BAC Information

Click to search

BAC

Clone NameB6Ng01-110I17
Chromosome12 (Build37)
Map Location 40,202,476 - 40,393,917
singlet/doubletdoublet
Overlap genenone
Upstream geneDgkb, LOC668824, LOC100043142, Etv1, LOC100043145
Downstream geneLOC100043148, Arl4a, LOC100043606, Scin, Gm889, Ifrd1, EG629820, Zfp277, Dock4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110I17.bB6Ng01-110I17.g
ACCDH917135DH917136
length696204
definitionDH917135|Mus musculus domesticus DNA, BAC clone: B6Ng01-110I17, 5' end.DH917136|Mus musculus domesticus DNA, BAC clone: B6Ng01-110I17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,393,222 - 40,393,917)(40,202,476 - 40,202,679)
sequence
gaattcctccttgcagatgatttgcttcttttgtgaaaattaaggtttca
tcataatgttctgatacataaaacttacagaaacttcaagacacattcaa
aatttccatttagctctggttatattcctgtgacaaatgcttgccaatat
gaatccttaattctttaacaatcacagcacattgcctatacatcaagtac
ctagatgccatcaataagctggaattaagggtatttcagaagatggaaag
ttctgctttatctcctcccaggcccccaccccctgttgcccatttaatag
agaaacaggagcatgagaacagcatgtatgtggtacatagcacaggctgc
ggagaagtgggcacatatcaaccatgcgtttacacttgaaacacatctat
tgtcatacattttactcgctgaagattctgccattgtgtaaacgtagcag
ccctataggaggaacaacaatatgaacttaccagtaaccccaaagctccc
agcgactaaatcaccaactgaaaagtacacatgaagtgatccatggctcc
agccatctatgtagcagaggatagcctagtcagtcatcaatgggaggaga
ggcctttgtcctgtgaaggctccatgccccagtgtaggggaatgccaggg
ccaggaagtgggagtgggtgggttggtgagcaggggaaggagggaa
tgagtctgcagcaggagaattctaagtttactagtctgactccaaaaact
taacaaaaagtggaataataaaaaggcaatctgtagtctcactctaatga
gctatttattaattaattacacagcacagagaagtgggaaaggaggccaa
tatgaaggctcgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
tgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_40393222_40393917
seq2: B6Ng01-110I17.b_46_741 (reverse)

seq1  TTCCCTCCTTCCCCTGCTCACCAACCCACCCACTCCCACTTCCTGGCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCTTCCCCTGCTCACCAACCCACCCACTCCCACTTCCTGGCCCT  50

seq1  GGCATTCCCCTACACTGGGGCATGGAGCCTTCACAGGACAAAGGCCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTCCCCTACACTGGGGCATGGAGCCTTCACAGGACAAAGGCCTCTC  100

seq1  CTCCCATTGATGACTGACTAGGCTATCCTCTGCTACATAGATGGCTGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCATTGATGACTGACTAGGCTATCCTCTGCTACATAGATGGCTGGAG  150

seq1  CCATGGATCACTTCATGTGTACTTTTCAGTTGGTGATTTAGTCGCTGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGATCACTTCATGTGTACTTTTCAGTTGGTGATTTAGTCGCTGGGA  200

seq1  GCTTTGGGGTTACTGGTAAGTTCATATTGTTGTTCCTCCTATAGGGCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGGGTTACTGGTAAGTTCATATTGTTGTTCCTCCTATAGGGCTGC  250

seq1  TACGTTTACACAATGGCAGAATCTTCAGCGAGTAAAATGTATGACAATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGTTTACACAATGGCAGAATCTTCAGCGAGTAAAATGTATGACAATAG  300

seq1  ATGTGTTTCAAGTGTAAACGCATGGTTGATATGTGCCCACTTCTCCGCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTCAAGTGTAAACGCATGGTTGATATGTGCCCACTTCTCCGCAG  350

seq1  CCTGTGCTATGTACCACATACATGCTGTTCTCATGCTCCTGTTTCTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCTATGTACCACATACATGCTGTTCTCATGCTCCTGTTTCTCTAT  400

seq1  TAAATGGGCAACAGGGGGTGGGGGCCTGGGAGGAGATAAAGCAGAACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGGCAACAGGGGGTGGGGGCCTGGGAGGAGATAAAGCAGAACTTT  450

seq1  CCATCTTCTGAAATACCCTTAATTCCAGCTTATTGATGGCATCTAGGTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCTGAAATACCCTTAATTCCAGCTTATTGATGGCATCTAGGTAC  500

seq1  TTGATGTATAGGCAATGTGCTGTGATTGTTAAAGAATTAAGGATTCATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTATAGGCAATGTGCTGTGATTGTTAAAGAATTAAGGATTCATAT  550

seq1  TGGCAAGCATTTGTCACAGGAATATAACCAGAGCTAAATGGAAATTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGCATTTGTCACAGGAATATAACCAGAGCTAAATGGAAATTTTGA  600

seq1  ATGTGTCTTGAAGTTTCTGTAAGTTTTATGTATCAGAACATTATGATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTCTTGAAGTTTCTGTAAGTTTTATGTATCAGAACATTATGATGAA  650

seq1  ACCTTAATTTTCACAAAAGAAGCAAATCATCTGCAAGGAGGAATTC  696
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAATTTTCACAAAAGAAGCAAATCATCTGCAAGGAGGAATTC  696

seq1: chr12_40202476_40202679
seq2: B6Ng01-110I17.g_71_274

seq1  TGAGTCTGCAGCAGGAGAATTCTAAGTTTACTAGTCTGACTCCAAAAACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCTGCAGCAGGAGAATTCTAAGTTTACTAGTCTGACTCCAAAAACT  50

seq1  TAACAAAAAGTGGAATAATAAAAAGGCAATCTGTAGTCTCACTCTAATGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAAAGTGGAATAATAAAAAGGCAATCTGTAGTCTCACTCTAATGA  100

seq1  GCTATTTATTAATTAATTACACAGCACAGAGAAGTGGGAAAGGAGGCCAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTATTAATTAATTACACAGCACAGAGAAGTGGGAAAGGAGGCCAA  150

seq1  TATGAAGGCTCGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAAGGCTCGTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG  200

seq1  TGTG  204
      ||||
seq2  TGTG  204