BAC Information

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BAC

Clone NameB6Ng01-113H20
Chromosome12 (Build37)
Map Location 66,033,144 - 66,158,871
singlet/doubletdoublet
Overlap geneKlhl28, A430041B07Rik, Prpf39
Upstream geneLOC435302, EG623046, LOC623123, LOC217645, LOC217647, Gm527
Downstream geneFkbp3, Fancm, C79407, Wdr20b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113H20.bB6Ng01-113H20.g
ACCDH919270DH919271
length1,1351,223
definitionDH919270|Mus musculus domesticus DNA, BAC clone: B6Ng01-113H20, 5' end.DH919271|Mus musculus domesticus DNA, BAC clone: B6Ng01-113H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,033,144 - 66,034,267)(66,157,650 - 66,158,871)
sequence
gaattcatttccgttgtatacatacctaggagtaggattgctggaatata
tatatatggtcattccatttttttaaagatttattttaattttgaatcat
ttatgtatctatgtgtgttcacacaagtgcagattccctaggtcagatgt
gagaggcatcaggtccctgaagaactgaagtaagttatgagctgcctatg
tgtgtgctgtgaactaaaactgtttctttcagaagaacaacttagccatc
tctgctgcctggtagttcctttaataaaataataaataaataaataaata
aataaacaaacataagaagaataaatcatcttttgttgattgggaaaaaa
cagaaggaaataatgtaaaagacaaaaagatatccgttggtcacagcttc
catgaagattcaatccaaaagactggctttcaccaccctatatctttttt
aaccatttatcaactgtcaaagaagcttccaacacatgagcctccagtga
acatctcattatcaggccactatgtgtctatactttttttccataatagt
ttactaatttacatatccaccaactaagtgcaagtatttccttttcgttt
ttaccaacagaaatgttttatttgtttttttcattatcatgactctaact
ggagtgaagtaatttttaaatttaatttccatttccaggatgctgagtat
ttttcataattttattggccatttgtatgattctgagaaatgtctactac
tcaggtttttttctttagtttttgtatatttttgccttttagccttatca
gatgtataatttgcagataacttctccattttagaacacttttccccatg
cttattgtctagtacactgtcatatgtctactttgactttcattttctgg
gctttgggggattgtctaaaactatagtttgcctgttatgatattttgga
aacacttcatgagtcttttgttataagttatttcgtagcttcaagtttta
catttaagcctctgatccaatgtggagctgctgtgttttatattgtgtgg
gtattgtcatgtaaccatgtggcaatgtcatgtgggaacaaaacgacaac
ctcacatgtcattcccttggtttttttgttccaca
gaattccacttttctttgagaaaatgtaattctcattttaataggcaatg
aaccatgtatggctttgtcaaagcaattgaggatattttcttcattttgc
ttgaggtcacaactgtattccatttcaagtaaattgaggtataactttgt
gttctcctgagtaaaaagcagtatcaatagcattcttagaatattttgat
taaagcataaatatgtaagattaaaatatactcgtgtatgttgtcagtgt
gcatacatagcgaagtaaaatatactcttcaggaaatatgtttcctgtcc
cgtggtgctgcatgctgagtactgtacataaatattctattactgggaca
caatccttattatgtttctttagcaatactaataggttatgacaccaccc
atcatttcccatagttgcaagtgtgtttttacatgctaattaattgaagt
tcattatcctgttaattgactagatgactaaaaataaaaatttgaaaaca
caatataaaagcattatctgtatactacccctctaattgtgactataaat
aattataaacttgtatcatcaacaggcccaataaagtttaaagtctacaa
aatgatcctgatgtggcagcacatgcctttaatcccagcactcgggaggg
aggcagagacaagtggatccctgtgcgtttgaggacagcctggtctacaa
aacaagcccatgacaggcagcgctggttacattgagaaaccctgtcttaa
aaaacaacaacagggctggtgagatggctcagtgggtaagagcacccgac
tgctcttccgaaggtccagagttcaaatcccagtcaaccacatggtggct
cacaaccatctgtaacgagatctgacgcccttcttctggtgtgtctgaga
cagctacagtgtacttacatgtaataaataaatcttaaaaaaaaaaaaca
acaaaaatcaaacaacataatcctaaaaataagacacttccactagtttt
tattccctgtttcataaaaggaacggcctgcaagatgagtgtcactatac
tgcttagctactggtatggctttgtttccaaatgctgctcccaagggcaa
ctgatccttaacaaccatcaaggttctacattcggaaggtaattcaaaga
tccaaatatttacaacctgagtaaaccataacgtcgtcacactttaaacc
caagaaaggaaagaaaatattat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_66033144_66034267
seq2: B6Ng01-113H20.b_49_1183

seq1  GAATTCATTTCCGTTGTATACATACCTAGGAGTAGGATTGCTGGAATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTTCCGTTGTATACATACCTAGGAGTAGGATTGCTGGAATATA  50

seq1  TATATATGGTCATTCCATTTTTTTAAAGATTTATTTTAATTTTGAATCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGGTCATTCCATTTTTTTAAAGATTTATTTTAATTTTGAATCAT  100

seq1  TTATGTATCTATGTGTGTTCACACAAGTGCAGATTCCCTAGGTCAGATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTATCTATGTGTGTTCACACAAGTGCAGATTCCCTAGGTCAGATGT  150

seq1  GAGAGGCATCAGGTCCCTGAAGAACTGAAGTAAGTTATGAGCTGCCTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCATCAGGTCCCTGAAGAACTGAAGTAAGTTATGAGCTGCCTATG  200

seq1  TGTGTGCTGTGAACTAAAACTGTTTCTTTCAGAAGAACAACTTAGCCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCTGTGAACTAAAACTGTTTCTTTCAGAAGAACAACTTAGCCATC  250

seq1  TCTGCTGCCTGGTAGTTCCTTTAATAAAATAATAAATAAATAAATAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGCCTGGTAGTTCCTTTAATAAAATAATAAATAAATAAATAAATA  300

seq1  AATAAACAAACATAAGAAGAATAAATCATCTTTTGTTGATTGGGAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAACAAACATAAGAAGAATAAATCATCTTTTGTTGATTGGGAAAAAA  350

seq1  CAGAAGGAAATAATGTAAAAGACAAAAAGATATCCGTTGGTCACAGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGGAAATAATGTAAAAGACAAAAAGATATCCGTTGGTCACAGCTTC  400

seq1  CATGAAGATTCAATCCAAAAGACTGGCTTTCACCACCCTATATCTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGATTCAATCCAAAAGACTGGCTTTCACCACCCTATATCTTTTTT  450

seq1  AACCATTTATCAACTGTCAAAGAAGCTTCCAACACATGAGCCTCCAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATTTATCAACTGTCAAAGAAGCTTCCAACACATGAGCCTCCAGTGA  500

seq1  ACATCTCATTATCAGGCCACTATGTGTCTATACTTTTTTTCCATAATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTCATTATCAGGCCACTATGTGTCTATACTTTTTTTCCATAATAGT  550

seq1  TTACTAATTTACATATCCACCAACTAAGTGCAAGTATTTCCTTTTCGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAATTTACATATCCACCAACTAAGTGCAAGTATTTCCTTTTCGTTT  600

seq1  TTACCAACAGAAATGTTTTATTTGTTTTTTTCATTATCATGACTCTAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAACAGAAATGTTTTATTTGTTTTTTTCATTATCATGACTCTAACT  650

seq1  GGAGTGAAGTAATTTTTAAATTTAATTTCCATTTCCAGGATGCTGAGTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTGAAGTAATTTTTAAATTTAATTTCCATTTCCAGGATGCTGAGTAT  700

seq1  TTTTCATAATTTTATTGGCCATTTGTATGATTCTGAGAAATGTCTACTAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATAATTTTATTGGCCATTTGTATGATTCTGAGAAATGTCTACTAC  750

seq1  TCAGGTTTTTTTCTTTAGTTTTTGTATATTTTTGCCTTTTAGCCTTATCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTTTTTTCTTTAGTTTTTGTATATTTTTGCCTTTTAGCCTTATCA  800

seq1  GATGTATAATTTGCAGATAACTTCTCCATTTTAGAACACTTTTCCCCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTATAATTTGCAGATAACTTCTCCATTTTAGAACACTTTTCCCCATG  850

seq1  CTTATTGTCTAGTACACTGTCATATGTCTACTTTGACTTTCATTTTCTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTGTCTAGTACACTGTCATATGTCTACTTTGACTTTCATTTTCTGG  900

seq1  GCTTTGGGGGATTGTCTAAAACTATAG-TTGCCTGTTATGATATTTT-GA  948
      ||||||||||||||||||||||||||| ||||||||||||||||||| ||
seq2  GCTTTGGGGGATTGTCTAAAACTATAGTTTGCCTGTTATGATATTTTGGA  950

seq1  AACACTTCATGAGTCTTTTGTTAT-AGTTATTTCGTAGCTTCAAGTTTTA  997
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AACACTTCATGAGTCTTTTGTTATAAGTTATTTCGTAGCTTCAAGTTTTA  1000

seq1  CATTTAAGCCTCTGATCCATTGT-GAGCTGCTGTG-TGTATATTGTGTGT  1045
      ||||||||||||||||||| ||| ||||||||||| | ||||||||||| 
seq2  CATTTAAGCCTCTGATCCAATGTGGAGCTGCTGTGTTTTATATTGTGTGG  1050

seq1  AT-TTGTCCATGTACCCATGTG--CATGTCATGTGGGAACCAAACGACAA  1092
       | |||| |||||| |||||||   ||||||||||||||| |||||||||
seq2  GTATTGT-CATGTAACCATGTGGCAATGTCATGTGGGAACAAAACGACAA  1099

seq1  CCTCACATGTCATTCCTTTG---TTTTTG-TCCACA  1124
      |||||||||||||||| |||   |||||| ||||||
seq2  CCTCACATGTCATTCCCTTGGTTTTTTTGTTCCACA  1135

seq1: chr12_66157650_66158871
seq2: B6Ng01-113H20.g_69_1290 (reverse)

seq1  TAATATTT--TTTCTTTCTTTGTGTTTAAAGTGTGCGAAAGTTATGGTTA  48
      ||||||||  |||| ||  ||| ||||||||||||   | ||||||||| 
seq2  TAATATTTTCTTTCCTTTCTTGGGTTTAAAGTGTGACGACGTTATGGTTT  50

seq1  CTTAAAGTTGTAAATATTGTGATCTTTGTAATTAACTTTCAGAAATTGTA  98
        | | ||||||||||||  |||||||| |||| || ||| |||  ||||
seq2  ACTCAGGTTGTAAATATTTGGATCTTTG-AATT-ACCTTCCGAA--TGTA  96

seq1  GAAACTTGATGGTTGTTAAGGATCAGTGGCC--TGGGAGCAGCATTTGTG  146
      ||| ||||||||||||||||||||||| |||  |||||||||||||||  
seq2  GAACCTTGATGGTTGTTAAGGATCAGTTGCCCTTGGGAGCAGCATTTGGA  146

seq1  AACAAAG-CATAACAGTAGCAAAGCAGTATAGTGACACTCATCTTGCAAG  195
      ||||||| |||| ||||||| ||||||||||||||||||||||||||| |
seq2  AACAAAGCCATACCAGTAGCTAAGCAGTATAGTGACACTCATCTTGCAGG  196

seq1  CCGTTCCTTTTATGAAACAGGGAATAAAAACTAGTGGAAGTGTCTTATTT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTCCTTTTATGAAACAGGGAATAAAAACTAGTGGAAGTGTCTTATTT  246

seq1  TTAGGATTATGTTGTTTGATTTTTGTTGTTTTTTTTTTTTAAAGATTTAT  295
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTAGGATTATGTTGTTTGATTTTTGTTGTTTTTTTTTTTT-AAGATTTAT  295

seq1  TTATTACATGTAAGTACACTGTAGCTGTCTTCAGACACACCAGAAG-AGG  344
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  TTATTACATGTAAGTACACTGTAGCTGTC-TCAGACACACCAGAAGAAGG  344

seq1  GCGTCAGATCTCGTTACAGATGGTTGTGAGCCACCATGTGGTTGACTGGG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTCAGATCTCGTTACAGATGGTTGTGAGCCACCATGTGGTTGACTGGG  394

seq1  ATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGA  444

seq1  GCCATCTCACCAGCCCTGTTGTTGTTTTTTAAGACAGGGTTTCTCAATGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTCACCAGCCCTGTTGTTGTTTTTTAAGACAGGGTTTCTCAATGT  494

seq1  AACCAGCGCTGCCTGTCATGGGCTTGTTTTGTAGACCAGGCTGTCCTCAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCGCTGCCTGTCATGGGCTTGTTTTGTAGACCAGGCTGTCCTCAA  544

seq1  ACGCACAGGGATCCACTTGTCTCTGCCTCCCTCCCGAGTGCTGGGATTAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCACAGGGATCCACTTGTCTCTGCCTCCCTCCCGAGTGCTGGGATTAA  594

seq1  AGGCATGTGCTGCCACATCAGGATCATTTTGTAGACTTTAAACTTTATTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATGTGCTGCCACATCAGGATCATTTTGTAGACTTTAAACTTTATTG  644

seq1  GGCCTGTTGATGATACAAGTTTATAATTATTTATAGTCACAATTAGAGGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTTGATGATACAAGTTTATAATTATTTATAGTCACAATTAGAGGG  694

seq1  GTAGTATACAGATAATGCTTTTATATTGTGTTTTCAAATTTTTATTTTTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTATACAGATAATGCTTTTATATTGTGTTTTCAAATTTTTATTTTTA  744

seq1  GTCATCTAGTCAATTAACAGGATAATGAACTTCAATTAATTAGCATGTAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATCTAGTCAATTAACAGGATAATGAACTTCAATTAATTAGCATGTAA  794

seq1  AAACACACTTGCAACTATGGGAAATGATGGGTGGTGTCATAACCTATTAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACACTTGCAACTATGGGAAATGATGGGTGGTGTCATAACCTATTAG  844

seq1  TATTGCTAAAGAAACATAATAAGGATTGTGTCCCAGTAATAGAATATTTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTAAAGAAACATAATAAGGATTGTGTCCCAGTAATAGAATATTTA  894

seq1  TGTACAGTACTCAGCATGCAGCACCACGGGACAGGAAACATATTTCCTGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGTACTCAGCATGCAGCACCACGGGACAGGAAACATATTTCCTGA  944

seq1  AGAGTATATTTTACTTCGCTATGTATGCACACTGACAACATACACGAGTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTATATTTTACTTCGCTATGTATGCACACTGACAACATACACGAGTA  994

seq1  TATTTTAATCTTACATATTTATGCTTTAATCAAAATATTCTAAGAATGCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAATCTTACATATTTATGCTTTAATCAAAATATTCTAAGAATGCT  1044

seq1  ATTGATACTGCTTTTTACTCAGGAGAACACAAAGTTATACCTCAATTTAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATACTGCTTTTTACTCAGGAGAACACAAAGTTATACCTCAATTTAC  1094

seq1  TTGAAATGGAATACAGTTGTGACCTCAAGCAAAATGAAGAAAATATCCTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGGAATACAGTTGTGACCTCAAGCAAAATGAAGAAAATATCCTC  1144

seq1  AATTGCTTTGACAAAGCCATACATGGTTCATTGCCTATTAAAATGAGAAT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCTTTGACAAAGCCATACATGGTTCATTGCCTATTAAAATGAGAAT  1194

seq1  TACATTTTCTCAAAGAAAAGTGGAATTC  1222
      ||||||||||||||||||||||||||||
seq2  TACATTTTCTCAAAGAAAAGTGGAATTC  1222