BAC Information

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BAC

Clone NameB6Ng01-112F05
Chromosome12 (Build37)
Map Location 58,752,157 - 58,874,867
singlet/doubletdoublet
Overlap geneBC042761
Upstream genePax9, Slc25a21, AU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600
Downstream geneSstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112F05.bB6Ng01-112F05.g
ACCDH918419DH918420
length1,1061,219
definitionDH918419|Mus musculus domesticus DNA, BAC clone: B6Ng01-112F05, 5' end.DH918420|Mus musculus domesticus DNA, BAC clone: B6Ng01-112F05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,752,157 - 58,753,274)(58,873,625 - 58,874,867)
sequence
gaattcactgtctcttcagaaatgcattatttgggaaagtttctgatgat
ttaaatgtcttctttactaatttttgagttatttatgccaagttgttttt
gagtcaactgataactcattacagaaagccgtgtgttttatgagacacat
gttctatgtatagagttggccatgtttttctgtcagttttgagctctatt
tgtaatgttgcagtttccttcctgtttcttacaagttttatatctataat
aggatttttaaaagcaatttaactttcttgtttcttttctttgttttcag
ttgtaaactctatcttttatcaaactaccatacttgcaccagtagagaac
aaccactgctggtacatttttactaagatttatgatattcagtgtccaaa
ctatttattgtggcctaccggcaggaaaagaaagagtatattctatctgc
tttgattaaaaatattttggattaattattacatcattgtgatactgtga
agtatcacagtcttttctattttggtttttttacttcatcacttattata
gaatgtttatattctgtttaataattgtattattttctactgaaatttaa
ttaggttctttttgttttaaagtaatataaatataacttaagacttttgt
ataaagcttttagtttattgcaccaattcttacttagtgtcttcatttat
ttttgaaacagctcttttcttgatggggggatagttttcattttcttttg
cttataccacttaggtaggaaggggttttaaaagcttaaagaagttttga
tactgttttctttaaagtttattcttaatatttaataacatacagtatat
ctttagactacatgtgttttgaaattggttgctatttgtattgtggttta
ttgaatatcccagcatttgttgactaagccgatggcattgtttgaaggtt
ccttgtttgcactgagccagcctagcagaacatagttgtggaatcagagc
ctgggatttgatccctttctgctcctgaaatccattgtttttgtatggta
aggagctttgagatttagggcctcacctgtgcagaaaaacttgagtacag
ctggct
gaattctgtgaaggtgcacaggacagctcatcctctcctcatcgaggtcc
atatcccacacccaacagagacagacccatgagtataattcccctgccgt
gcctggtatctgtggtggacaattctagagtacccatcggctttgcagca
ggatctttgaggcctgcactgaactgagcgaactcaacatcccttctgcc
tgaacctgctttccttatgctaggcataaaagctttaagtctgtgccttg
gaatgggtcccagagaatccaatccaaggtagaatccaatcatgtgacag
aacaagagatggaagataaaggggccaattaatgtggatcaatacatgac
tgatgttttcccttccccaccacactagtggcagcaaaccagaagtgtca
gcagaggacatcagtgacctcaggccaagggttccctagctcctgctcac
tgtgatcagctcaggctgttagccccttgccaggtctggctagcattttc
atcttagaaagatgacaggaaggagccgtgatgggccttgtcagggcaga
gtccagtaggagaccagcgttcaaaccacagagaccatgtgaggacaaga
gaaaacacttcacaaagtcacttctgacctccccaaggaggccatggcac
gcacgccagcctcccatctccacctggtgcacaaacatcaacaataataa
taaattaaaaattattttaaaaagaaagtgtgctcacatatactatgacc
cagaaggctaccaagagatagaaaagaaagcacgcttaaaagtatattgc
cagagagcagcaggcaactttaaaacttaatatgaaaaatagaatttgga
cctctgatctggttcctaaacgatttgggaaagaaaatattaagtaggag
gccggttacgagaattgaatctccagcctgggtgcagaactgacttgcaa
tggagtcagccagtctctggccagggaagataggttcacttaaaccatgc
taataacatagcccaatagctgagtctctactgggatcttcctgagtcag
ctactgctaatgtgaactctcttctttcttgcagttcaagatagacgaaa
ggagttggaaggaaagatgtctcaaaaagaatgaaggttgcagaccgtac
cttgagccctttctacaaatactaaaaccttggcctagaacaagaattca
atcttttatctctccccac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_58752157_58753274
seq2: B6Ng01-112F05.b_48_1153

seq1  GAATTCACTGTCTCTTCAGAAATGCATTATTTGGGAAAGTTTCTGATGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTCTCTTCAGAAATGCATTATTTGGGAAAGTTTCTGATGAT  50

seq1  TTAAATGTCTTCTTTACTAATTTTTGAGTTATTTATGCCAAGTTGTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGTCTTCTTTACTAATTTTTGAGTTATTTATGCCAAGTTGTTTTT  100

seq1  GAGTCAACTGATAACTCATTACAGAAAGCCGTGTGTTTTATGAGACACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAACTGATAACTCATTACAGAAAGCCGTGTGTTTTATGAGACACAT  150

seq1  GTTCTATGTATAGAGTTGGCCATGTTTTTCTGTCAGTTTTGAGCTCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATGTATAGAGTTGGCCATGTTTTTCTGTCAGTTTTGAGCTCTATT  200

seq1  TGTAATGTTGCAGTTTCCTTCCTGTTTCTTACAAGTTTTATATCTATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGTTGCAGTTTCCTTCCTGTTTCTTACAAGTTTTATATCTATAAT  250

seq1  AGGATTTTTAAAAGCAATTTAACTTTCTTGTTTCTTTTCTTTGTTTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTTAAAAGCAATTTAACTTTCTTGTTTCTTTTCTTTGTTTTCAG  300

seq1  TTGTAAACTCTATCTTTTATCAAACTACCATACTTGCACCAGTAGAGAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAACTCTATCTTTTATCAAACTACCATACTTGCACCAGTAGAGAAC  350

seq1  AACCACTGCTGGTACATTTTTACTAAGATTTATGATATTCAGTGTCCAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACTGCTGGTACATTTTTACTAAGATTTATGATATTCAGTGTCCAAA  400

seq1  CTATTTATTGTGGCCTACCGGCAGGAAAAGAAAGAGTATATTCTATCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTTATTGTGGCCTACCGGCAGGAAAAGAAAGAGTATATTCTATCTGC  450

seq1  TTTGATTAAAAATATTTTGGATTAATTATTACATCATTGTGATACTGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTAAAAATATTTTGGATTAATTATTACATCATTGTGATACTGTGA  500

seq1  AGTATCACAGTCTTTTCTATTTTGGTTTTTTTACTTCATCACTTATTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCACAGTCTTTTCTATTTTGGTTTTTTTACTTCATCACTTATTATA  550

seq1  GAATGTTTATATTCTGTTTAATAATTGTATTATTTTCTACTGAAATTTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTTATATTCTGTTTAATAATTGTATTATTTTCTACTGAAATTTAA  600

seq1  TTAGGTTCTTTTTGTTTTAAAGTAATATAAATATAACTTAAGACTTTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTCTTTTTGTTTTAAAGTAATATAAATATAACTTAAGACTTTTGT  650

seq1  ATAAAGCTTTTAGTTTATTGCACCAATTCTTACTTAGTGTCTTCATTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCTTTTAGTTTATTGCACCAATTCTTACTTAGTGTCTTCATTTAT  700

seq1  TTTTGAAACAGCTCTTTTCTTGATGGGGGGATAGTTTTCATTTTCTTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAACAGCTCTTTTCTTGATGGGGGGATAGTTTTCATTTTCTTTTG  750

seq1  CTTATACCACTTAGGTAGGAAGGGGTTTTAAAAGCTTAAAGAAGTTTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACCACTTAGGTAGGAAGGGGTTTTAAAAGCTTAAAGAAGTTTTGA  800

seq1  TACTGTTTTCTTTAAAGTTTATTCTTAATATTTAATAACATACAGTATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTTTCTTTAAAGTTTATTCTTAATATTTAATAACATACAGTATAT  850

seq1  CTTTAGACTACATGTGTTTTTGAAATTGGTTGCTATTTGTATTGTGGTTT  900
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTTTAGACTACATGTG-TTTTGAAATTGGTTGCTATTTGTATTGTGGTTT  899

seq1  ATTGAATATCCCAGCATTTGTTGACTAAGCCGATGGCATTGTTTGAAGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATATCCCAGCATTTGTTGACTAAGCCGATGGCATTGTTTGAAGGT  949

seq1  TCCTTGTTAGCACTGAGCCAGCCTAAGCAGAACATAGGTTGTGGAATCAG  1000
      |||||||| ||||||||||||||| ||||||||||| |||||||||||||
seq2  TCCTTGTTTGCACTGAGCCAGCCT-AGCAGAACATA-GTTGTGGAATCAG  997

seq1  AGCCTGGGATTTGAATCCCTTTCTGCTCCTGAAATCCATTGTTTTTGTAT  1050
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGCCTGGGATTTG-ATCCCTTTCTGCTCCTGAAATCCATTGTTTTTGTAT  1046

seq1  GTAAAGTAAGCTTTGAGGATTTAAGGAGGCCTCACACTGTGCAGATAAAC  1100
      |  |||  |||||||| ||||||    |||||||| ||||||||| ||||
seq2  GGTAAG-GAGCTTTGA-GATTTA---GGGCCTCAC-CTGTGCAGAAAAAC  1090

seq1  TGAAGTACCCAGCTGGCT  1118
      |  ||||  |||||||||
seq2  TTGAGTA--CAGCTGGCT  1106

seq1: chr12_58873625_58874867
seq2: B6Ng01-112F05.g_66_1284 (reverse)

seq1  GTGGGGGGAGATAAAAAGATTTGAATTCCTTGTCCTAAGCACAAGGTTTT  50
      |||||| ||||| |||||| ||||||| ||||| ||| || |||||  ||
seq2  GTGGGGAGAGAT-AAAAGA-TTGAATT-CTTGTTCTAGGC-CAAGG--TT  44

seq1  TTAGTATTTGGTAGAAAGGGCTCATGTTTACTGTTTCTTGCAAACCTCTC  100
      ||||||||| |||||||||||||| |  ||| ||    ||| ||||| ||
seq2  TTAGTATTT-GTAGAAAGGGCTCAAG-GTACGGT---CTGC-AACCT-TC  87

seq1  A-TCTTTTTGAGCATTCTCTCCTTCAAACTCCTTTTCTGTCCTATCTTGA  149
      | ||||||||||   ||| |||||| |||||||||  |   |||||||| 
seq2  ATTCTTTTTGAGACATCTTTCCTTCCAACTCCTTTCGT---CTATCTTG-  133

seq1  AACTGC-AGTAAGAAGAGAGTTCACATTAGCAGTAGCTGACTCAGTGAGG  198
      |||||| || ||||||||||||||||||||||||||||||||||| || |
seq2  AACTGCAAGAAAGAAGAGAGTTCACATTAGCAGTAGCTGACTCAG-GAAG  182

seq1  ATCCCAGTAGAAGGACTCAGCTATTGGGGCTATGTTATTAGCATGGTTTA  248
      |||||||||||  |||||||||||| ||||||||||||||||||||||||
seq2  ATCCCAGTAGA--GACTCAGCTATT-GGGCTATGTTATTAGCATGGTTTA  229

seq1  AGGTGAACCTATCTTCCCCTGGCCAGGAGACTGGCCTGACTCCATTGCAA  298
      | ||||||||||||| ||||||||| |||||||| ||||||||||||| |
seq2  A-GTGAACCTATCTT-CCCTGGCCA-GAGACTGG-CTGACTCCATTGC-A  274

seq1  AGTCAGTTCTGCACCCAGGCTGGAGATTCAATTCTCGTAACCGGCCTCCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGTTCTGCACCCAGGCTGGAGATTCAATTCTCGTAACCGGCCTCCT  324

seq1  ACTTAATATTTTCTTTCCCAAATCGTTTAGGAACCAGATCAGAGGTCCAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATATTTTCTTTCCCAAATCGTTTAGGAACCAGATCAGAGGTCCAA  374

seq1  ATTCTATTTTTCATATTAAGTTTTAAAGTTGCCTGCTGCTCTCTGGCAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTATTTTTCATATTAAGTTTTAAAGTTGCCTGCTGCTCTCTGGCAAT  424

seq1  ATACTTTTAAGCGTGCTTTCTTTTCTATCTCTTGGTAGCCTTCTGGGTCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTTAAGCGTGCTTTCTTTTCTATCTCTTGGTAGCCTTCTGGGTCA  474

seq1  TAGTATATGTGAGCACACTTTCTTTTTAAAATAATTTTTAATTTATTATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATATGTGAGCACACTTTCTTTTTAAAATAATTTTTAATTTATTATT  524

seq1  ATTGTTGATGTTTGTGCACCAGGTGGAGATGGGAGGCTGGCGTGCGTGCC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTGATGTTTGTGCACCAGGTGGAGATGGGAGGCTGGCGTGCGTGCC  574

seq1  ATGGCCTCCTTGGGGAGGTCAGAAGTGACTTTGTGAAGTGTTTTCTCTTG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCCTCCTTGGGGAGGTCAGAAGTGACTTTGTGAAGTGTTTTCTCTTG  624

seq1  TCCTCACATGGTCTCTGTGGTTTGAACGCTGGTCTCCTACTGGACTCTGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACATGGTCTCTGTGGTTTGAACGCTGGTCTCCTACTGGACTCTGC  674

seq1  CCTGACAAGGCCCATCACGGCTCCTTCCTGTCATCTTTCTAAGATGAAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAAGGCCCATCACGGCTCCTTCCTGTCATCTTTCTAAGATGAAAA  724

seq1  TGCTAGCCAGACCTGGCAAGGGGCTAACAGCCTGAGCTGATCACAGTGAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCCAGACCTGGCAAGGGGCTAACAGCCTGAGCTGATCACAGTGAG  774

seq1  CAGGAGCTAGGGAACCCTTGGCCTGAGGTCACTGATGTCCTCTGCTGACA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGCTAGGGAACCCTTGGCCTGAGGTCACTGATGTCCTCTGCTGACA  824

seq1  CTTCTGGTTTGCTGCCACTAGTGTGGTGGGGAAGGGAAAACATCAGTCAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTTTGCTGCCACTAGTGTGGTGGGGAAGGGAAAACATCAGTCAT  874

seq1  GTATTGATCCACATTAATTGGCCCCTTTATCTTCCATCTCTTGTTCTGTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGATCCACATTAATTGGCCCCTTTATCTTCCATCTCTTGTTCTGTC  924

seq1  ACATGATTGGATTCTACCTTGGATTGGATTCTCTGGGACCCATTCCAAGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATTGGATTCTACCTTGGATTGGATTCTCTGGGACCCATTCCAAGG  974

seq1  CACAGACTTAAAGCTTTTATGCCTAGCATAAGGAAAGCAGGTTCAGGCAG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGACTTAAAGCTTTTATGCCTAGCATAAGGAAAGCAGGTTCAGGCAG  1024

seq1  AAGGGATGTTGAGTTCGCTCAGTTCAGTGCAGGCCTCAAAGATCCTGCTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATGTTGAGTTCGCTCAGTTCAGTGCAGGCCTCAAAGATCCTGCTG  1074

seq1  CAAAGCCGATGGGTACTCTAGAATTGTCCACCACAGATACCAGGCACGGC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCGATGGGTACTCTAGAATTGTCCACCACAGATACCAGGCACGGC  1124

seq1  AGGGGAATTATACTCATGGGTCTGTCTCTGTTGGGTGTGGGATATGGACC  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAATTATACTCATGGGTCTGTCTCTGTTGGGTGTGGGATATGGACC  1174

seq1  TCGATGAGGAGAGGATGAGCTGTCCTGTGCACCTTCACAGAATTC  1243
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGATGAGGAGAGGATGAGCTGTCCTGTGCACCTTCACAGAATTC  1219