BAC Information

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BAC

Clone NameB6Ng01-110I16
Chromosome12 (Build37)
Map Location 74,553,081 - 74,738,396
singlet/doubletdoublet
Overlap geneTmem30b, 2210039B01Rik, Prkch
Upstream geneLrrc9, 1810048J11Rik, LOC209183, LOC100041323, Dhrs7, LOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6, EG666356
Downstream geneEG666385, LOC100041489, Hif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110I16.bB6Ng01-110I16.g
ACCDH917133DH917134
length9591,018
definitionDH917133|Mus musculus domesticus DNA, BAC clone: B6Ng01-110I16, 5' end.DH917134|Mus musculus domesticus DNA, BAC clone: B6Ng01-110I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,553,081 - 74,554,051)(74,737,370 - 74,738,396)
sequence
gaattctattaacataagtaggagttatttgccattcgaacaaattggtt
cattatccacgtgatatttaagaaaagctaatgcagaaattataatccca
tcccgaaatcaatctgtggaaaagtatgcatgatagccatgaaacaaaat
tctgcccgggatgtttctgagactgctaaggatgcacacgggctgacaga
ggacacttggaccttctcagactcaagccaaccacccaggttcccaatgg
cttctcaaggcttagaagcattagaagcacggaggagagcagccggaggg
aggctcaggcagccctctcattcttagtcttctctctgtggcagccaatc
cctttgaaacatttccagggagctccttgggaggcagatgtgctacactg
tgacttggacccttgatcttgatgacactgaatgaatccagtctgtgtat
ttgccactgaacaaatggagcttggtggggccgtctgtacttctgcacgc
ttttgcttgtcaatggtgtcttccttccccatccttcctctagagtgcac
catgaacaagcagccctgcaggcattatttgtgcttgactgggaccactt
gatcttacctagggaaggctgccagccttccctgacagaagcgatggcac
tgggagaaagaaaaaaagaaaagaaattgggcaatagtcttgtgtactct
cagccctaccatagatggtcttttgcaggaaactaatcaacaggatcaaa
agaagctagtttctcgtacacatagggggacggcagatgaactgggcact
ggtgtttcacaccctgtgccagtcattgtcaaccacagagtaagtcatac
acattacgaggattatagtttatggaaagattcttattttggcagacact
acacaccttcacttttaaattgtcctttcaactagggctcgccctcttcc
tcttccttc
gaattcctcaggatgtagcccatcattaggtaacatgggactacagtgat
gacaaagatggtatggtccaccaagccaaaaatctctgccctttacagaa
aacaaacaaacaaaatggaagaagaagaagaagaaaacactttttggaac
actttccattaatcatgacggagctctgagggaaagagcaggattcagag
ggaaggaaatgagtctaagtttggacacagaactcctgaaatagaaacaa
ttggtaagaagttagaaataaaggcaaaatgtggagtgaagataaggctg
ggcgaccacttgggaaaaggtaaccctttacatacatcaaacccctcagg
aggggcgacaggaaaggaagggaaaacagacccagagagaaggaagaaga
gagaaccggaggagaccctcgggaggtgggaagtctgtgatgagcaacct
tggagaaagttcaatactgggaacctccaagcgccacagtggagagggaa
gatgactttaaagggactgttagacgtgggaagtggaggcaaaagggaga
ctttattcataacgcccacctcatctccggcaggcctggggagggagagg
ttcctttatgcagcaaggaatattaaactgtgtagtttaatgatgtcaga
agataaatttagaagtgttgggctaagggtttctgacaccaggttaacag
atgaaaagtcaatttcaaaaaaaaaaaaaaaagcctagcaaaaatcctta
agcaatagtttaaaggctaagcctgggggtgggggggaaagggcagactg
gactttaggagaccagagtgagtgctgatagaaacgagagaactgggtgg
caaagggcaagaagcttgaaagggctcagtatctgaaaggtaaaagtgtt
acctggaagattctagaagggagctagtttgggggtgactgggtttcaaa
ttactgactgtattaaggaggtggttcaccaaaatgcttgccgagaagaa
atgaggggttgaacctaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_74553081_74554051
seq2: B6Ng01-110I16.b_47_1005

seq1  GAATTCTATTAACATAAGTAGGAGTTATTTGCCATTCGAACAAATTGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATTAACATAAGTAGGAGTTATTTGCCATTCGAACAAATTGGTT  50

seq1  CATTATCCACGTGATATTTAAGAAAAGCTAATGCAGAAATTATAATCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATCCACGTGATATTTAAGAAAAGCTAATGCAGAAATTATAATCCCA  100

seq1  TCCCGAAATCAATCTGTGGAAAAGTATGCATGATAGCCATGAAACAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAAATCAATCTGTGGAAAAGTATGCATGATAGCCATGAAACAAAAT  150

seq1  TCTGCCCGGGATGTTTCTGAGACTGCTAAGGATGCACACGGGCTGACAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCGGGATGTTTCTGAGACTGCTAAGGATGCACACGGGCTGACAGA  200

seq1  GGACACTTGGACCTTCTCAGACTCAAGCCAACCACCCAGGTTCCCAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTTGGACCTTCTCAGACTCAAGCCAACCACCCAGGTTCCCAATGG  250

seq1  CTTCTCAAGGCTTAGAAGCATTAGAAGCACGGAGGAGAGCAGCCGGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCAAGGCTTAGAAGCATTAGAAGCACGGAGGAGAGCAGCCGGAGGG  300

seq1  AGGCTCAGGCAGCCCTCTCATTCTTAGTCTTCTCTCTGTGGCAGCCAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCAGGCAGCCCTCTCATTCTTAGTCTTCTCTCTGTGGCAGCCAATC  350

seq1  CCTTTGAAACATTTCCAGGGAGCTCCTTGGGAGGCAGATGTGCTACACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGAAACATTTCCAGGGAGCTCCTTGGGAGGCAGATGTGCTACACTG  400

seq1  TGACTTGGACCCTTGATCTTGATGACACTGAATGAATCCAGTCTGTGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGGACCCTTGATCTTGATGACACTGAATGAATCCAGTCTGTGTAT  450

seq1  TTGCCACTGAACAAATGGAGCTTGGTGGGGCCGTCTGTACTTCTGCACGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCACTGAACAAATGGAGCTTGGTGGGGCCGTCTGTACTTCTGCACGC  500

seq1  TTTTGCTTGTCAATGGTGTCTTCCTTCCCCATCCTTCCTCTAGAGTGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTGTCAATGGTGTCTTCCTTCCCCATCCTTCCTCTAGAGTGCAC  550

seq1  CATGAACAAGCAGCCCTGCAGGCATTATTTGTGCTTGACTGGGACCACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACAAGCAGCCCTGCAGGCATTATTTGTGCTTGACTGGGACCACTT  600

seq1  GATCTTACCTAGGGAAGGCTGCCAGCCTTCCCTGACAGAAGCGATGGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTACCTAGGGAAGGCTGCCAGCCTTCCCTGACAGAAGCGATGGCAC  650

seq1  TGGGAGAAAGAAAAAAAGAAAAGAAATTGGGCAATAGTCTTGTGTACTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAAAGAAAAAAAGAAAAGAAATTGGGCAATAGTCTTGTGTACTCT  700

seq1  CAGCCCTACCATAGATGGTCTTTTGCAGGAAACTAATCAACAGGATCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTACCATAGATGGTCTTTTGCAGGAAACTAATCAACAGGATCAAA  750

seq1  AGAAGCTAGTTTCTCGTACACATAGGGGGACGGCAGATGAACTGGGCACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTAGTTTCTCGTACACATAGGGGGACGGCAGATGAACTGGGCACT  800

seq1  GTTGTTTCACACCCTGTGCCAGTCATTGTCAACCACAGAGTAAGTCATAA  850
      | |||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGTGTTTCACACCCTGTGCCAGTCATTGTCAACCACAGAGTAAGTCAT-A  849

seq1  CACATTACGAGGATTATAGTTTATGGAAAGATTCTTTATTTTTGGCAGGA  900
      ||||||||||||||||||||||||||||||||||||   |||||||| ||
seq2  CACATTACGAGGATTATAGTTTATGGAAAGATTCTT--ATTTTGGCA-GA  896

seq1  CACTACACACCTTCACTTTTTAAATTGTCCTTTCCAAACCTAGGGCTCGC  950
      |||||||||||||||| |||||||||||||||||   | |||||||||||
seq2  CACTACACACCTTCAC-TTTTAAATTGTCCTTTC---AACTAGGGCTCGC  942

seq1  CCTTCCTTCCTTCCTTCCTTC  971
      |||  ||||||  ||||||||
seq2  CCT--CTTCCT--CTTCCTTC  959

seq1: chr12_74737370_74738396
seq2: B6Ng01-110I16.g_66_1083 (reverse)

seq1  TTAGGTTTCAACCCTCATTTCTCTCTCGGGCAAGCATTTCTGCTGAAACA  50
      |||||||  | ||||||||||| |||| ||||||||||| || || ||| 
seq2  TTAGGTTCAACCCCTCATTTCT-TCTC-GGCAAGCATTT-TGGTG-AACC  46

seq1  ACCTCC-TAATACAGTCAGTATATTTGAAAACCAGTCA-CCCCAAACTAG  98
      |||||| |||||||||||||| |||||||| ||||||| |||||||||||
seq2  ACCTCCTTAATACAGTCAGTA-ATTTGAAACCCAGTCACCCCCAAACTAG  95

seq1  CTCCCCTTCTTAGAATCTTCCAGGTAAACCTTTTAACCTTTCAGATACTG  148
      || |||||| |||||||||||||||||  ||||| |||||||||||||| 
seq2  CT-CCCTTC-TAGAATCTTCCAGGTAACACTTTT-ACCTTTCAGATACT-  141

seq1  GAGCCCTTTCAAGCCTCCTGCCCTTTGCCACCCAGTTCTCTTCGTTTTCT  198
      |||||||||||||| || |||||||||||||||||||||| ||| |||||
seq2  GAGCCCTTTCAAGCTTCTTGCCCTTTGCCACCCAGTTCTC-TCG-TTTCT  189

seq1  ATTCAGCACTCACTCTGGTCTCCTACAGTCCAGTCTGCCCTTT-CCCCCC  247
      | ||||||||||||||||||||||| ||||||||||||||||| ||||||
seq2  A-TCAGCACTCACTCTGGTCTCCTAAAGTCCAGTCTGCCCTTTCCCCCCC  238

seq1  ACCCCCAGGCTTAGCCTTTAAACTATTGCTTAAGGATTTTTGCTAGGCTT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCAGGCTTAGCCTTTAAACTATTGCTTAAGGATTTTTGCTAGGCTT  288

seq1  TTTTTTTTTTTTTTGAAATTGACTTTTCATCTGTTAACCTGGTGTCAGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTTTTTGAAATTGACTTTTCATCTGTTAACCTGGTGTCAGAA  338

seq1  ACCCTTAGCCCAACACTTCTAAATTTATCTTCTGACATCATTAAACTACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTTAGCCCAACACTTCTAAATTTATCTTCTGACATCATTAAACTACA  388

seq1  CAGTTTAATATTCCTTGCTGCATAAAGGAACCTCTCCCTCCCCAGGCCTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTAATATTCCTTGCTGCATAAAGGAACCTCTCCCTCCCCAGGCCTG  438

seq1  CCGGAGATGAGGTGGGCGTTATGAATAAAGTCTCCCTTTTGCCTCCACTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGATGAGGTGGGCGTTATGAATAAAGTCTCCCTTTTGCCTCCACTT  488

seq1  CCCACGTCTAACAGTCCCTTTAAAGTCATCTTCCCTCTCCACTGTGGCGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGTCTAACAGTCCCTTTAAAGTCATCTTCCCTCTCCACTGTGGCGC  538

seq1  TTGGAGGTTCCCAGTATTGAACTTTCTCCAAGGTTGCTCATCACAGACTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGTTCCCAGTATTGAACTTTCTCCAAGGTTGCTCATCACAGACTT  588

seq1  CCCACCTCCCGAGGGTCTCCTCCGGTTCTCTCTTCTTCCTTCTCTCTGGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCTCCCGAGGGTCTCCTCCGGTTCTCTCTTCTTCCTTCTCTCTGGG  638

seq1  TCTGTTTTCCCTTCCTTTCCTGTCGCCCCTCCTGAGGGGTTTGATGTATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTTTCCCTTCCTTTCCTGTCGCCCCTCCTGAGGGGTTTGATGTATG  688

seq1  TAAAGGGTTACCTTTTCCCAAGTGGTCGCCCAGCCTTATCTTCACTCCAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGTTACCTTTTCCCAAGTGGTCGCCCAGCCTTATCTTCACTCCAC  738

seq1  ATTTTGCCTTTATTTCTAACTTCTTACCAATTGTTTCTATTTCAGGAGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGCCTTTATTTCTAACTTCTTACCAATTGTTTCTATTTCAGGAGTT  788

seq1  CTGTGTCCAAACTTAGACTCATTTCCTTCCCTCTGAATCCTGCTCTTTCC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCCAAACTTAGACTCATTTCCTTCCCTCTGAATCCTGCTCTTTCC  838

seq1  CTCAGAGCTCCGTCATGATTAATGGAAAGTGTTCCAAAAAGTGTTTTCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGCTCCGTCATGATTAATGGAAAGTGTTCCAAAAAGTGTTTTCTT  888

seq1  CTTCTTCTTCTTCCATTTTGTTTGTTTGTTTTCTGTAAAGGGCAGAGATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCTTCTTCCATTTTGTTTGTTTGTTTTCTGTAAAGGGCAGAGATT  938

seq1  TTTGGCTTGGTGGACCATACCATCTTTGTCATCACTGTAGTCCCATGTTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCTTGGTGGACCATACCATCTTTGTCATCACTGTAGTCCCATGTTA  988

seq1  CCTAATGATGGGCTACATCCTGAGGAATTC  1027
      ||||||||||||||||||||||||||||||
seq2  CCTAATGATGGGCTACATCCTGAGGAATTC  1018