BAC Information

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BAC

Clone NameB6Ng01-117I24
Chromosome12 (Build37)
Map Location 112,783,883 - 112,785,087
singlet/doubletsinglet
Overlap geneEif5
Upstream genePpp2r5c, 9430024F10Rik, Dync1h1, 1700001K19Rik, Hsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266
Downstream geneMark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117I24.bB6Ng01-117I24.g
ACCDH922273DH922274
length1,1891,157
definitionDH922273|Mus musculus domesticus DNA, BAC clone: B6Ng01-117I24, 5' end.DH922274|Mus musculus domesticus DNA, BAC clone: B6Ng01-117I24, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccctagcaaacttgtttttaaaaggatgattttcaaacttgtttt
taaaagggtgattttcaatctatacaattcattctacatattaaaaaaca
aacaaaaaaaaaccccaagtgatccaatgaaattaccaacatgttttcat
gcatagggctgacatacttctccagagtacccaacatttaaattcaaagc
atgagctataatcctggacagcattcagtgctttttacttacagtaaaat
gaaaacatactttttaatattaaagcagacagaaatttaattttaacatt
gttttaatcaagtaatgtagctgtttgaaacaggaaactttatgacacct
caatagagcaacgaaggattattcctatcaggttaacctccatgagtaaa
acccagattgtgtgaaatttgaatcccactggtttggcaccagaatgaac
agaagcccaagaccttcctaagtgtctaagacctgaccgtttccctttaa
agcaacagctctaagacaaaaatcttgccaacctgaggccgaatgtgctg
atgtacttgagaatctcaaaaaatgatgacaaatggagatgggcggacca
tgcaacaaagaatctgaaacccaggagacaagtgactttccaagtaccac
atctttggtgtgacacagcacattcccttgttaccattccaggtgtatgg
ctcctgctccacactcaaactcttattaaagttctaattttactaaatat
ttgtatgattttaatgcacaattttttacattgtttattaaagtctaata
atctgtgagatggatgacacaaagaatgaaattcaaataatgtatgagct
agcacgccacacacaaattaaccacatggatttttaactcccagaatgca
cttttgtagaaagaaatatgtgctgtttttaatattgaagacaagttttc
aaatatagtcaggaccccagatagagcttacaccagcaagtgtgtaagaa
ctcactttttgtgtctgagtccaaggctctgaatgggctggtcagcttag
ctagctgcactcacccagtgacatcagtctcttcaggtattcagctatat
tcattgtgaagtaaaaaattcccagtctaacccaaatacagcttgactcg
aagatgagttaccttctcttaaatagacattggaaaggg
gaattctcctctgaggaaacagactgggaggaagaagcagcccattacca
gccagctaattggtcaagaaaaaagccaaaagcggctggcgaaggccagt
ttgctgattggcctcagggcagtcggcttcaaggtccgccctatgcggag
tccccgccctgcgtagtgcgtcagcaatgcgcagagaggcagtgcgcaga
gaggcagtgcgcagactcattcattcccagagaggaacaaaggaaaatac
aacaggcatttccggtctttgaaggagccgagggtgggcgtgtccacgct
ccggtagaatacttacaaattaaagaaattgccgagtcggttcgtaaata
cggaaccaatgctaattttaccttggtgcagttagacaggctcgctggca
tggcactaactcctgctgactggcaaacggttgtaaaagccgctctccct
agtatgggcaaatatatggaatggagagcgctttggcacgaggctgcaca
ggcgcaggaccgagcaaacgctgctgctttaactccagagcagagagatt
ggacttttgacttgttaacgggtcagagagcttattctgctaaacctgat
aagaggtatcaatggaaggtcttaccacagggaatgtccaatagtcctac
tatgtgtcaactttatgtgcaagaagctcttttgccagtgagggaacaat
tcccctctttaattttgctcctttacatggatgacatcctcctgtgccat
aaagaccttaccatgctacaaaaggcatatccttttctacttaaaacttt
aagtcagtggggtttacagatagccacagaaaaggtccaaatttctgata
caggacaattcttgggctctgtggtgtccccagataagattgtgccccaa
aacgtagagataagaagagatcaccttccataccttaatgattttcaaag
ctgttgggagatataaattggctcagacctttttttaagattcttccgct
gagttagtctttgttagtttttaagagagaatcctcaatatcttcttccc
tagactcttactctagctgctacagcttacaacgtgaaaagcttacagat
tcaattcaaccgtattgagaattccagcccttacagtggggtctctagac
agcaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr12_112783883_112785087
seq2: B6Ng01-117I24.b_49_1237 (reverse)

seq1  CCCTTCCCCAATTGTCTTATTTAAAGAGAAAGTTAAACTCATACTTCTGA  50
      ||||| ||  | |||| ||||| ||||||| ||  ||||||| |||| ||
seq2  CCCTTTCC--AATGTC-TATTT-AAGAGAAGGT--AACTCAT-CTTC-GA  42

seq1  GTCAGAGCCTGTATTTTGGTGTAAGACTTGGGATATTTTTTACTTCACAT  100
      |||| || ||||||||  | || |||| ||||| ||||||||||||||| 
seq2  GTCA-AG-CTGTATTT--GGGTTAGAC-TGGGA-ATTTTTTACTTCACAA  86

seq1  TGAATATAGCTGGATACCTG-AGAGACTGATGGCCACTGGGTGGGTGCAG  149
      |||||||||||| ||||||| |||||||||| | ||||||||| ||||||
seq2  TGAATATAGCTGAATACCTGAAGAGACTGAT-GTCACTGGGTGAGTGCAG  135

seq1  CTAGCTAAGGCCTGACCAGCCCATTCAGAGCCTTGGACTTCAGACAC-AA  198
      |||||||||  ||||||||||||||||||||||||||| |||||||| ||
seq2  CTAGCTAAG--CTGACCAGCCCATTCAGAGCCTTGGAC-TCAGACACAAA  182

seq1  AAGTGAGTTCTTACACACTTGCTGGTGTAAGCTCTATCTGGGGTCCTGAC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGAGTTCTTACACACTTGCTGGTGTAAGCTCTATCTGGGGTCCTGAC  232

seq1  TATATTTGAAAACTTGTCTTCAATATTAAAAACAGCACATATTTCTTTCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTGAAAACTTGTCTTCAATATTAAAAACAGCACATATTTCTTTCT  282

seq1  ACAAAAGTGCATTCTGGGAGTTAAAAATCCATGTGGTTAATTTGTGTGTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGTGCATTCTGGGAGTTAAAAATCCATGTGGTTAATTTGTGTGTG  332

seq1  GCGTGCTAGCTCATACATTATTTGAATTTCATTCTTTGTGTCATCCATCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGCTAGCTCATACATTATTTGAATTTCATTCTTTGTGTCATCCATCT  382

seq1  CACAGATTATTAGACTTTAATAAACAATGTAAAAAATTGTGCATTAAAAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGATTATTAGACTTTAATAAACAATGTAAAAAATTGTGCATTAAAAT  432

seq1  CATACAAATATTTAGTAAAATTAGAACTTTAATAAGAGTTTGAGTGTGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAATATTTAGTAAAATTAGAACTTTAATAAGAGTTTGAGTGTGGA  482

seq1  GCAGGAGCCATACACCTGGAATGGTAACAAGGGAATGTGCTGTGTCACAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAGCCATACACCTGGAATGGTAACAAGGGAATGTGCTGTGTCACAC  532

seq1  CAAAGATGTGGTACTTGGAAAGTCACTTGTCTCCTGGGTTTCAGATTCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGATGTGGTACTTGGAAAGTCACTTGTCTCCTGGGTTTCAGATTCTT  582

seq1  TGTTGCATGGTCCGCCCATCTCCATTTGTCATCATTTTTTGAGATTCTCA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCATGGTCCGCCCATCTCCATTTGTCATCATTTTTTGAGATTCTCA  632

seq1  AGTACATCAGCACATTCGGCCTCAGGTTGGCAAGATTTTTGTCTTAGAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACATCAGCACATTCGGCCTCAGGTTGGCAAGATTTTTGTCTTAGAGC  682

seq1  TGTTGCTTTAAAGGGAAACGGTCAGGTCTTAGACACTTAGGAAGGTCTTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTTTAAAGGGAAACGGTCAGGTCTTAGACACTTAGGAAGGTCTTG  732

seq1  GGCTTCTGTTCATTCTGGTGCCAAACCAGTGGGATTCAAATTTCACACAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTGTTCATTCTGGTGCCAAACCAGTGGGATTCAAATTTCACACAA  782

seq1  TCTGGGTTTTACTCATGGAGGTTAACCTGATAGGAATAATCCTTCGTTGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGTTTTACTCATGGAGGTTAACCTGATAGGAATAATCCTTCGTTGC  832

seq1  TCTATTGAGGTGTCATAAAGTTTCCTGTTTCAAACAGCTACATTACTTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGAGGTGTCATAAAGTTTCCTGTTTCAAACAGCTACATTACTTGA  882

seq1  TTAAAACAATGTTAAAATTAAATTTCTGTCTGCTTTAATATTAAAAAGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACAATGTTAAAATTAAATTTCTGTCTGCTTTAATATTAAAAAGTA  932

seq1  TGTTTTCATTTTACTGTAAGTAAAAAGCACTGAATGCTGTCCAGGATTAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCATTTTACTGTAAGTAAAAAGCACTGAATGCTGTCCAGGATTAT  982

seq1  AGCTCATGCTTTGAATTTAAATGTTGGGTACTCTGGAGAAGTATGTCAGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATGCTTTGAATTTAAATGTTGGGTACTCTGGAGAAGTATGTCAGC  1032

seq1  CCTATGCATGAAAACATGTTGGTAATTTCATTGGATCACTTGGGGTTTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGCATGAAAACATGTTGGTAATTTCATTGGATCACTTGGGGTTTTT  1082

seq1  TTTTGTTTGTTTTTTAATATGTAGAATGAATTGTATAGATTGAAAATCAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTGTTTTTTAATATGTAGAATGAATTGTATAGATTGAAAATCAC  1132

seq1  CCTTTTAAAAACAAGTTTGAAAATCATCCTTTTAAAAACAAGTTTGCTAG  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTAAAAACAAGTTTGAAAATCATCCTTTTAAAAACAAGTTTGCTAG  1182

seq1  GGAATTC  1205
      |||||||
seq2  GGAATTC  1189