BAC Information

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BAC

Clone NameB6Ng01-113D03
Chromosome12 (Build37)
Map Location 82,100,927 - 82,263,223
singlet/doubletdoublet
Overlap geneSmoc1
Upstream geneZfp36l1, Actn1, Wdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1
Downstream geneSlc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9, Pcnx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113D03.bB6Ng01-113D03.g
ACCDH919052DH919053
length1,0401,069
definitionDH919052|Mus musculus domesticus DNA, BAC clone: B6Ng01-113D03, 5' end.DH919053|Mus musculus domesticus DNA, BAC clone: B6Ng01-113D03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,262,179 - 82,263,223)(82,100,927 - 82,102,013)
sequence
gaattctttttaagtcttggaactgattgcttacatcgcaattgcgaggc
agtcctgggccaaacaacagagtcaggctgctcagccaaatggacatact
aaaggaagtgaagcagcataaaaacttcaggaaagatgagacaaatacct
agaaaacctgaggagtcgtgagccagatatggtggtacatatctggaatc
tcagcaaaggtcagaggtggatggagtggaggagctaaagaagaaagatc
aggagtctgaagctagcctgggctacattgtgagatcttatatcaagaac
acaaacaaaaaactgcagcctgggaggatgctctgaccaaggaagttgtc
tctctggataaatacctagtagttctttaaaggagcctctttagtcctcc
tgagagttgcttatgttgttgcaataaacaatgagagacagcagggattg
taggacttaggacagtgtctggagagaggaggacccagcatgggactgtg
ggtgacaaaacattctaggaggatgccataaaaaaagtgctgggggctcg
tatgagccagggctgctgaatggttatatactgagtttgataccatatta
ggctctgagaaggccaggaaatttctgagaattatatgatccattaggaa
gaactaaccctgatatgtcagcctatcctcactcaaggtctttctctgtc
cctgaagccatccaagggctcctcattggaaggaggccagggagcagccc
tggctctgctgagagccttcgtactgtgactctaaccaactgtaagtgct
tacaggttaggacttcatcacctccctcctgcccaccctctttttttaaa
aaaattatttatttacataagtacactgtagctgccttcagacacaccag
aaaagggcgtcagatctcattatgggtggttgtgagccactatgtggctg
ctgggatttgactcaggaccttcggagagcagttagtgctcttacagctg
agccatcttgccagcccccttgctcacttctcaccacccc
gaattcctcttggattcttaaacatcagtcctgtggtttgcagagcatgt
ggcggaaagggtgattggaattagacaaggccaaatttcataccgaatct
gaaggagcccagagtgcaaggaaacttgacttgggtgtctgtctgcccac
atcctcacaggccccaatgggctaagagtggccacagtccctccaactgt
ccccttcgtttctctttactaagactgtctcaagccagcgctgggcactg
gaagagcctaaaacatcagagaaagtcctggtgaagggtggcatgaggga
agtggacactgccagggcaaaaatagagccttaacctggcactgaaataa
gtaaggaggggacctcatgtggggcagcctgtcctgttgctggtccacta
ttactaggaagaccgtataacctgattttcacttctgactgcaacttgtg
agtgattctaaaatagtcacctctattccccaacctactatggtgttcag
tggctgtaacctactgatcatttctgtttcccaggccccaaagcttaccc
gagccactcaaaagccagtcccaggctccagagccacagagaccggagac
ctgtttcaggtctccattttttcctacgaggttgggctcccatgtgttcg
ttcacgttcctagtcccactctgtggatctgatagaaaggtcatcactga
agacacccgggggagttcatttccacacgaacaggtgttagggatcccca
ggctgtaggtgtgtcctcaaaacttctcggctgtaccctttgcgtttatg
tctgggtggggtgctcaaaggagttaacccttagggttggaggggctcaa
aagaacaacacctggaaggaagggaaaatgggttaggaaagtgttcagca
gtcggaggtgaagcgtgtcttagttagggcttcttgctttaagaaacacc
acacaacgcactcttataaggaagcctttaatttgggcaagcttatgttt
tataggtcagtcattatcttctggcagaagctggcatctgcagcagacac
agtgttggagaaaggagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_82262179_82263223
seq2: B6Ng01-113D03.b_49_1088 (reverse)

seq1  GGGGTGGTGAAGAGGTGAGCAGGGGGGCTGGCAAGATGGCTCAGCTGGTA  50
      ||||||||| ||| ||||||| |||||||||||||||||||||||| |||
seq2  GGGGTGGTG-AGAAGTGAGCAAGGGGGCTGGCAAGATGGCTCAGCT-GTA  48

seq1  AGAGCACTGACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAGCCA  100
      |||||||| ||||||| ||||||||||||||| |||||||||||||||||
seq2  AGAGCACTAACTGCTC-TCCGAAGGTCCTGAG-TCAAATCCCAGCAGCCA  96

seq1  CATAGTGGCTCACAACCACCCATAATGAGATCTGACGCCCTTTTCTGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTGGCTCACAACCACCCATAATGAGATCTGACGCCCTTTTCTGGTG  146

seq1  TGTCTGAAGGCAGCTACAGTGTACTTATGTATAATAAATAATTTTTTTAA  200
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TGTCTGAAGGCAGCTACAGTGTACTTATGTA-AATAAATAATTTTTTTAA  195

seq1  AAAAAAGAGGTGGGCAGGAGGGAGGTGATGAAGTCCTAACCTGTAAGCAC  250
      |||||   ||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAGGGTGGGCAGGAGGGAGGTGATGAAGTCCTAACCTGTAAGCAC  245

seq1  TTACAGTTGGTTAGAGTCACAGTACGAAGGCTCTCAGCAGAGCCAGGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGTTGGTTAGAGTCACAGTACGAAGGCTCTCAGCAGAGCCAGGGCT  295

seq1  GCTCCCTGGCCTCCTTCCAATGAGGAGCCCTTGGATGGCTTCAGGGACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTGGCCTCCTTCCAATGAGGAGCCCTTGGATGGCTTCAGGGACAG  345

seq1  AGAAAGACCTTGAGTGAGGATAGGCTGACATATCAGGGTTAGTTCTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGACCTTGAGTGAGGATAGGCTGACATATCAGGGTTAGTTCTTCCT  395

seq1  AATGGATCATATAATTCTCAGAAATTTCCTGGCCTTCTCAGAGCCTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATCATATAATTCTCAGAAATTTCCTGGCCTTCTCAGAGCCTAATA  445

seq1  TGGTATCAAACTCAGTATATAACCATTCAGCAGCCCTGGCTCATACGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATCAAACTCAGTATATAACCATTCAGCAGCCCTGGCTCATACGAGC  495

seq1  CCCCAGCACTTTTTTTATGGCATCCTCCTAGAATGTTTTGTCACCCACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAGCACTTTTTTTATGGCATCCTCCTAGAATGTTTTGTCACCCACAG  545

seq1  TCCCATGCTGGGTCCTCCTCTCTCCAGACACTGTCCTAAGTCCTACAATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCATGCTGGGTCCTCCTCTCTCCAGACACTGTCCTAAGTCCTACAATC  595

seq1  CCTGCTGTCTCTCATTGTTTATTGCAACAACATAAGCAACTCTCAGGAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGTCTCTCATTGTTTATTGCAACAACATAAGCAACTCTCAGGAGG  645

seq1  ACTAAAGAGGCTCCTTTAAAGAACTACTAGGTATTTATCCAGAGAGACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGAGGCTCCTTTAAAGAACTACTAGGTATTTATCCAGAGAGACAA  695

seq1  CTTCCTTGGTCAGAGCATCCTCCCAGGCTGCAGTTTTTTGTTTGTGTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTTGGTCAGAGCATCCTCCCAGGCTGCAGTTTTTTGTTTGTGTTCT  745

seq1  TGATATAAGATCTCACAATGTAGCCCAGGCTAGCTTCAGACTCCTGATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAAGATCTCACAATGTAGCCCAGGCTAGCTTCAGACTCCTGATCT  795

seq1  TTCTTCTTTAGCTCCTCCACTCCATCCACCTCTGACCTTTGCTGAGATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTAGCTCCTCCACTCCATCCACCTCTGACCTTTGCTGAGATTC  845

seq1  CAGATATGTACCACCATATCTGGCTCACGACTCCTCAGGTTTTCTAGGTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATATGTACCACCATATCTGGCTCACGACTCCTCAGGTTTTCTAGGTA  895

seq1  TTTGTCTCATCTTTCCTGAAGTTTTTATGCTGCTTCACTTCCTTTAGTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCATCTTTCCTGAAGTTTTTATGCTGCTTCACTTCCTTTAGTAT  945

seq1  GTCCATTTGGCTGAGCAGCCTGACTCTGTTGTTTGGCCCAGGACTGCCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATTTGGCTGAGCAGCCTGACTCTGTTGTTTGGCCCAGGACTGCCTC  995

seq1  GCAATTGCGATGTAAGCAATCAGTTCCAAGACTTAAAAAGAATTC  1045
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTGCGATGTAAGCAATCAGTTCCAAGACTTAAAAAGAATTC  1040

seq1: chr12_82100927_82102013
seq2: B6Ng01-113D03.g_70_1138

seq1  GAATTCCTCTTGGATTCTTAAACATCAGTCCTGTGGTTTGCAGAGCATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTGGATTCTTAAACATCAGTCCTGTGGTTTGCAGAGCATGT  50

seq1  GGCGGAAAGGGTGATTGGAATTAGACAAGGCCAAATTTCATACCGAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGAAAGGGTGATTGGAATTAGACAAGGCCAAATTTCATACCGAATCT  100

seq1  GAAGGAGCCCAGAGTGCAAGGAAACTTGACTTGGGTGTCTGTCTGCCCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAGCCCAGAGTGCAAGGAAACTTGACTTGGGTGTCTGTCTGCCCAC  150

seq1  ATCCTCACAGGCCCCAATGGGCTAAGAGTGGCCACAGTCCCTCCAACTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCACAGGCCCCAATGGGCTAAGAGTGGCCACAGTCCCTCCAACTGT  200

seq1  CCCCTTCGTTTCTCTTTACTAAGACTGTCTCAAGCCAGCGCTGGGCACTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCGTTTCTCTTTACTAAGACTGTCTCAAGCCAGCGCTGGGCACTG  250

seq1  GAAGAGCCTAAAACATCAGAGAAAGTCCTGGTGAAGGGTGGCATGAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGCCTAAAACATCAGAGAAAGTCCTGGTGAAGGGTGGCATGAGGGA  300

seq1  AGTGGACACTGCCAGGGCAAAAATAGAGCCTTAACCTGGCACTGAAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGACACTGCCAGGGCAAAAATAGAGCCTTAACCTGGCACTGAAATAA  350

seq1  GTAAGGAGGGGACCTCATGTGGGGCAGCCTGTCCTGTTGCTGGTCCACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGGAGGGGACCTCATGTGGGGCAGCCTGTCCTGTTGCTGGTCCACTA  400

seq1  TTACTAGGAAGACCGTATAACCTGATTTTCACTTCTGACTGCAACTTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGGAAGACCGTATAACCTGATTTTCACTTCTGACTGCAACTTGTG  450

seq1  AGTGATTCTAAAATAGTCACCTCTATTCCCCAACCTACTATGGTGTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATTCTAAAATAGTCACCTCTATTCCCCAACCTACTATGGTGTTCAG  500

seq1  TGGCTGTAACCTACTGATCATTTCTGTTTCCCAGGCCCCAAAGCTTACCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTAACCTACTGATCATTTCTGTTTCCCAGGCCCCAAAGCTTACCC  550

seq1  GAGCCACTCAAAAGCCAGTCCCAGGCTCCAGAGCCACAGAGACCGGAGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCACTCAAAAGCCAGTCCCAGGCTCCAGAGCCACAGAGACCGGAGAC  600

seq1  CTGTTTCAGGTCTCCATTTTTTCCTACGAGGTTGGGCTCCCATGTGTTCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCAGGTCTCCATTTTTTCCTACGAGGTTGGGCTCCCATGTGTTCG  650

seq1  TTCACGTTCCTAGTCCCACTCTGTGGATCTGATAGAAAGGTCATCACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGTTCCTAGTCCCACTCTGTGGATCTGATAGAAAGGTCATCACTGA  700

seq1  AGACACCCGGGGGAGTTCATTTCCACACGAACAGGTGTTAGGGATCCCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACCCGGGGGAGTTCATTTCCACACGAACAGGTGTTAGGGATCCCCA  750

seq1  GGCTGTAGGTGTGTCCTCAAAACTTCTCGGCTGTACCCTTTGCGTTTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTAGGTGTGTCCTCAAAACTTCTCGGCTGTACCCTTTGCGTTTATG  800

seq1  TCTGGGTGGGGTGCTCAAAGGAGTTAACCCTTAGGGTTGGAGGGGCTCAA  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCTGGGTGGGGTGCTCAAAGGAGTTAACCCTTAGGGTTGGAGGGGCTC-A  849

seq1  AAAGAACAACACCTGGAAGGAAGGGAAAATGGGTTAGGAAAGGTGTCTCA  900
      ||||||||||||||||||||||||||||||||||||||||| |||| |||
seq2  AAAGAACAACACCTGGAAGGAAGGGAAAATGGGTTAGGAAA-GTGT-TCA  897

seq1  GCAGTTCGGAGGGTGAAGCGTGTCTTAGTTAGGGCTTCATTGCTTTGAAG  950
      |||| ||||| ||||||||||||||||||||||||||| ||||||| |||
seq2  GCAG-TCGGA-GGTGAAGCGTGTCTTAGTTAGGGCTTC-TTGCTTT-AAG  943

seq1  AGACACCACAACAACGGCAACTCTTATAAAGGAAGCCATTTAATTGGGGC  1000
      | ||||||| ||||||   |||||||| ||||||||| ||||||| ||||
seq2  AAACACCAC-ACAACG--CACTCTTAT-AAGGAAGCC-TTTAATTTGGGC  988

seq1  AAGCTTATGGTTTTAGAGGTTCAGTCCATTATCATCATGGCAGGAAGCAT  1050
      |||||||| |||||| ||| ||||| ||||||| || ||||| ||||| |
seq2  AAGCTTAT-GTTTTATAGG-TCAGT-CATTATCTTC-TGGCA-GAAGC-T  1032

seq1  GGCAGCTGCAGGCAGACACGGTGTTGGAG-AAGGAGCT  1087
      |||| ||||| |||||||| ||||||||| ||||||||
seq2  GGCATCTGCA-GCAGACACAGTGTTGGAGAAAGGAGCT  1069