BAC Information

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BAC

Clone NameB6Ng01-112G02
Chromosome12 (Build37)
Map Location 61,822,611 - 61,823,708
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622488, LOC665665, Ppia-ps12_475.1
Downstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112G02.bB6Ng01-112G02.g
ACCDH918461DH918462
length1,0821,243
definitionDH918461|Mus musculus domesticus DNA, BAC clone: B6Ng01-112G02, 5' end.DH918462|Mus musculus domesticus DNA, BAC clone: B6Ng01-112G02, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactcctagtcactcccattctcggggtgtaatagtgggggcaag
caacgaatcaggagctgtcacgccatatcaggtgctgaaacgtcacgctg
cgggttataaaagcagtgccattttcctggttcaggatcttcctgagagc
aagcaataaagctcttgccgcggaagattctggtttgttgcatctttctt
gccggtcgagcgggacgcaatactaaatcacctaactccttctcagaaca
ggcttataatcggtaagaaatctagtttggttatttataaaccattttgc
ttagggtatattgtcattgaaacccaagtaggcaaagacaataatgaata
taactagtcaaattaagttcatattcactaaaagcacaaaacagaatcat
tttgttttcaataatttgttagaaacataactgagattttaccctaattt
tcctaatgagatttcaagtcatttgtaagcacattaaaaattatttaatt
actttgaaatcctttttttctagcatatttttgcctttctctctgtactc
ttaaatttgccatcattatgcagagtcaacaacaaactcagaaataaatt
aagtagctagatcacatatgcatggcaaataatcatgaaaacaatatata
agataagtttatttgaggtacttgggaatgtggaaatgataatgaaagtc
tgttttgggccagatgacagcaaacaatgaaatgcaatcattactgttac
cccaagagttaattaataggtactacctttagctaattgaatggctttga
ggtgacctctcctaaactagactttgcaaatgaaaaatttatagcatgtg
ttatcataacttagaagtgaaaaccatcaaaagcaactttgcaacacaaa
acttctaaattataggttttatttgaaatatattaaaaataatatattag
accctttaggcttctaatgcttatttcacaccttttcttccttttttttt
tttttacagaaactactatttggctttggaatatgagatttaacatgatc
tttagaggcttttacaataaattgaaataggc
gaattcattggcacaggaaaaggcttctagaacaggtaaaagatagcaca
ggtaccaagaccaagatttaataaatgggatctcatgaatacagaacgtt
tgtaaagcaaacaaaaccatcattatagagaagatacgtcctacagtgtg
caaagataatagttactacatatctgaccaaaagttaccaacaagaatag
gcagacatctcaaaaagccaaaacaccaagaaaagagtccaatactttaa
aaaaaaattaaggtattttcaaaatctgaaatacagatggcttagaaata
tgttttaagtattccactatggaaatgcatattaaaattactttgacatt
tttgtcttacacttgccataatcactaacatccaacaaagaaaaaagtga
tggaaaatgctgtaatgaattggggaaagtaggacatttttcactactga
caaaagtgcaaacaagtacaactactctaaattgaataaacaaaattatt
ttcgtggaaattggttacttcattttatatatttttctccttcaagccat
ttgtctgcaactttcataattttatttttctttatttgaataaaattata
ctatgtatctgcaacatatatttattaattacccatcaggtgagggacat
ctaatcttggaactttgctggaagcttctgtcctgctagctagcttgctt
tgcaccagaaagcactttgcatctggtttgggagaaaagacatctgtgtt
cttacagcagagaatcctagggactatgatattagcctcctaagcaagat
gttcccatttgttcaataatgtcatcaatgttataaaagtaaccaaccta
atatcctaattgaatatgaggactgatacaccgtaaacctggttttaaaa
atgtagtgggaagtatatgtggtagggggagaccaaaatactgttataaa
acaaactgacataatgccatactccttttcaaaatagtcatttttttaat
agcatgtacagtctatatcttagccttaatcagatcagacctctgaggat
gcaaagatggaaagctgagactgtatgattgttagcttctaatattcaca
catagaaaaaaccccagtccctcttgatcttgcaatcttttctgttaaag
gttcccttgtgtgtttaagttgggagatccatagagtgaatcacctggct
catggacacctcacacataccatctcttgaattaagtgtttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_61822611_61823708
seq2: B6Ng01-112G02.b_50_1131

seq1  GAATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGGGCAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCTAGTCACTCCCATTCTCGGGGTGTAATAGTGGGGGCAAG  50

seq1  CAACGAATCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGTCACGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGAATCAGGAGCTGTCACGCCATATCAGGTGCTGAAACGTCACGCTG  100

seq1  CGGGTTATAAAAGCAGTGCCATTTTCCTGGTTCAGGATCTTCCTGAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGTTATAAAAGCAGTGCCATTTTCCTGGTTCAGGATCTTCCTGAGAGC  150

seq1  AAGCAATAAAGCTCTTGCCGCGGAAGATTCTGGTTTGTTGCATCTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATAAAGCTCTTGCCGCGGAAGATTCTGGTTTGTTGCATCTTTCTT  200

seq1  GCCGGTCGAGCGGGACGCAATACTAAATCACCTAACTCCTTCTCAGAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGGTCGAGCGGGACGCAATACTAAATCACCTAACTCCTTCTCAGAACA  250

seq1  GGCTTATAATCGGTAAGAAATCTAGTTTGGTTATTTATAAACCATTTTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTATAATCGGTAAGAAATCTAGTTTGGTTATTTATAAACCATTTTGC  300

seq1  TTAGGGTATATTGTCATTGAAACCCAAGTAGGCAAAGACAATAATGAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTATATTGTCATTGAAACCCAAGTAGGCAAAGACAATAATGAATA  350

seq1  TAACTAGTCAAATTAAGTTCATATTCACTAAAAGCACAAAACAGAATCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGTCAAATTAAGTTCATATTCACTAAAAGCACAAAACAGAATCAT  400

seq1  TTTGTTTTCAATAATTTGTTAGAAACATAACTGAGATTTTACCCTAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTCAATAATTTGTTAGAAACATAACTGAGATTTTACCCTAATTT  450

seq1  TCCTAATGAGATTTCAAGTCATTTGTAAGCACATTAAAAATTATTTAATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAATGAGATTTCAAGTCATTTGTAAGCACATTAAAAATTATTTAATT  500

seq1  ACTTTGAAATCCTTTTTTTCTAGCATATTTTTGCCTTTCTCTCTGTACTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAAATCCTTTTTTTCTAGCATATTTTTGCCTTTCTCTCTGTACTC  550

seq1  TTAAATTTGCCATCATTATGCAGAGTCAACAACAAACTCAGAAATAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTGCCATCATTATGCAGAGTCAACAACAAACTCAGAAATAAATT  600

seq1  AAGTAGCTAGATCACATATGCATGGCAAATAATCATGAAAACAATATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGCTAGATCACATATGCATGGCAAATAATCATGAAAACAATATATA  650

seq1  AGATAAGTTTATTTGAGGTACTTGGGAATGTGGAAATGATAATGAAAGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGTTTATTTGAGGTACTTGGGAATGTGGAAATGATAATGAAAGTC  700

seq1  TGTTTTGGGCCAGATGACAGCAAACAATGAAATGCAATCATTACTGTTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGGGCCAGATGACAGCAAACAATGAAATGCAATCATTACTGTTAC  750

seq1  CCCAAGAGTTAATTAATAGGTACTACCTTTAGCTAATTGAATGGCTTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAGTTAATTAATAGGTACTACCTTTAGCTAATTGAATGGCTTTGA  800

seq1  GGTGACCTCTCCTAAAACTAGACTTTGCAAATGAAAAATTTATAGCATGT  850
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GGTGACCTCTCCT-AAACTAGACTTTGCAAATGAAAAATTTATAGCATGT  849

seq1  GTAATCATAACTTAGAAGTGAAAACCATCAAAAGCAAACTTTGCAACACA  900
      || |||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTTATCATAACTTAGAAGTGAAAACCATCAAAAGC-AACTTTGCAACACA  898

seq1  AAACTTCTAAATTATAAGGTTTTAATTTGAAATATATTAAAAATAATATA  950
      ||||||||||||||| ||||||| ||||||||||||||||||||||||||
seq2  AAACTTCTAAATTAT-AGGTTTT-ATTTGAAATATATTAAAAATAATATA  946

seq1  TTAGACTCTTTTATGCTTCTAATGCTTATTTTCACATCTTTTTCTTTCTT  1000
      |||||| | |||| |||||||||||||| ||||||| |||||   ||| |
seq2  TTAGAC-CCTTTAGGCTTCTAATGCTTA-TTTCACACCTTTT--CTTCCT  992

seq1  TTTTTTTTTTTTTACAGAAACTACTATTTGGCTTTGAATATTTGAGATTT  1050
      |||||||||||||||||||||||||||||||||||| | || ||||||||
seq2  TTTTTTTTTTTTTACAGAAACTACTATTTGGCTTTGGA-ATATGAGATTT  1041

seq1  ATACATGATCTTTTAGAGGCTTTATAACAATAAAAATTGAAAATAGGC  1098
      | |||||||| |||||||||||  | |||||  |||||| ||||||||
seq2  A-ACATGATC-TTTAGAGGCTT--TTACAAT--AAATTG-AAATAGGC  1082