BAC Information

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BAC

Clone NameB6Ng01-110M12
Chromosome12 (Build37)
Map Location 80,957,481 - 81,101,530
singlet/doubletdoublet
Overlap geneLOC435309, LOC100041674, LOC666754
Upstream geneAtp6v1d, LOC100041878, Eif2s1, Plek2, 6330442E10Rik, Plekhh1, Pigh, LOC666722, Arg2, Vti1b, Rdh11, Rdh12, Zfyve26, Rad51l1, LOC100041968
Downstream geneZfp36l1, Actn1, Wdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110M12.bB6Ng01-110M12.g
ACCDH917308DH917309
length1,124268
definitionDH917308|Mus musculus domesticus DNA, BAC clone: B6Ng01-110M12, 5' end.DH917309|Mus musculus domesticus DNA, BAC clone: B6Ng01-110M12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,957,481 - 80,958,625)(81,101,284 - 81,101,530)
sequence
gaattctagggagatgagatgggatgggagtgttgttattgaacatgtag
atttcctggccatccagaactaaggaggtctgtttctctggaggcagagc
ctgtaggaaagctcttttagcaaacccttaaggctattaataaattcaat
aaaatttgagacttcaggcttagggagtgggagaggagagtgggtgtgca
tctggctcttggcatctggaataaacagctggcgcccgtcccagttggct
tgagaaccggcagctgttttacctcgagatataacttcttgacaggaaaa
agaggtgggaattctgggtttcgagctactcactgacaacacaattggct
ctgcattggatctcaggatgtctccactttgcagccttgagatttgaccc
aagtcagcataaacacatgcccagatagacatatgtcccatcaaggagaa
agtcctcatggtttgggccaggagtgcagccagtatggcacagggacccc
tcaggtagctcaacgccaggctgctcaggacagcggtcctttctgaagtg
tactggcagaatcaagaactttcaccaccaggcatggttttcaaagcaaa
gacctgctgactacccttccactgagccaggaagagaaggtacgttaggg
cagaaaaagataaggatgaagagtgggagataaaggaatagcaagatggc
tcagtcaataaagcctaaagacccaaattcccagacccacatggttggaa
gagagaatagtctatagcacatacatttgaacatgtacatgtatgtacac
atatactcacaggagcaacacacacacgtaataaaaaaaaacacttaaaa
agaaaaagagaagaatcaaacctttccccagttgtgagacaggaagcctt
taggagccaattctgtttcagactggtttgtgcacccactaacggggcag
tcagactcattttttttcccctgaaagctcagctatgttttgaaacagtc
tcggggtaaatagtgataggaacatgaggagcctggggttgaacagcact
tcttgactgaagggtatcaatggcttccctcaggatctagcttataatga
gtatttttctgcgtgctgggagcc
aagttagcatcagacacaactggatttggagcagaaataatgttaccaga
acttggttactctccacttctctttgcctctctgtgccttgctagcttca
aacccaggtttcaggagacaataaaaggacaacaaccccagctttctgcc
tcgcagaatttcagttaaagggaaacattctcctctccaggagtctcgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgag
tgtgtgtgagcgtgtgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_80957481_80958625
seq2: B6Ng01-110M12.b_43_1166

seq1  GAATTCTAGGGAGATGAGATGGGATGGGAGTGTTGTTATTGAACATGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGGAGATGAGATGGGATGGGAGTGTTGTTATTGAACATGTAG  50

seq1  ATTTCCTGGCCATCCAGAACTAAGGAGGTCTGTTTCTCTGGAGGCAGAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCTGGCCATCCAGAACTAAGGAGGTCTGTTTCTCTGGAGGCAGAGC  100

seq1  CTGTAGGAAAGCTCTTTTAGCAAACCCTTAAGGCTATTAATAAATTCAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGAAAGCTCTTTTAGCAAACCCTTAAGGCTATTAATAAATTCAAT  150

seq1  AAAATTTGAGACTTCAGGCTTAGGGAGTGGGAGAGGAGAGTGGGTGTGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTGAGACTTCAGGCTTAGGGAGTGGGAGAGGAGAGTGGGTGTGCA  200

seq1  TCTGGCTCTTGGCATCTGGAATAAACAGCTGGCGCCCGTCCCAGTTGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTCTTGGCATCTGGAATAAACAGCTGGCGCCCGTCCCAGTTGGCT  250

seq1  TGAGAACCGGCAGCTGTTTTACCTCGAGATATAACTTCTTGACAGGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAACCGGCAGCTGTTTTACCTCGAGATATAACTTCTTGACAGGAAAA  300

seq1  AGAGGTGGGAATTCTGGGTTTCGAGCTACTCACTGACAACACAATTGGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTGGGAATTCTGGGTTTCGAGCTACTCACTGACAACACAATTGGCT  350

seq1  CTGCATTGGATCTCAGGATGTCTCCACTTTGCAGCCTTGAGATTTGACCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATTGGATCTCAGGATGTCTCCACTTTGCAGCCTTGAGATTTGACCC  400

seq1  AAGTCAGCATAAACACATGCCCAGATAGACATATGTCCCATCAAGGAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCAGCATAAACACATGCCCAGATAGACATATGTCCCATCAAGGAGAA  450

seq1  AGTCCTCATGGTTTGGGCCAGGAGTGCAGCCAGTATGGCACAGGGACCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTCATGGTTTGGGCCAGGAGTGCAGCCAGTATGGCACAGGGACCCC  500

seq1  TCAGGTAGCTCAACGCCAGGCTGCTCAGGACAGCGGTCCTTTCTGAAGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTAGCTCAACGCCAGGCTGCTCAGGACAGCGGTCCTTTCTGAAGTG  550

seq1  TACTGGCAGAATCAAGAACTTTCACCACCAGGCATGGTTTTCAAAGCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGCAGAATCAAGAACTTTCACCACCAGGCATGGTTTTCAAAGCAAA  600

seq1  GACCTGCTGACTACCCTTCCACTGAGCCAGGAAGAGAAGGTACGTTAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTGCTGACTACCCTTCCACTGAGCCAGGAAGAGAAGGTACGTTAGGG  650

seq1  CAGAAAAAGATAAGGATGAAGAGTGGGAGATAAAGGAATAGCAAGATGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAGATAAGGATGAAGAGTGGGAGATAAAGGAATAGCAAGATGGC  700

seq1  TCAGTCAATAAAGCCTAAAGACCCAAATTCCCAGACCCACATGGTTGGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCAATAAAGCCTAAAGACCCAAATTCCCAGACCCACATGGTTGGAA  750

seq1  GAGAGAATAGTCTATAGCACATACATTTGAACATGTACATGTATGTACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAATAGTCTATAGCACATACATTTGAACATGTACATGTATGTACAC  800

seq1  ATATACTCACAGGAGCAACACACACACGTAATAAAAAAAAAACACTTAAA  850
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATATACTCACAGGAGCAACACACACACGTAAT-AAAAAAAAACACTTAAA  849

seq1  AAGAAAAAGAGAAGAATCAAACCTTTCCCCAGTTGTGAGACAGGAAGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAAGAGAAGAATCAAACCTTTCCCCAGTTGTGAGACAGGAAGCCT  899

seq1  TTAAGGAGCCCATTCTGTTTCAGACTGGTTTGTGCACCCACCTAACGGGG  950
      || ||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  TT-AGGAGCCAATTCTGTTTCAGACTGGTTTGTGCACCCA-CTAACGGGG  947

seq1  CAGTTCAGACTCATTTTTTTTTCCCCTGAAAGCTCAGCTATGTTTTGAAA  1000
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAG-TCAGACTCA-TTTTTTTTCCCCTGAAAGCTCAGCTATGTTTTGAAA  995

seq1  CAGTCTTCGGGGGTAAATAGTGATAAGGGAACATGGAGGAGCTGGGGTTT  1050
      ||||||   ||||||||||||||||  ||||||| |||||||  ||| ||
seq2  CAGTCT--CGGGGTAAATAGTGATA--GGAACAT-GAGGAGCCTGGGGTT  1040

seq1  GGACAGCCACCTTCTGTGACTGAAGGGTA-CTAT-GCTCCCCCCCCCCCC  1098
      | |||||   ||||| ||||||||||||| | || ||| ||| |      
seq2  GAACAGC--ACTTCT-TGACTGAAGGGTATCAATGGCTTCCCTC------  1081

seq1  GACCCCCAAGCT--TAATGCAGTATTTTTTTCTGCGTGTGCTGGGAGCC  1145
       |    | ||||  ||||| ||||  |||||||||  ||||||||||||
seq2  -AGGATCTAGCTTATAATG-AGTA--TTTTTCTGC--GTGCTGGGAGCC  1124

seq1: chr12_81101284_81101530
seq2: B6Ng01-110M12.g_76_322 (reverse)

seq1  ACACACACACACACACACACACACACACACACACACACACACACACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACACACACACACACACACAC  50

seq1  GAGACTCCTGGAGAGGAGAATGTTTCCCTTTAACTGAAATTCTGCGAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTCCTGGAGAGGAGAATGTTTCCCTTTAACTGAAATTCTGCGAGGC  100

seq1  AGAAAGCTGGGGTTGTTGTCCTTTTATTGTCTCCTGAAACCTGGGTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCTGGGGTTGTTGTCCTTTTATTGTCTCCTGAAACCTGGGTTTGA  150

seq1  AGCTAGCAAGGCACAGAGAGGCAAAGAGAAGTGGAGAGTAACCAAGTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCAAGGCACAGAGAGGCAAAGAGAAGTGGAGAGTAACCAAGTTCT  200

seq1  GGTAACATTATTTCTGCTCCAAATCCAGTTGTGTCTGATGCTAACTT  247
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACATTATTTCTGCTCCAAATCCAGTTGTGTCTGATGCTAACTT  247