataataaaagcaagctgagatag
ccacagggagcaagctaataagcagcactcctttgtggtctctgcatcag
ttcctgcctccagttcctgccctaatttcccttcagggaaatgtgaagga
ctggtggtcaggacagtaaaccaataaacccgttcctcccgaaattgctt
ttggtcatggcctttatcacagcaacagaaaccaaagtaagatacctagt
gttaaaagcagagagaaacagaaataaatttcacagataggaaacattat
attctaaaacctaactttgttaattcttttaatcttggtattggattaaa
ctggttccgctttataaaactcacagtgcatttatccgtctcccctaagg
tttttttttttccattttttattaggtatttagctcatttacatttccaa
tgctataccaaaagtcccccttatccacccacccccacttccctacctac
tact
agtctcaaaaattaaattaaaaagtgaacagtacctgaggaataataccc
gaggtagtcttttgtcctccatacatggacacatacacacatacacacac
acacacacacacacacacacactcataaaaatgtcattgcacccatacaa
aaatgtatacctgcacaaatagtctccccctctctctaacatattatgtg
attaatacattaaatattgttgagggtggaacatatcaatacttaatggg
caggaaccagagtagaagcagaatgctgaacagctataataatcaaggtg
atgatgggaacttcaaaggaactctttgagtttggatctaaacaactaag
tgcacagtggagatattggagatgaggaatagtggatgtagtaaggaata
taggattggtaggaatgacgtcagccagactaaagtaacattagggactg
tttgtgatgttttgtagcatcccttcctttctcaggcataggagatgtca
ctttctttccatgacagattgcttttaaacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_42968907_42970011
seq2: B6Ng01-110G05.b_47_952 (reverse)

seq1  ATAGCATTGGAAATTGGAAGAGGCAGGGAGAGAGAGAGCACATGGTACTT  50
                                                        
seq2  --------------------------------------------------  0

seq1  GACTACATGGATGATTAATTGATGGAGAAGGAGCAGTAGATGATGCCCAG  100
                                                        
seq2  --------------------------------------------------  0

seq1  CTATTGTTTCCTGTGTAAGTGAGTGAAGAGAAGGATGTGCAAGATCCACA  150
                                                 ||   ||
seq2  -------------------------------------------AT-AGCA  6

seq1  TTGGCAAATCTTCTGTGATAGATGGTAAAGGGCCTCATCTAAACAGATAA  200
      |||| ||||               |||||     | | ||||| |  |||
seq2  TTGG-AAAT---------------GTAAA-----TGAGCTAAATACCTAA  35

seq1  GCTGTGTGTAGGGAGAGTGGAGAAAAATGAGACCAGAAGAGGCATAGCAT  250
              ||   | | |||| |||||                       
seq2  --------TA--AAAAATGGAAAAAAA-----------------------  52

seq1  TAAAACCTTAGGGGAGACGGATAAATGCACTGTGAGTTTTATAAAGCGGA  300
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAACCTTAGGGGAGACGGATAAATGCACTGTGAGTTTTATAAAGCGGA  101

seq1  ACCAGTTTAATCCAATACCAAGATTAAAAGAATTAACAAAGTTAGGTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTTTAATCCAATACCAAGATTAAAAGAATTAACAAAGTTAGGTTTT  151

seq1  AGAATATAATGTTTCCTATCTGTGAAATTTATTTCTGTTTCTCTCTGCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATATAATGTTTCCTATCTGTGAAATTTATTTCTGTTTCTCTCTGCTT  201

seq1  TTAACACTAGGTATCTTACTTTGGTTTCTGTTGCTGTGATAAAGGCCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACACTAGGTATCTTACTTTGGTTTCTGTTGCTGTGATAAAGGCCATG  251

seq1  ACCAAAAGCAATTTCGGGAGGAACGGGTTTATTGGTTTACTGTCCTGACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAGCAATTTCGGGAGGAACGGGTTTATTGGTTTACTGTCCTGACC  301

seq1  ACCAGTCCTTCACATTTCCCTGAAGGGAAATTAGGGCAGGAACTGGAGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCCTTCACATTTCCCTGAAGGGAAATTAGGGCAGGAACTGGAGGC  351

seq1  AGGAACTGATGCAGAGACCACAAAGGAGTGCTGCTTATTAGCTTGCTCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACTGATGCAGAGACCACAAAGGAGTGCTGCTTATTAGCTTGCTCCC  401

seq1  TGTGGCTATCTCAGCTTGCTTTTATTATACAACACAGTACCACCTGCCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTATCTCAGCTTGCTTTTATTATACAACACAGTACCACCTGCCCA  451

seq1  GGGGTAGCACAACCCCCTGTAAGCTAGGCCCTTTCACATCCATCATTAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTAGCACAACCCCCTGTAAGCTAGGCCCTTTCACATCCATCATTAGT  501

seq1  CAAAATAATACCTGCAGACTCTTCTGCAGAAAATATGCTGGAAGCATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAATACCTGCAGACTCTTCTGCAGAAAATATGCTGGAAGCATGTT  551

seq1  TTCAATCAGAATTCTTCCCCAATAACTCCAACTTGTATCAAGTTGACTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATCAGAATTCTTCCCCAATAACTCCAACTTGTATCAAGTTGACTAA  601

seq1  AACCCCAACAAGGATAATAGGTCTAGAGTAAGAATGTTTAAGCAGGACCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCAACAAGGATAATAGGTCTAGAGTAAGAATGTTTAAGCAGGACCG  651

seq1  CATTTTTTTTTCCTCCCCTTTCATAGACAGGATCCTGTGTCCCAATTAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTTTTTCCTCCCCTTTCATAGACAGGATCCTGTGTCCCAATTAAG  701

seq1  CATAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGA  751

seq1  CAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCA  801

seq1  GATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCT  851

seq1  CAGAAAATCAAATAACCCCCTTAAAAAATGGGGCTCAGAACTGAACAAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATCAAATAACCCCCTTAAAAAATGGGGCTCAGAACTGAACAAAG  901

seq1  AATTC  1105
      |||||
seq2  AATTC  906

seq1: chr12_42757825_42758360
seq2: B6Ng01-110G05.g_71_607

seq1  GAATTCAGTCTCAAAAATTAAATTAAAAAGTGAACAGTACCTGAGGAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCTCAAAAATTAAATTAAAAAGTGAACAGTACCTGAGGAATA  50

seq1  ATACCCGAGGTAGTCTTTTGTCCTCCATACATGGACACATACACACATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCGAGGTAGTCTTTTGTCCTCCATACATGGACACATACACACATAC  100

seq1  ACACACACACACACACACACACACACACTCATAAAAATGTCATTGCACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACTCATAAAAATGTCATTGCACCC  150

seq1  ATACAAAAATGTATACCTGCACAAATAGTCTCCCCCTCTCTCTAACATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAAATGTATACCTGCACAAATAGTCTCCCCCTCTCTCTAACATAT  200

seq1  TATGTGATTAATACATTAAATATTGTTGAGGGTGGAACATATCAATACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGATTAATACATTAAATATTGTTGAGGGTGGAACATATCAATACTT  250

seq1  AATGGGCAGGAACCAGAGTAGAAGCAGAATGCTGAACAGCTATAATAATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGCAGGAACCAGAGTAGAAGCAGAATGCTGAACAGCTATAATAATC  300

seq1  AAGGTGATGATGGGAACTTCAAAGGAACTCTTTGAGTTTGGATCTAAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGATGATGGGAACTTCAAAGGAACTCTTTGAGTTTGGATCTAAACA  350

seq1  ACTAAGTGCACAGTGGAGATATTGGAGATGAGGAATAGTGGATGTAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAGTGCACAGTGGAGATATTGGAGATGAGGAATAGTGGATGTAGTAA  400

seq1  GGAATATAGGATTGGTAGGAATGACGTCAGCCAGACTAAAGTAACATTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATAGGATTGGTAGGAATGACGTCAGCCAGACTAAAGTAACATTAG  450

seq1  GGACTGTTTGTGATGTTTTGTAGCATCCCTTCCTTTCTCAGGCATAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGTTTGTGATGTTTTGTAGCATCCCTTCCTTTCTCAGGCATAGGAG  500

seq1  ATGTCACTTTCTTTCCATGACAGATTGC-TTTAAACC  536
      |||||||||||||||||||||||||||| ||||||||
seq2  ATGTCACTTTCTTTCCATGACAGATTGCTTTTAAACC  537