BAC Information

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BAC

Clone NameB6Ng01-114E19
Chromosome12 (Build37)
Map Location 86,463,343 - 86,631,077
singlet/doubletdoublet
Overlap geneDlst, Rps6kl1, LOC100042021, Pgf, Eif2b2, Mlh3, Acyp1, 2810002I04Rik
Upstream geneDnalc1, Pnma1, C130039O16Rik, EG432676, Zadh1, Zfp410, 9830169C18Rik, Coq6, Entpd5, 2900006K08Rik, Rnf113a2, Aldh6a1, Lin52, Chx10, Abcd4, 7420416P09Rik, Tmem90a, Npc2, Isca2, Ltbp2, 1110018G07Rik, Fcf1, Ylpm1, Prox2
Downstream geneNek9, Tmed10, LOC100042549, LOC667119, Fos, EG667124, Jundm2, LOC100042073, Batf, BC011209, 0610007P14Rik, Ttll5, Tgfb3, 1700019E19Rik, 1700020O03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114E19.bB6Ng01-114E19.g
ACCDH919853DH919854
length1,1041,125
definitionDH919853|Mus musculus domesticus DNA, BAC clone: B6Ng01-114E19, 5' end.DH919854|Mus musculus domesticus DNA, BAC clone: B6Ng01-114E19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,463,343 - 86,464,458)(86,629,918 - 86,631,077)
sequence
gaattcagtttctctggaaaaactgttatagacatggccaggcttttatc
ttcccagtggttctaagtcctgtcaaattgacagtcaagattaatcctta
cagtctctgactcccagggagaagggacttcgtgtccctcacagttacag
tctgatgccatggctctgaatacaccaagtttgctgaagaactgggtttg
caaaccagccttctatttatttgctaaccatatgacactagtttaattac
ttctatgactagattgttcatctgcgagtttggaatgatgctgataaact
ttagtatcttgagggtaaagggttaatacggtgcagaaagtattgctgtc
cgtgtccgatgtagctgtgcactctcttcattttcagtgtctgcaataaa
acccactgctgcccctccactggctgaggcaggagctgctaaaggtctgc
gttcagaacatcgggtaagcctccgacaacttccagggaagtggcagaga
gtcgctgtggagagtaatggagtgtggtcaccgttagaaagggctggcac
ctctttgccttggccttgagaagggggagaaagttactttgttcatggtc
tcgtgactgtcagagggaataactagaactcagtgtctcccgaatgttgg
ggtttctactgtattgtgctgttggtgaaatgcttccactgagtaaaatg
tctgcagagaatagacgcacagcccctctccccacagtgacacgcatgtc
acagcggtagtcacagcagtagtctgctgagcgctctctctctctatact
tccgggatatttcgccgcagctggggagccagtggggccagattgttgca
ctgtagcagtactctgtcagaggagacagaaccctcaaggaagtatggtc
aagagtgtgggttctttgcctgagaatgcttcttaaaataccatagcttc
aaaagctgctttagagttccgttcccaagtagttattctcacgccagtct
ttatcaagagagtcgccctttctgaaatgactcttagctgggctgatcta
caccacagctctttggtaattggtttgggttttaatccactattccctga
gctt
gaattcacccagctccttaaaccaaagctgttgtctgaaaactcacttga
gtcagggagtcttgggtagccattctggtccccgtctgcgcccgcatcac
ttgtactatgtgacttccggtggaccatgggtttcagtgggtaagcccga
tccactcccactcgtttcctcctaaagggaatgaagtcctggtcatttgc
tttgggataccggggtgtcggactagacaagtaaaacagaccctttcctt
ggccctgggcattgttccctgagccttgctgcctgattcctgcactgtgg
ggacaggagtgcctccgggcttttgtgcagacgttccttttggggcgggt
ggagacctcgtcctcctgctccatttctgtgttgctccaaagcttcgact
ggaaactattcctcaaatgtcccatcgagggccgctgggaagagtcactt
tgttcgtaagggtcgtgcttagctgagtggagtccaggagcttctgtttt
attatgtgggaacataacgcccacaggcagatgtggagccaactggagac
cagccattcagtgcctggaccgaagcctaggggagatttaaagcagatac
atgtgaagaatttgtctgaggttcactcccggctgctagagtaaactgtt
tgtccatttgccctacccacattccctttaaacgtttctcgggactgtgg
tgttggctctgccaggacattctttcaataagcatttagggagtgatggt
tatgtgccaggccagacattgctaagccccgaggaccaaagaatggacgt
gacacagtgttctgccactgactttcctccaggcctgtagatgacctgct
ctacaccatttatggaatgggtgggaaagctttagatagaagtcgtccgt
gacacaaaacaggcaactgctcttaccagcccgggttcttgtaaattgca
gagccgctctgatcagtcccatggttacggggtgagaacgtgcctggcga
caggcctgtccaagactcctgactttctcttgctacaactacaaagagac
aacactgggctgaacagtgcgctgtcagtcctcatgacaagatgctctag
ccaaccgcaccaggcttataaagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_86463343_86464458
seq2: B6Ng01-114E19.b_43_1146

seq1  GAATTCAGTTTCTCTGGAAAAACTGTTATAGACATGGCCAGGCTTTTATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTTCTCTGGAAAAACTGTTATAGACATGGCCAGGCTTTTATC  50

seq1  TTCCCAGTGGTTCTAAGTCCTGTCAAATTGACAGTCAAGATTAATCCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCAGTGGTTCTAAGTCCTGTCAAATTGACAGTCAAGATTAATCCTTA  100

seq1  CAGTCTCTGACTCCCAGGGAGAAGGGACTTCGTGTCCCTCACAGTTACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCTGACTCCCAGGGAGAAGGGACTTCGTGTCCCTCACAGTTACAG  150

seq1  TCTGATGCCATGGCTCTGAATACACCAAGTTTGCTGAAGAACTGGGTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGCCATGGCTCTGAATACACCAAGTTTGCTGAAGAACTGGGTTTG  200

seq1  CAAACCAGCCTTCTATTTATTTGCTAACCATATGACACTAGTTTAATTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAGCCTTCTATTTATTTGCTAACCATATGACACTAGTTTAATTAC  250

seq1  TTCTATGACTAGATTGTTCATCTGCGAGTTTGGAATGATGCTGATAAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATGACTAGATTGTTCATCTGCGAGTTTGGAATGATGCTGATAAACT  300

seq1  TTAGTATCTTGAGGGTAAAGGGTTAATACGGTGCAGAAAGTATTGCTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTATCTTGAGGGTAAAGGGTTAATACGGTGCAGAAAGTATTGCTGTC  350

seq1  CGTGTCCGATGTAGCTGTGCACTCTCTTCATTTTCAGTGTCTGCAATAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCCGATGTAGCTGTGCACTCTCTTCATTTTCAGTGTCTGCAATAAA  400

seq1  ACCCACTGCTGCCCCTCCACTGGCTGAGGCAGGAGCTGCTAAAGGTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACTGCTGCCCCTCCACTGGCTGAGGCAGGAGCTGCTAAAGGTCTGC  450

seq1  GTTCAGAACATCGGGTAAGCCTCCGACAACTTCCAGGGAAGTGGCAGAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGAACATCGGGTAAGCCTCCGACAACTTCCAGGGAAGTGGCAGAGA  500

seq1  GTCGCTGTGGAGAGTAATGGAGTGTGGTCACCGTTAGAAAGGGCTGGCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCTGTGGAGAGTAATGGAGTGTGGTCACCGTTAGAAAGGGCTGGCAC  550

seq1  CTCTTTGCCTTGGCCTTGAGAAGGGGGAGAAAGTTAC-TTGTTCATGGTC  599
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CTCTTTGCCTTGGCCTTGAGAAGGGGGAGAAAGTTACTTTGTTCATGGTC  600

seq1  TCGTGACTGTCAGAGGGAATAACTAGAACTCAGTGTCTCCCGAATGTTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGACTGTCAGAGGGAATAACTAGAACTCAGTGTCTCCCGAATGTTGG  650

seq1  GGTTTCTACTGTATTGTGCTGTTGGTGAAATGCTTCCACTGAGTAAAATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTACTGTATTGTGCTGTTGGTGAAATGCTTCCACTGAGTAAAATG  700

seq1  TCTGCAGAGAATAGACGCACAGCCCCTCTCCCCACAGTGACACGCATGTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGAGAATAGACGCACAGCCCCTCTCCCCACAGTGACACGCATGTC  750

seq1  ACAGCGGTAGTCACAGCAGTAGTCTGCTGAGCGCTCTCTCTCTCTATACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGGTAGTCACAGCAGTAGTCTGCTGAGCGCTCTCTCTCTCTATACT  800

seq1  TCCGGGATATTTCGCCGCAGCTGGGGAGCCAGTGGGGCCAGATTGTTGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGATATTTCGCCGCAGCTGGGGAGCCAGTGGGGCCAGATTGTTGCA  850

seq1  CTGTAGCAGTACTCTGTCAGAGGAGACAGAACCCTCAAGGAAGTATGGTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGCAGTACTCTGTCAGAGGAGACAGAACCCTCAAGGAAGTATGGTC  900

seq1  AAGAGTGTGGGTTCTTTGCCTGAGAATGCTTCCTAAAAATACCATAGCTT  949
      ||||||||||||||||||||||||||||||| || |||||||||||||||
seq2  AAGAGTGTGGGTTCTTTGCCTGAGAATGCTT-CTTAAAATACCATAGCTT  949

seq1  CAAAAGCTTGCTTTAGAGTTTCCGTTCCCCAAGTAGTTATTCTCACGCCA  999
      ||||||| |||||||||| ||||||| |||||||||||||||||||||||
seq2  CAAAAGC-TGCTTTAGAG-TTCCGTT-CCCAAGTAGTTATTCTCACGCCA  996

seq1  GTCTTTATCAAGAGAAGTCGCCCTTTCTGAAATGACTCTTAAGCTGGCTG  1049
      |||||||||||||| ||||||||||||||||||||||||| ||||||   
seq2  GTCTTTATCAAGAG-AGTCGCCCTTTCTGAAATGACTCTT-AGCTGGGCT  1044

seq1  GATCTACACCACAGTCTTCCTTTTGTAAATTGGTTTTGGTTTTTAAATCA  1099
      |||||||||||||| ||  |||| || ||||||||| ||||||  |||| 
seq2  GATCTACACCACAG-CT--CTTTGGT-AATTGGTTTGGGTTTT--AATC-  1087

seq1  CACTATTTCCTGAGCTT  1116
      ||||||| |||||||||
seq2  CACTATTCCCTGAGCTT  1104

seq1: chr12_86629918_86631077
seq2: B6Ng01-114E19.g_66_1190 (reverse)

seq1  CTCTTTACAAGCCTGGTGCGGTTTGAGCCATAGAGCATCTTTGCATGAGG  50
      ||||||| ||||||||||||||| |     |||||||||||  |||||||
seq2  CTCTTTATAAGCCTGGTGCGGTTGG----CTAGAGCATCTTGTCATGAGG  46

seq1  GCTTGACAGCCGGGCACCTGCTTCAGGCCCGGGTGGCTCGTGCTCTTTGT  100
       | |||||||   ||| ||| ||||| || | || |      ||||||||
seq2  AC-TGACAGC---GCA-CTG-TTCAGCCCAGTGTTG-----TCTCTTTGT  85

seq1  AGTTTGTAGCAAGGGGAAAGTCCAGGGAGTGCTTTGGGCCAGGCCCTGTC  150
      || ||||||||| | |||||||   ||||| |||  || |||| ||||||
seq2  AG-TTGTAGCAA-GAGAAAGTC--AGGAGT-CTT--GGACAGG-CCTGTC  127

seq1  GCCAGGCCACTGTTCTCACCCCGTAAAACCGTGGGACTGGACTCAGAGCG  200
      |||||| ||| |||||||||||||  |||| ||||||||   ||||||||
seq2  GCCAGG-CAC-GTTCTCACCCCGT--AACCATGGGACTG--ATCAGAGCG  171

seq1  GCCTCTGCAATTTACAAGAACCCGGGGCTGGTAAGAGCAGGTTGCCTGTT  250
      | ||||||||||||||||||||| ||||||||||||||| ||||||||||
seq2  G-CTCTGCAATTTACAAGAACCC-GGGCTGGTAAGAGCA-GTTGCCTGTT  218

seq1  TTGTGTCACGGACGACCTTCTATCTAAAGCTTTTCCCACCCATTCCATAA  300
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  TTGTGTCACGGACGA-CTTCTATCTAAAGC-TTTCCCACCCATTCCATAA  266

seq1  ATGGTGTAGAGCAGGTCATCTACAGGCCTGGAGGAAAGTCAGTGGCAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGTAGAGCAGGTCATCTACAGGCCTGGAGGAAAGTCAGTGGCAGAA  316

seq1  CACCTGTGTCACGTCCATTCTTTGGTCCTCGGGGCTTAGCAATGTCTGGC  400
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CA-CTGTGTCACGTCCATTCTTTGGTCCTCGGGGCTTAGCAATGTCTGGC  365

seq1  CTGGCACATAACCATCACTCCCTAAATGCTTATTGAAAGAATGTCCTGGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCACATAACCATCACTCCCTAAATGCTTATTGAAAGAATGTCCTGGC  415

seq1  AGAGCCAACACCACAGTCCCGAGAAACGTTTAAAGGGAATGTGGGTAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCCAACACCACAGTCCCGAGAAACGTTTAAAGGGAATGTGGGTAGGG  465

seq1  CAAATGGACAAACAGTTTACTCTAGCAGCCGGGAGTGAACCTCAGACAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGACAAACAGTTTACTCTAGCAGCCGGGAGTGAACCTCAGACAAA  515

seq1  TTCTTCACATGTATCTGCTTTAAATCTCCCCTAGGCTTCGGTCCAGGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCACATGTATCTGCTTTAAATCTCCCCTAGGCTTCGGTCCAGGCAC  565

seq1  TGAATGGCTGGTCTCCAGTTGGCTCCACATCTGCCTGTGGGCGTTATGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGGCTGGTCTCCAGTTGGCTCCACATCTGCCTGTGGGCGTTATGTT  615

seq1  CCCACATAATAAAACAGAAGCTCCTGGACTCCACTCAGCTAAGCACGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACATAATAAAACAGAAGCTCCTGGACTCCACTCAGCTAAGCACGACC  665

seq1  CTTACGAACAAAGTGACTCTTCCCAGCGGCCCTCGATGGGACATTTGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACGAACAAAGTGACTCTTCCCAGCGGCCCTCGATGGGACATTTGAGG  715

seq1  AATAGTTTCCAGTCGAAGCTTTGGAGCAACACAGAAATGGAGCAGGAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTTCCAGTCGAAGCTTTGGAGCAACACAGAAATGGAGCAGGAGGA  765

seq1  CGAGGTCTCCACCCGCCCCAAAAGGAACGTCTGCACAAAAGCCCGGAGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGTCTCCACCCGCCCCAAAAGGAACGTCTGCACAAAAGCCCGGAGGC  815

seq1  ACTCCTGTCCCCACAGTGCAGGAATCAGGCAGCAAGGCTCAGGGAACAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTGTCCCCACAGTGCAGGAATCAGGCAGCAAGGCTCAGGGAACAAT  865

seq1  GCCCAGGGCCAAGGAAAGGGTCTGTTTTACTTGTCTAGTCCGACACCCCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAGGGCCAAGGAAAGGGTCTGTTTTACTTGTCTAGTCCGACACCCCG  915

seq1  GTATCCCAAAGCAAATGACCAGGACTTCATTCCCTTTAGGAGGAAACGAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCCAAAGCAAATGACCAGGACTTCATTCCCTTTAGGAGGAAACGAG  965

seq1  TGGGAGTGGATCGGGCTTACCCACTGAAACCCATGGTCCACCGGAAGTCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTGGATCGGGCTTACCCACTGAAACCCATGGTCCACCGGAAGTCA  1015

seq1  CATAGTACAAGTGATGCGGGCGCAGACGGGGACCAGAATGGCTACCCAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTACAAGTGATGCGGGCGCAGACGGGGACCAGAATGGCTACCCAAG  1065

seq1  ACTCCCTGACTCAAGTGAGTTTTCAGACAACAGCTTTGGTTTAAGGAGCT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCTGACTCAAGTGAGTTTTCAGACAACAGCTTTGGTTTAAGGAGCT  1115

seq1  GGGTGAATTC  1160
      ||||||||||
seq2  GGGTGAATTC  1125