BAC Information

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BAC

Clone NameB6Ng01-111L19
Chromosome12 (Build37)
Map Location 45,663,101 - 45,664,251
singlet/doubletsinglet
Overlap geneNrcam
Upstream geneLOC100039059, ENSMUSG00000066507, LOC100039081, LOC664854, Dnajb9, LOC100039062, Pnpla8
Downstream geneEG620025, Stxbp6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111L19.bB6Ng01-111L19.g
ACCDH918002DH918003
length1,1111,147
definitionDH918002|Mus musculus domesticus DNA, BAC clone: B6Ng01-111L19, 5' end.DH918003|Mus musculus domesticus DNA, BAC clone: B6Ng01-111L19, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcatattggttccctgaactgtagagtgagggctattatggttg
gaaaggccaaatggaagcctttagagttgcctctgccaaagaaaatagtg
aatcaaaaacagtatcgtattcctggaggaattgcagaaattactgccac
tatcaaggacttgaaagatgcaggggtggtggttcccaccacatctccat
ttaactctcctatctggccagtgcagaaaacagatggatcatggagaatg
acagttgattaccgaaaactaaatcaggtagtaactccaattgcagctgc
tgtaccagatgtagtttccttacttgagcaaattaacacatctcttggca
cctggtatgcggctattgatctggcaaatgccttcttctcagtacctgtc
cataaggaccaccagaagcaatttgctttcagttggcaaggccaacagta
taccttcacagttttgcctcaaggatatattaactctcctgccctgtgtc
ataatttagttagaagggatcttgatcgtttggatcttccacaaaatatc
acattggtgcactatattgatgacattatgctgattggaccaagtgagca
ggaagtagcaaccactttggactcattggtaacacatatgcgtatcagag
gatgggaaataaatccaaccaaaattcaaggaccatctacctcagtgaaa
ttcttaggagtccagtggtgtggggcatgcagagatattccttctaaggt
gaaagataagttattgcacctggcccctcctacaaccaagaaagaagcac
aacgttttagtggtctatttggattctggagacaacacatcccctcacct
tgggtgttgttacttaggcctaatttacccagtgaccccggaaagctgct
agcctttgcgtggggcctggaacaggagaggcccttcaacaggtccaggc
ctgcctgtgcagctgcctctaccacttggaccattatgacccagcagatc
cgatgtacttgaggggtctgtgggctgaataaagatgcctgtatgagccc
tctgacagcccctaaggtgaatcacataaaaagccctttgggaatttgga
gcaagctctta
gaattctttcagtacaagatactcaatgtcataagagatacacataacag
aatcaatcattaaacagcatagaaaatacagataagtaaatcagtaattg
aataactctcaagtaacatattgaacatacactaggaggtgttgtgccta
tgttgagtgactatgctgatgccacaggatgcagaacttaggagaaatat
catgtctgttgtactttattataaactgtaacaaacccaaaacaaaatgt
gataaatacactgtaaacctaaaatgtatctagtgctcactctacctttt
aaaactgttttagctgaaccacctcggattctcacatcagcaaacacact
gtaccaggtcattgcaaacaggcctgctttgctagattgtgccttctttg
gatctcctatgcctaccattgagtggtaagtaatggctctatttgttttt
tgatacttaattctaacaatgtctggccttagtccaaaaacaaacaggaa
aaatacaatgcacagaccatcatattatagtacattaaatctttctcaaa
tgtttattaactacccactctatgggtataataaattctttcatatatat
aacatgtatactaccagaatgctctattaactacatataaactatttttg
agatttagaggtgccatatttcacaatgccatggacattgcacggaactt
tatgaatagtatctgaaggacactattcacatggttaggaaacatgttct
tgacaataaaataccttggggttggggatgagagttgactcagtgctttt
gcagaggacctaggtttgattcccactacccaaatggtggctctcaactc
tctgtttacttgaatccagaaaagtcttatgcccatttctgaccttcaag
ttatgcatgtgggcacacatacattttaacagggaagatgttcatttaca
taaaataacacaataaatctaaaataaaacatcatggatctggaggagag
gctgtgtgctctacctccccctcggaccatccatttcactaccacctctg
ggaggagtcttcggtgctgctagttattgctttaaggagctagacaggcc
aaagggagaatggtgagagaacagttgggtcaaagggtattgaccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_45663101_45664251
seq2: B6Ng01-111L19.g_68_1214

seq1  GAATTCTTTCAGTACAAGATACTCAATGTCATAAGAGATACACATAACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCAGTACAAGATACTCAATGTCATAAGAGATACACATAACAG  50

seq1  AATCAATCATTAAACAGCATAGAAAATACAGATAAGTAAATCAGTAATTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATCATTAAACAGCATAGAAAATACAGATAAGTAAATCAGTAATTG  100

seq1  AATAACTCTCAAGTAACATATTGAACATACACTAGGAGGTGTTGTGCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTCTCAAGTAACATATTGAACATACACTAGGAGGTGTTGTGCCTA  150

seq1  TGTTGAGTGACTATGCTGATGCCACAGGATGCAGAACTTAGGAGAAATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGTGACTATGCTGATGCCACAGGATGCAGAACTTAGGAGAAATAT  200

seq1  CATGTCTGTTGTACTTTATTATAAACTGTAACAAACCCAAAACAAAATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCTGTTGTACTTTATTATAAACTGTAACAAACCCAAAACAAAATGT  250

seq1  GATAAATACACTGTAAACCTAAAATGTATCTAGTGCTCACTCTACCTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAATACACTGTAAACCTAAAATGTATCTAGTGCTCACTCTACCTTTT  300

seq1  AAAACTGTTTTAGCTGAACCACCTCGGATTCTCACATCAGCAAACACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGTTTTAGCTGAACCACCTCGGATTCTCACATCAGCAAACACACT  350

seq1  GTACCAGGTCATTGCAAACAGGCCTGCTTTGCTAGATTGTGCCTTCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGGTCATTGCAAACAGGCCTGCTTTGCTAGATTGTGCCTTCTTTG  400

seq1  GATCTCCTATGCCTACCATTGAGTGGTAAGTAATGGCTCTATTTGTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCCTATGCCTACCATTGAGTGGTAAGTAATGGCTCTATTTGTTTTT  450

seq1  TGATACTTAATTCTAACAATGTCTGGCCTTAGTCCAAAAACAAACAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACTTAATTCTAACAATGTCTGGCCTTAGTCCAAAAACAAACAGGAA  500

seq1  AAATACAATGCACAGACCATCATATTATAGTACATTAAATCTTTCTCAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAATGCACAGACCATCATATTATAGTACATTAAATCTTTCTCAAA  550

seq1  TGTTTATTAACTACCCACTCTATGGGTATAATAAATTCTTTCATATATAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATTAACTACCCACTCTATGGGTATAATAAATTCTTTCATATATAT  600

seq1  AACATGTATACTACCAGAATGCTCTATTAACTACATATAAACTATTTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTATACTACCAGAATGCTCTATTAACTACATATAAACTATTTTTG  650

seq1  AGATTTAGAGGTGCCATATTTCACAATGCCATGGACATTGCACGGAACTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAGAGGTGCCATATTTCACAATGCCATGGACATTGCACGGAACTT  700

seq1  TATGAATAGTATCTGAAGGACACTATTCACATGGTTAGGAAACATGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATAGTATCTGAAGGACACTATTCACATGGTTAGGAAACATGTTCT  750

seq1  TGACAATAAAATACCTTGGGGTTGGGGATGAGAGTTGACTCAGTGCTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATAAAATACCTTGGGGTTGGGGATGAGAGTTGACTCAGTGCTTTT  800

seq1  GCAGAGGACCTAGGTTTGATTCCCACTACCCAAATGGTGGCTCTCAACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGACCTAGGTTTGATTCCCACTACCCAAATGGTGGCTCTCAACTC  850

seq1  TCTG-TTACTTGAATCCAGAAAAGTC-TATGCCCATTTCTGACCTTC-AG  897
      |||| ||||||||||||||||||||| |||||||||||||||||||| ||
seq2  TCTGTTTACTTGAATCCAGAAAAGTCTTATGCCCATTTCTGACCTTCAAG  900

seq1  GTATGCATGT-GGCACACATACATTTAACCAGGGAAGATGTTCATTTACA  946
       ||||||||| ||||||||||||||| | |||||||||||||||||||||
seq2  TTATGCATGTGGGCACACATACATTTTAACAGGGAAGATGTTCATTTACA  950

seq1  TAAAATAACACAATAAATCTAAAATAAAACATCATGGATCTGGAGGAGAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAACACAATAAATCTAAAATAAAACATCATGGATCTGGAGGAGAG  1000

seq1  GCTGTGTGCTCTTACCT-CCCCTCGGACCATCCATTTTCACATACCACTC  1045
      ||||||||||| ||||| |||||||||||||||| |||||| ||||||  
seq2  GCTGTGTGCTC-TACCTCCCCCTCGGACCATCCA-TTTCAC-TACCACCT  1047

seq1  CTGGGAGGAGTCCTTCGGTTGCTGCTAGTTTATTTGCTTTAAAGGAGCTA  1095
      ||||||||||| |||||| |||||||||||   ||||||| |||||||||
seq2  CTGGGAGGAGT-CTTCGG-TGCTGCTAGTT--ATTGCTTT-AAGGAGCTA  1092

seq1  GACAGGCCAAGGGGAAGATGTGTGAG-GAACAGTTGGAACAGATAGGTAT  1144
      |||||||||| ||||  ||| ||||| ||||||||||  || |  |||||
seq2  GACAGGCCAAAGGGAGAATG-GTGAGAGAACAGTTGGGTCA-AAGGGTAT  1140

seq1  TGACCAT  1151
      |||||||
seq2  TGACCAT  1147