BAC Information

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BAC

Clone NameB6Ng01-116K21
Chromosome12 (Build37)
Map Location 61,907,729 - 61,908,955
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622488, LOC665665, Ppia-ps12_475.1
Downstream geneLOC100040300, LOC665677, Nanog-ps2, Lrfn5, LOC665699
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116K21.bB6Ng01-116K21.g
ACCDH921617DH921618
length1,216992
definitionDH921617|Mus musculus domesticus DNA, BAC clone: B6Ng01-116K21, 5' end.DH921618|Mus musculus domesticus DNA, BAC clone: B6Ng01-116K21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactcggacaaccggattcttctaaggcaaagctttattgcttca
tctgaaggaagaccccgaacaaggaaaatggtgctgcttatatacccctc
cgtgtgacgtgtcagctcctcattagctgctcactcatcaccccactact
acgccccgggatgggcagtgacttggcacgaatttactcttgcacctgta
cacattacttgtttaccaattaggcacagcggaggccagtgccatcttgt
aatggcgattgctcacagctctccacaattatgcaagatacaagtttatc
tttaagctatttcatgcctaaatagcatagttaattgatgaggcagggtt
tttatatcaacaaaaagtgttcttatgttacattgtatgtgtgcctgaaa
acatatatatgtaaaattgatttgagtaccaacacttatgtctttgctat
tcctaagatatatatcatggtagtgtaaaaataaagctcctataaataat
aaatatattgctttttctgtactcaaatgcattttacatcttaaaatcat
gtctttctgtagcagagatcagaaatatctctatattttccccacatatt
ttcattttataaacatcttatatataagtccatatacttgttttcctcct
gtagtaaattgtgatttaccaaaagttgctttctttaatgatgaaatgaa
ttgctctgatattttcagtctcattcactgcatgaatgctgcttctgtga
gttatagagcaaagataggctttctcaaaaaattatgcacatttgaagtt
attacatgtgtttatgataaaatttgacctgaaaagccttctgtctatta
tgaacttctatatagcaagtttaacatattcaaacaggtatgtcctatca
aggaatcacttgagtgtcagcaaatcccagctgtcaaatattacctaatt
tctggcacaaatcctgtctatataaggcaattgttttgccacaaaaaaaa
tatagatactgagtgtactcatcaagtgattctgcattaaatttattttt
caatagcatcctgcatgtataaatcatcattgctctaagggcatgcccat
tctcaattccattttttttattcaggctttcactaaatactagaccttgt
aactattttttgtcaggcaggttaattaacatcactgctacattggcaag
acagttgtgaatcata

gaattctatatgaccaacacgaactgagactgaacttcaataacaacata
aataatagaaagccaacttatacatggaagctaaacaatactctactcag
tgataacttggtcaaagaagaaataaagaatgaaattaaagacgttttaa
agtttaatgaaaatgaatccacaacatacccagacttatgggacacaatg
aaggtggtcctaaaaggaaaactcagaaccctgagtgcctccaaaaagaa
actggagagagaatgcagtagcagtctgacagcacacctagaagctatag
aacaaagggaagcaaatccatgcaagaggagtagactaaaggaaataatc
aaactcagggctgaaatcaaccaagtagaaacaaaaagaagtatacaaag
aatcaaccaaatcaggagctgtttctttgagaaaatcaggaaaatagata
aacccatatccagactaactagaagacacagaggcagtatcctaattaac
aaaatcagaaatgaaaagggagatatcacaacagaaactgaggaaatcca
aaaaatcatgagttcctacaacaaaagcctatactcaaaactattggaaa
acctggatgaaatggacaactttctagaccgataccaggtacgaaagtta
aatcaagatcagattaactatctaaacagttccatattccctaaagaaat
agaaacagtcgttaatagtctcccaaccaaaataagtccaggtccagatg
ggttaaagaagagttctatcagaccttctgtgggaactaaaaggagctta
ggggaaggaaggggaaagggaggatagcccacatccagccagagttccac
ctatgctctggacaggcagatgcaggagagctgccagacccttttcactc
agcctgggtgggcatccaagtcgtagccctgaacaaaggggcccagggtt
acaccctgtagcccggggttaggaagagagttcccacagtcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_61907729_61908955
seq2: B6Ng01-116K21.b_47_1262

seq1  GAATTCACTCGGACAACCGGATTCTTCTAAGGCAAAGCTTTATTGCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCGGACAACCGGATTCTTCTAAGGCAAAGCTTTATTGCTTCA  50

seq1  TCTGAAGGAAGACCCCGAACAAGGAAAATGGTGCTGCTTATATACCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGGAAGACCCCGAACAAGGAAAATGGTGCTGCTTATATACCCCTC  100

seq1  CGTGTGACGTGTCAGCTCCTCATTAGCTGCTCACTCATCACCCCACTACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGACGTGTCAGCTCCTCATTAGCTGCTCACTCATCACCCCACTACT  150

seq1  ACGCCCCGGGATGGGCAGTGACTTGGCACGAATTTACTCTTGCACCTGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCCGGGATGGGCAGTGACTTGGCACGAATTTACTCTTGCACCTGTA  200

seq1  CACATTACTTGTTTACCAATTAGGCACAGCGGAGGCCAGTGCCATCTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTACTTGTTTACCAATTAGGCACAGCGGAGGCCAGTGCCATCTTGT  250

seq1  AATGGCGATTGCTCACAGCTCTCCACAATTATGCAAGATACAAGTTTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGCGATTGCTCACAGCTCTCCACAATTATGCAAGATACAAGTTTATC  300

seq1  TTTAAGCTATTTCATGCCTAAATAGCATAGTTAATTGATGAGGCAGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCTATTTCATGCCTAAATAGCATAGTTAATTGATGAGGCAGGGTT  350

seq1  TTTATATCAACAAAAAGTGTTCTTATGTTACATTGTATGTGTGCCTGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATCAACAAAAAGTGTTCTTATGTTACATTGTATGTGTGCCTGAAA  400

seq1  ACATATATATGTAAAATTGATTTGAGTACCAACACTTATGTCTTTGCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATATGTAAAATTGATTTGAGTACCAACACTTATGTCTTTGCTAT  450

seq1  TCCTAAGATATATATCATGGTAGTGTAAAAATAAAGCTCCTATAAATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAGATATATATCATGGTAGTGTAAAAATAAAGCTCCTATAAATAAT  500

seq1  AAATATATTGCTTTTTCTGTACTCAAATGCATTTTACATCTTAAAATCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATTGCTTTTTCTGTACTCAAATGCATTTTACATCTTAAAATCAT  550

seq1  GTCTTTCTGTAGCAGAGATCAGAAATATCTCTATATTTTCCCCACATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCTGTAGCAGAGATCAGAAATATCTCTATATTTTCCCCACATATT  600

seq1  TTCATTTTATAAACATCTTATATATAAGTCCATATACTTGTTTTCCTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTATAAACATCTTATATATAAGTCCATATACTTGTTTTCCTCCT  650

seq1  GTAGTAAATTGTGATTTACCAAAAGTTGCTTTCTTTAATGATGAAATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAAATTGTGATTTACCAAAAGTTGCTTTCTTTAATGATGAAATGAA  700

seq1  TTGCTCTGATATTTTCAGTCTCATTCACTGCATGAATGCTGCTTCTGTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTGATATTTTCAGTCTCATTCACTGCATGAATGCTGCTTCTGTGA  750

seq1  GTTATAGAGCAAAGATAGGCTTTCTCAAAAAATTATGCACATTTGAAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAGAGCAAAGATAGGCTTTCTCAAAAAATTATGCACATTTGAAGTT  800

seq1  ATTACATGTGTTTATGATAAAATTTGACCTGAAAAGCCTTCTGTCTATTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATGTGTTTATGATAAAATTTGACCTGAAAAGCCTTCTGTCTATTA  850

seq1  TGAACTTCTATATAGCAAGTTTAACATATTCAAACAGGTATGTCCTATCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTCTATATAGCAAGTTTAACATATTCAAACAGGTATGTCCTATCA  900

seq1  AGGAATCACTTGAGTGTCAGCAAATCCCAGCTGTCAAATATTACCTAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCACTTGAGTGTCAGCAAATCCCAGCTGTCAAATATTACCTAATT  950

seq1  TCTGGCACAAATCCTGTCTATATAAGGCAATTGTTTTGCCAC-AAAAAAA  999
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCTGGCACAAATCCTGTCTATATAAGGCAATTGTTTTGCCACAAAAAAAA  1000

seq1  TATAGATACTGAGTGTACTCAATCAAGGTGATTCTGCATTTAAATTTATT  1049
      |||||||||||||||||||| ||||| ||||||||||| |||||||||||
seq2  TATAGATACTGAGTGTACTC-ATCAA-GTGATTCTGCA-TTAAATTTATT  1047

seq1  TTTCAATAGCATCCTGCATGTATAAATCATCATTGCTCTATAGTGCATGC  1099
      |||||||||||||||||||||||||||||||||||||||| || ||||||
seq2  TTTCAATAGCATCCTGCATGTATAAATCATCATTGCTCTA-AGGGCATGC  1096

seq1  CCATTCTCAATTCCATTTTTTTTA-TCAAGC-TTCACTAAATTTAACTAG  1147
      |||||||||||||||||||||||| ||| || ||||||||||   |||||
seq2  CCATTCTCAATTCCATTTTTTTTATTCAGGCTTTCACTAAAT---ACTAG  1143

seq1  ACTTTGGTACTTATTTTTTGTACAGAGCAAGTTTATAATATACATTCAAC  1197
      || || |||  |||||||||| ||| ||| ||   ||||  ||||   ||
seq2  ACCTT-GTAACTATTTTTTGT-CAG-GCAGGT---TAATTAACAT--CAC  1185

seq1  TGCTACATTGCACAGCAAGTT-TGAATCATA  1227
      ||||||||||   ||  |||| |||||||||
seq2  TGCTACATTGGCAAGACAGTTGTGAATCATA  1216


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