BAC Information

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BAC

Clone NameB6Ng01-111M01
Chromosome12 (Build37)
Map Location 36,680,998 - 36,819,824
singlet/doubletdoublet
Overlap geneAgr2, Tspan13, EG432649, Bzw2
Upstream geneSnx13, Ahr, LOC100043575, LOC629758, LOC100043579, LOC669866, Agr3
Downstream geneAnkmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111M01.bB6Ng01-111M01.g
ACCDH918014DH918015
length3471,043
definitionDH918014|Mus musculus domesticus DNA, BAC clone: B6Ng01-111M01, 5' end.DH918015|Mus musculus domesticus DNA, BAC clone: B6Ng01-111M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,819,478 - 36,819,824)(36,680,998 - 36,682,052)
sequence
ttggcctcatgattctacagaaaatgcagatacctctccagaaccgcctc
cacacccagagttttggggggtttttttggttttgtttttttttttttaa
acatgacattccgtatggtaacttggcaaccttgctttctgactgcagcc
gacgttctgagcgaagaggcgatactgaagtggtataaagaagcacacgc
cgccaaaggcaagagcgtctttcttgaccagatgaagaaatttgtggagt
ggttacaaaatgcagaagaaggtaacttcatgtaacagccctcatggtca
ctagtcaaatgcttattgctttattctaggttttctctcaatccccc
gaattccacccagtggtaagatgtatatatgcctcaacaataggaaacaa
tccctttctaccaggactttgatggagtgggaccagtagagagaggcaca
gctgtctcaccatgctgtcgggttccatacaagctgtagtgcttatgaat
cttgagtaaaatgagaatgtgttccattactgccaatttcataaaacaaa
gtatactgtgggattaaagattcattgatatagccccaaaacacaaaagt
atatacaggttttatatttcagtattttataattagcctaatatgtcagg
cttcaagaaattttaatctttctagaaaattatacatatatacattaata
ttggctaaatgctttaaagtgatactacttaaaacataattatatacact
ctacatattcaggaccagtcttacttagtaaaggaaaaatgagaattttc
ttttctgctttttaaatgtgttttttcccgtctgtttttcactaaatagt
aagcccctggaaacagagtcttttcctgtgactccctggccctcttacac
atctacactgatacacagagtcacaaaattgttttgatgttgggagggca
aaaggattttggagcctacccacaacctaataaacagaggactcacctgc
tatttgcccagatttggtttagaactactgcacactgtggctggaacaga
tctactggaatacaagtggattccagtaaccattgattactgccactcat
agaaattcagtgcagtgattttcatagagcatatgtcatcacactgagct
acattcattttttatttgctgtgatgaaacaccctaaccaaaaacaaaca
aacaaacaaacaagcaaacaaacaaaaaattaaataaacaacaaaaaaac
ccagcttaatagaaagggtttatttattttagcttacagttacagcttac
agtcaaattacagggagccaaaatttcaaaactgagcactgtgttatatc
atatcacagtcagagcagagataataatgcatgcatgctagtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_36819478_36819824
seq2: B6Ng01-111M01.b_50_396 (reverse)

seq1  GGGGGATTGAGAGAAAACCTAGAATAAAGCAATAAGCATTTGACTAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGATTGAGAGAAAACCTAGAATAAAGCAATAAGCATTTGACTAGTGA  50

seq1  CCATGAGGGCTGTTACATGAAGTTACCTTCTTCTGCATTTTGTAACCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAGGGCTGTTACATGAAGTTACCTTCTTCTGCATTTTGTAACCACT  100

seq1  CCACAAATTTCTTCATCTGGTCAAGAAAGACGCTCTTGCCTTTGGCGGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAATTTCTTCATCTGGTCAAGAAAGACGCTCTTGCCTTTGGCGGCG  150

seq1  TGTGCTTCTTTATACCACTTCAGTATCGCCTCTTCGCTCAGAACGTCGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTCTTTATACCACTTCAGTATCGCCTCTTCGCTCAGAACGTCGGC  200

seq1  TGCAGTCAGAAAGCAAGGTTGCCAAGTTACCATACGGAATGTCATGTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTCAGAAAGCAAGGTTGCCAAGTTACCATACGGAATGTCATGTTTA  250

seq1  AAAAAAAAAAAACAAAACCAAAAAAACCCCCCAAAACTCTGGGTGTGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAACAAAACCAAAAAAACCCCCCAAAACTCTGGGTGTGGAG  300

seq1  GCGGTTCTGGAGAGGTATCTGCATTTTCTGTAGAATCATGAGGCCAA  347
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTTCTGGAGAGGTATCTGCATTTTCTGTAGAATCATGAGGCCAA  347

seq1: chr12_36680998_36682052
seq2: B6Ng01-111M01.g_67_1109

seq1  GAATTCCACCCAGTGGTAAGATGTATATATGCCTCAACAATAGGAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCCAGTGGTAAGATGTATATATGCCTCAACAATAGGAAACAA  50

seq1  TCCCTTTCTACCAGGACTTTGATGGAGTGGGACCAGTAGAGAGAGGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCTACCAGGACTTTGATGGAGTGGGACCAGTAGAGAGAGGCACA  100

seq1  GCTGTCTCACCATGCTGTCGGGTTCCATACAAGCTGTAGTGCTTATGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCTCACCATGCTGTCGGGTTCCATACAAGCTGTAGTGCTTATGAAT  150

seq1  CTTGAGTAAAATGAGAATGTGTTCCATTACTGCCAATTTCATAAAACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTAAAATGAGAATGTGTTCCATTACTGCCAATTTCATAAAACAAA  200

seq1  GTATACTGTGGGATTAAAGATTCATTGATATAGCCCCAAAACACAAAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACTGTGGGATTAAAGATTCATTGATATAGCCCCAAAACACAAAAGT  250

seq1  ATATACAGGTTTTATATTTCAGTATTTTATAATTAGCCTAATATGTCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAGGTTTTATATTTCAGTATTTTATAATTAGCCTAATATGTCAGG  300

seq1  CTTCAAGAAATTTTAATCTTTCTAGAAAATTATACATATATACATTAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGAAATTTTAATCTTTCTAGAAAATTATACATATATACATTAATA  350

seq1  TTGGCTAAATGCTTTAAAGTGATACTACTTAAAACATAATTATATACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTAAATGCTTTAAAGTGATACTACTTAAAACATAATTATATACACT  400

seq1  CTACATATTCAGGACCAGTCTTACTTAGTAAAGGAAAAATGAGAATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATATTCAGGACCAGTCTTACTTAGTAAAGGAAAAATGAGAATTTTC  450

seq1  TTTTCTGCTTTTTAAATGTGTTTTTTCCCGTCTGTTTTTCACTAAATAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGCTTTTTAAATGTGTTTTTTCCCGTCTGTTTTTCACTAAATAGT  500

seq1  AAGCCCCTGGAAACAGAGTCTTTTCCTGTGACTCCCTGGCCCTCTTACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCCCTGGAAACAGAGTCTTTTCCTGTGACTCCCTGGCCCTCTTACAC  550

seq1  ATCTACACTGATACACAGAGTCACAAAATTGTTTTGATGTTGGGAGGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACACTGATACACAGAGTCACAAAATTGTTTTGATGTTGGGAGGGCA  600

seq1  AAAGGATTTTGGAGCCTACCCACAACCTAATAAACAGAGGACTCACCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATTTTGGAGCCTACCCACAACCTAATAAACAGAGGACTCACCTGC  650

seq1  TATTTGCCCAGATTTGGTTTAGAACTACTGCACACTGTGGCTGGAACAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGCCCAGATTTGGTTTAGAACTACTGCACACTGTGGCTGGAACAGA  700

seq1  TCTACTGGAATACAAGTGGATTCCAGTAACCATTGATTACTGCCACTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGGAATACAAGTGGATTCCAGTAACCATTGATTACTGCCACTCAT  750

seq1  AGAAATTCAGTGCAGTGATTTTCATAGAGCATATGTCATCACACTGAGCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTCAGTGCAGTGATTTTCATAGAGCATATGTCATCACACTGAGCT  800

seq1  ACATTCATTTTT--ATTGCTGTGATGAAACACCCTAACCAAAAAACAAAC  848
      ||||||||||||   |||||||||||||||||||||||| ||||||||||
seq2  ACATTCATTTTTTATTTGCTGTGATGAAACACCCTAACC-AAAAACAAAC  849

seq1  AAACAAACAAACAAGCAAACAAACAAAAAAATAAATAAAACAAACAAAAA  898
      |||||||||||||||||||||||||||||| ||||| ||||||   ||||
seq2  AAACAAACAAACAAGCAAACAAACAAAAAATTAAAT-AAACAA--CAAAA  896

seq1  AAACCCAGCTTAAATAGAAAGGGTTTATTTATTTTAGCTTACAGTTACAG  948
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAACCCAGCTT-AATAGAAAGGGTTTATTTATTTTAGCTTACAGTTACAG  945

seq1  CTTACAGTTCAAATTACAGGGAAGCCAAAATTTCAAAAACTTGAAGCAAC  998
      ||||||| ||||||||||||| |||||||||||| ||||||   ||| ||
seq2  CTTACAG-TCAAATTACAGGG-AGCCAAAATTTC-AAAACT--GAGC-AC  989

seq1  TGTG-TATATCATATCCACAGTCAAGAGCAGAGATAAATAAATGCATGCA  1047
      |||| |||||||||| ||||||| |||||||||||||   ||||||||||
seq2  TGTGTTATATCATAT-CACAGTC-AGAGCAGAGATAA--TAATGCATGCA  1035

seq1  TGCTAGTC  1055
      ||||||||
seq2  TGCTAGTC  1043