BAC Information

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BAC

Clone NameB6Ng01-117H03
ChromosomeY (Build37)12 (Build37)
Map Location 1,120,570 - 1,120,8926,354,662 - 6,355,710
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneZfy1, Ube1y1, Rhoay-ps3, Jarid1d, Eif2s3y, Tspy-ps, Uty, Ddx3y, LOC100042763, LOC385246, Usp9y, LOC100039278
Downstream geneEG667079, LOC667089, Rhoay-ps1, Zfy2, Ube1y1-ps2, LOC667137, LOC100039373, LOC100039381, LOC667143, LOC100039401, LOC100039430, Vmn2r-ps137, LOC100039450, LOC547210, Ube1y1-ps1, Sry, LOC100042840, LOC100042849, LOC620228, LOC667181, Rbmy1a1, LOC667189, LOC100042874
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117H03.bB6Ng01-117H03.g
ACCDH922184DH922185
length9101,044
definitionDH922184|Mus musculus domesticus DNA, BAC clone: B6Ng01-117H03, 5' end.DH922185|Mus musculus domesticus DNA, BAC clone: B6Ng01-117H03, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(1,120,570 - 1,120,892)(6,354,662 - 6,355,710)
sequence
gaattctttgtttagttctgtaccccaatttttaatggggttatttgatt
ttctggagtccaccttcttgagttcttcatatatattggatattagtccc
ctatttgatttaggatagataaagatcctttcccaattgttggtggcctt
tttgtcttattgacattgtcttttgccttacaaaagctttacagtttatt
tttcttttttttaattaggtattttcctcgtttacattttcaatgctatc
ccaaaggtcccccatacccacccccccaatcccatacccacccactcccc
ctttttggccctggcattcgcctgtactgaggcatataaagtttgcaagt
ccaatgggcctctctttgcagtgatggccgactaggccatcttttgatac
atatgcagttaaggacaagagctccagtgtactggttaattcatattgtt
gttccacctatagggttgcagttccctttagctccttgggtaatttctct
agatcctccattgggggctgtgtgacccatctaatagctgactgtattca
tccacttctgtgtttgctaggccctggcatagtctcacaagaaagagcta
tatctgggtcctttcagcgaaaacttgctagtatatgcaatgctgtcagc
atatggaagctgattatgggatggatccctgcatatggcaatcactagat
ggtccatcctttcctcacagctccaaattttttctctgtaactccttcca
tgggtgttttgttcccatttctaagaaaggatgaagtgtccacaatttgg
tcttcgttcttcttgaatttcatgcgttttggcaagttgtatcttatatc
ttgggttatcctaagtttctgggctaatatccacttatcagtgagtacat
attgtgcgag
gaattctgaaggcatcattaataagatctttttcaatgatcaagagggaa
gattgattttgttccttacaaaatggctttcttcatttgtaagctcctct
cgaaagttctatctttctggcaatcaagattcataacatgcccatttggg
tacttgtagaatttttttttaagtcatctgtctatcacagagtgactgtg
agaagactaaaagtgaaatgtaacttggtgtatttactttcaagacgaac
ttcatataactaagatgctgcaggcaaaacatgccttagaatttggatgt
gacctaccttaaataggcctgctcgtgaaagatgccctttgacagaagga
gttgctctctgttctgtccttgactacacaattctggtacatagaccatg
cctactgagttcccacagtttttgtcactatttagatatagcttggagaa
tgacctattttcagtcattctaaaagggagattttggtatctctcaaaaa
agtttggatcatgtatgctaaaaaatcttcctgttgatggagaggtttct
atttaaaaatctacttagttggtaaggagttgtttgttcctttgttagag
aagtaatagcacttgtctatttcagtttatcagactatggagtcatgact
aacttgttgaagatgtaccaaatcacaggtttgatactattttctgtctg
acgctaatgacctttacaacttaatggctattgtgcatctaaaatttgtg
gtattttgatgtaacaaaagaatttacagaagactaaaagaaggaaaaat
tcttcactaacagtaatattgtaagaaccaagccacagaaacaagaaaaa
ctagcaaaacaacattaaaaatatttttaaaagcttagcatggagttcat
tattgaaaatagttcaaatttccaccttgaccaagaatcaaagtgtaagt
aagcctacccaccccttcatgacagggcctcactgcttatcatttgtaat
gtagaatttaatcccaattattttttctgtgggagataataaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrY_1120570_1120892
seq2: B6Ng01-117H03.b_242_543

seq1  TTTTTTTTTTTTTTAATTTTTTTTTCCATTTTTTATTAGGTATTTAACTC  50
                      ||||| |||   ||||| |||||||||||  |||
seq2  ----------------TTTTTCTTT---TTTTTAATTAGGTATTTTCCTC  31

seq1  ATTTACATTTCCAATGCTATACCAAAAGTCCCCCATATCCACCCACCCCC  100
       ||||||||| ||||||||| ||||| |||||||||| |||||  |||||
seq2  GTTTACATTTTCAATGCTATCCCAAAGGTCCCCCATACCCACC--CCCCC  79

seq1  ACTCCCCTGCCCACCCACTCCCCCTTTTTGGCCCTGGTATTCCCCTGTAC  150
      | |||| | |||||||||||||||||||||||||||| |||| |||||||
seq2  AATCCCATACCCACCCACTCCCCCTTTTTGGCCCTGGCATTCGCCTGTAC  129

seq1  TGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTCCAGTGATGG  200
      || ||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGAGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCTTTGCAGTGATGG  179

seq1  CCGACTAGGCCATCTTTTGATATATATGCAGCTAGAGTCAAGAGCTCCGG  250
      |||||||||||||||||||||| |||||||| ||  | |||||||||| |
seq2  CCGACTAGGCCATCTTTTGATACATATGCAGTTAAGGACAAGAGCTCCAG  229

seq1  GGTACTGGTTAGCTCATAACGTTGTTCCACCTATAGGGTTGGAGATCCCT  300
       ||||||||||  |||||  ||||||||||||||||||||| || |||||
seq2  TGTACTGGTTAATTCATATTGTTGTTCCACCTATAGGGTTGCAGTTCCCT  279

seq1  TTAGCTCCTTGGCTACTTTCTCT  323
      |||||||||||| || |||||||
seq2  TTAGCTCCTTGGGTAATTTCTCT  302

seq1: chr12_6354662_6355710
seq2: B6Ng01-117H03.g_66_1109 (reverse)

seq1  CTTTATTATCTCCCACAGAAAAAAATAAATTGGGATTAAATTCTACATTA  50
      ||||||||||||||||||||||||   |||||||||||||||||||||||
seq2  CTTTATTATCTCCCACAGAAAAAA--TAATTGGGATTAAATTCTACATTA  48

seq1  CAAAATGAATAAGCAGTGAGGCCCTGTCAATGAAGGGGTGGGTAGGCTTA  100
      | ||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  C-AAATG-ATAAGCAGTGAGGCCCTGTC-ATGAAGGGGTGGGTAGGCTTA  95

seq1  CTTACACTTTGATTCTTGGTCAAGGTGGAAATTTGAACTATTTTCAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACACTTTGATTCTTGGTCAAGGTGGAAATTTGAACTATTTTCAATAA  145

seq1  TGAACTCCATGCTAAGCTTTTAAAAATATTTTTAATGTTGTTTTGCTAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCCATGCTAAGCTTTTAAAAATATTTTTAATGTTGTTTTGCTAGT  195

seq1  TTTTCTTGTTTCTGTGGCTTGGTTCTTACAATATTACTGTTAGTGAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTGTTTCTGTGGCTTGGTTCTTACAATATTACTGTTAGTGAAGAA  245

seq1  TTTTTCCTTCTTTTAGTCTTCTGTAAATTCTTTTGTTACATCAAAATACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTTCTTTTAGTCTTCTGTAAATTCTTTTGTTACATCAAAATACC  295

seq1  ACAAATTTTAGATGCACAATAGCCATTAAGTTGTAAAGGTCATTAGCGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTTTAGATGCACAATAGCCATTAAGTTGTAAAGGTCATTAGCGTC  345

seq1  AGACAGAAAATAGTATCAAACCTGTGATTTGGTACATCTTCAACAAGTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAAAATAGTATCAAACCTGTGATTTGGTACATCTTCAACAAGTTA  395

seq1  GTCATGACTCCATAGTCTGATAAACTGAAATAGACAAGTGCTATTACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATGACTCCATAGTCTGATAAACTGAAATAGACAAGTGCTATTACTTC  445

seq1  TCTAACAAAGGAACAAACAACTCCTTACCAACTAAGTAGATTTTTAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAACAAAGGAACAAACAACTCCTTACCAACTAAGTAGATTTTTAAATA  495

seq1  GAAACCTCTCCATCAACAGGAAGATTTTTTAGCATACATGATCCAAACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTCTCCATCAACAGGAAGATTTTTTAGCATACATGATCCAAACTT  545

seq1  TTTTGAGAGATACCAAAATCTCCCTTTTAGAATGACTGAAAATAGGTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGAGATACCAAAATCTCCCTTTTAGAATGACTGAAAATAGGTCAT  595

seq1  TCTCCAAGCTATATCTAAATAGTGACAAAAACTGTGGGAACTCAGTAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAGCTATATCTAAATAGTGACAAAAACTGTGGGAACTCAGTAGGC  645

seq1  ATGGTCTATGTACCAGAATTGTGTAGTCAAGGACAGAACAGAGAGCAACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTATGTACCAGAATTGTGTAGTCAAGGACAGAACAGAGAGCAACT  695

seq1  CCTTCTGTCAAAGGGCATCTTTCACGAGCAGGCCTATTTAAGGTAGGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGTCAAAGGGCATCTTTCACGAGCAGGCCTATTTAAGGTAGGTCA  745

seq1  CATCCAAATTCTAAGGCATGTTTTGCCTGCAGCATCTTAGTTATATGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAAATTCTAAGGCATGTTTTGCCTGCAGCATCTTAGTTATATGAAG  795

seq1  TTCGTCTTGAAAGTAAATACACCAAGTTACATTTCACTTTTAGTCTTCTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGTCTTGAAAGTAAATACACCAAGTTACATTTCACTTTTAGTCTTCTC  845

seq1  ACAGTCACTCTGTGATAGACAGATGACTTAAAAAAAAATTCTACAAGTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCACTCTGTGATAGACAGATGACTTAAAAAAAAATTCTACAAGTAC  895

seq1  CCAAATGGGCATGTTATGAATCTTGATTGCCAGAAAGATAGAACTTTCGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGGGCATGTTATGAATCTTGATTGCCAGAAAGATAGAACTTTCGA  945

seq1  GAGGAGCTTACAAATGAAGAAAGCCATTTTGTAAGGAACAAAATCAATCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCTTACAAATGAAGAAAGCCATTTTGTAAGGAACAAAATCAATCT  995

seq1  TCCCTCTTGATCATTGAAAAAGATCTTATTAATGATGCCTTCAGAATTC  1049
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTTGATCATTGAAAAAGATCTTATTAATGATGCCTTCAGAATTC  1044